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Mateus, I., Mateus H., Antunes M. T., Mateus O., Taquet P., Ribeiro V., & Manuppella G. (1998).  Upper Jurassic Theropod Dinosaur embryos from Lourinhã (Portugal). Mem. Acad. Ciências de Lisboa. 37, 101-109. Abstractmateus_et_al_1998_-_upper_jurassic_theropod_dinosaur_embryos_from_lourinha_portugal_-_upper_jurassic_palaeoenvironments_in_portugal_ed._....pdfWebsite

Upper Jurassic nesting site from Paimogo (Lourinhã, Portugal) yielded the oldest dinosaur theropod embryos ever found. Numerous bones, including skull bones, from the skeleton of these embryos have been collected. The study of bones and embryos offers the possibility to learn more on the early life of theropod dinosaurs.

Mateus, I., Mateus H., Antunes M. T., Mateus O., Taquet P., Ribeiro V., & Manuppella G. (1998).  Upper Jurassic Theropod Dinosaur embryos from Lourinhã (Portugal). Upper Jurassic paleoenvironments in Portugal, Mem. Acad. Ciências de Lisboa. 37, 101-109. Abstract
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Allain, R., Taquet P., Battail B., Dejax J., Richir P., Veran M., Limon-Duparcmeur F., Vacant R., Mateus O., Sayarath P., Khenthavong B., & Phouyavong S. (1999).  Un nouveau genre de dinosaure sauropode de la formation des Gres superieurs (Aptien-Albien) du Laos. Comptes Rendus de l'Academie des Sciences - Series IIA - Earth and Planetary Science. 329, 609-616., oct, Number 8 Abstractallain_taquet_battail_dejax_richir_mateus_et_al_1999_un_nouveau_genre_de_dinosaure_sauropode_de_la_formation_des_gres_superieurs_aptien-albien_du_laos.pdfWebsite

The partly-articulated postcranial remains of two sauropod skeletons recently found in Tang Vay (Savannakhet Province, Laos) are assigned to the species Tangvayosaurus hoffeti (nov. gen., nov. sp.). The derived characters present in the new material confirm the presence of titanosaurs in South East Asia at the end of the Early Cretaceous, but are not consistent with its placement within Titanosaurus genus as first done by Hoffet in 1942. All of the material relative to this species is therefore referred to a new genus: Tangvayosaurus. Tangvayosaurus and the Thai genus Phuwiangosaurus have strong affinities and are considered as primitive titanosaurs.

Allain, R., Taquet P., Battail B., Dejax J., Richir P., Véran M., Limon-Duparcmeur F., Vacant R., Mateus O., Sayarath P., Khenthavong B., & Phouyavong S. (1999).  Un nouveau genre de dinosaure sauropode de la formation des Grès supérieurs (Aptien-Albien) du Laos. Comptes Rendus de l{\textquotesingle}Académie des Sciences - Series {IIA} - Earth and Planetary Science. 329, 609–616., oct, Number 8: Elsevier {BV} AbstractWebsite
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Allain, R., Taquet P., Battail B., Dejax J., Richir P., Véran M., Limon-Duparcmeur F., & et al (1999).  Un nouveau genre de dinosaure sauropode de la formation des Grès supérieurs (Aptien-Albien) du Laos. Comptes Rendus de l'Académie des Sciences-Series IIA-Earth and Planetary Science. 329, 609–616., Number 8 Abstract
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Mateus, O., Taquet P., Antunes M. T., Mateus H., & Ribeiro V. (1998).  Theropod dinosaur nest from Lourinhã, Portugal. Journal of Vertebrate Paleontology. 18, 61A., Number (Suppl. 3) Abstractmateus_et_al_1998_theropod_dinosaur_nest_from_lourinha_portugal_svp.pdfWebsite

More than 100 well preserved dinosaur eggs have been discovered in the Upper Jurassic levels (Tithonian) of Lourinhã, Portugal. The eggshels dispersed in a big area with 11 meters in the highest diameter with high concentration in the middle.
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Mateus, O., Taquet P., Antunes M. T., Mateus H., & Ribeiro V. (1998).  Theropod dinosaur nest from Lourinhã, Portugal. Journal of Vertebrate Paleontology. 18, 61., Number (Suppl. 3) Abstract
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Tschopp, E., & Mateus O. (2012).  A sternal plate of a large-sized sauropod dinosaur from the Late Jurassic of Portugal. 10th Annual Meeting of the European Association of Vertebrate Paleontologists ¡Fundamental! . 20, 263-266.: European Association of Vertebrate Paleontologist tschopp__mateus_2012_sternal_plate_sauropod_portugal.pdf
Tschopp, E., Mateus O., & Benson R. B. J. (2015).  A specimen-level phylogenetic analysis and taxonomic revision of Diplodocidae (Dinosauria, Sauropoda). PeerJ. 3, e857., 4 Abstracttschopp_et_al_2015_brontosaurus_peerj-857.pdfWebsite

Diplodocidae are among the best known sauropod dinosaurs. Several species were described in the late 1800s or early 1900s from the Morrison Formation of North America. Since then, numerous additional specimens were recovered in the USA, Tanzania, Portugal, and Argentina, as well as possibly Spain, England, Georgia, Zimbabwe, and Asia. To date, the clade includes about 12 to 15 nominal species, some of them with questionable taxonomic status (e.g., ‘\textit{Diplodocus}’ \textit{hayi} or \textit{Dyslocosaurus polyonychius}), and ranging in age from Late Jurassic to Early Cretaceous. However, intrageneric relationships of the iconic, multi-species genera \textit{Apatosaurus} and \textit{Diplodocus} are still poorly known. The way to resolve this issue is a specimen-based phylogenetic analysis, which has been previously implemented for \textit{Apatosaurus}, but is here performed for the first time for the entire clade of Diplodocidae.The analysis includes 81 operational taxonomic units, 49 of which belong to Diplodocidae. The set of OTUs includes all name-bearing type specimens previously proposed to belong to Diplodocidae, alongside a set of relatively complete referred specimens, which increase the amount of anatomically overlapping material. Non-diplodocid outgroups were selected to test the affinities of potential diplodocid specimens that have subsequently been suggested to belong outside the clade. The specimens were scored for 477 morphological characters, representing one of the most extensive phylogenetic analyses of sauropod dinosaurs. Character states were figured and tables given in the case of numerical characters.The resulting cladogram recovers the classical arrangement of diplodocid relationships. Two numerical approaches were used to increase reproducibility in our taxonomic delimitation of species and genera. This resulted in the proposal that some species previously included in well-known genera like \textit{Apatosaurus} and \textit{Diplodocus} are generically distinct. Of particular note is that the famous genus \textit{Brontosaurus} is considered valid by our quantitative approach. Furthermore, “\textit{Diplodocus}” hayi represents a unique genus, which will herein be called \textit{Galeamopus} gen. nov. On the other hand, these numerical approaches imply synonymization of “\textit{Dinheirosaurus}” from the Late Jurassic of Portugal with the Morrison Formation genus \textit{Supersaurus}. Our use of a specimen-, rather than species-based approach increases knowledge of intraspecific and intrageneric variation in diplodocids, and the study demonstrates how specimen-based phylogenetic analysis is a valuable tool in sauropod taxonomy, and potentially in paleontology and taxonomy as a whole.

Tschopp, E., Mateus O., & Benson R. B. J. (2015).  A specimen-level phylogenetic analysis and taxonomic revision of Diplodocidae (Dinosauria, Sauropoda). {PeerJ}. 3, e857.: {PeerJ} AbstractWebsite
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Tschopp, E., Mateus O., Kosma R., Sander M., Joger U., & Wings O. (2014).  A specimen-level cladistic analysis of Camarasaurus (Dinosauria, Sauropoda) and a revision of camarasaurid taxonomy. Journal of Vertebrate Paleontology. Program and Abstracts, 2014, 241-242.tschopp_et_al._2014_a_specimen-level_cladistic_analysis_of_camarasaurus.pdf
Tschopp, E., & Mateus O. (2013).  The skull and neck of a new flagellicaudatan sauropod from the Morrison Formation and its implication for the evolution and ontogeny of diplodocid dinosaurs. Journal of Systematic Palaeontology. 11(7), 853–888. Abstracttschopp__mateus_2013_the_skull_and_neck_of_a_new_flagellicaudatan_sauropod_from_the_morrison.pdfWebsite

A new taxon of diplodocid sauropod, Kaatedocus siberi gen. et sp. nov., is recognized based on well-preserved cervical vertebrae and skull from the Morrison Formation (Kimmeridgian, Late Jurassic) of northern Wyoming, USA. A phylogenetic analysis places it inside Diplodocinae (Sauropoda: Flagellicaudata: Diplodocidae), as a sister taxon to a clade uniting Tornieria africana and the classical diplodocines Barosaurus lentus and Diplodocus. The taxon is diagnosed by a unique combination of plesiomorphic and derived traits, as well as the following unambiguous autapomorphies within Diplodocidae: frontals separated anteriorly by a U-shaped notch; squamosals restricted to the post-orbital region; presence of a postparietal foramen; a narrow, sharp and distinct sagittal nuchal crest; the paired basal tuber with a straight anterior edge in ventral view; anterior end of the prezygapophyses of mid- and posterior cervical vertebrae is often an anterior extension of the pre-epipophysis, which projects considerably anterior to the articular facet; anterodorsal corner of the lateral side of the posterior cervical vertebrae marked by a rugose tuberosity; posterior margin of the prezygapophyseal articular facet of posterior cervical vertebrae bordered posteriorly by conspicuous transverse sulcus; posterior cervical neural spines parallel to converging. The inclusion of K. siberi and several newly described characters into a previously published phylogenetic analysis recovers the new taxon as basal diplodocine, which concurs well with the low stratigraphical position of the holotype specimen. Dinheirosaurus and Supersaurus now represent the sister clade to Apatosaurus and Diplodocinae and therefore the most basal diplodocid genera. The geographical location in the less known northern parts of the Morrison Fm., where K. siberi was found, corroborates previous hypotheses on faunal provinces within the formation. The probable subadult ontogenetic stage of the holotype specimen allows analysis of ontogenetic changes and their influence on diplodocid phylogeny.

Holwerda, F., Tschopp E., & Mateus O. (2014).  Sauropod body fossils in Europe: overview and current issues. XII EAVP Meeting XII Annual Meeting of the European Association of Vertebrate Palaeontologists – Abstract Book. p.77., Torino 24-28 June 2014holwerda_et_al_2014_sauropods_europe_eavp.pdf
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Young, M. T., Hua S., Steel L., Foffa D., Brusatte S. L., Thüring S., Mateus O., Ignacio-Ruiz Omeñaca J., Lepage Y., Havilk P., & Andrade M. B. (2014).  Revision of the Late Jurassic teleosaurid genus Machimosaurus (Crocodylomorpha, Thalattosuchia). Royal Society Open Science. 1(140222), 1-42.young_et_al_2014_machimosaurus_crocodylomorph_revision.pdf
Young, M. T., Hua S., Steel L., Foffa D., Brusatte S. L., Thüring S., Mateus O., Ruiz-Omeñaca J. I., Havlik P., Lepage Y., & De Andrade M. B. (2014).  Revision of the Late Jurassic teleosaurid genus Machimosaurus (Crocodylomorpha, Thalattosuchia). Royal Society Open Science. 1, , Number 2 Abstract
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Ceríaco, L. M. P., Gutiérrez E. E., Dubois A., Abdala C. S., Alqarni A. S., Adler K., et al. (2016).  Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences. Zootaxa. 4196(3), 435 - 445., 2016 AbstractWebsite
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Ceríaco, L. M. P., Gutiérrez E. E., Dubois A., Abdala C. S., Alqarni A. S., Adler K., et al. (2016).  Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences. Zootaxa. 4196, 435-445., Number 3 Abstract
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Myers, T. S., Tabor N. J., Jacobs L. L., & Mateus O. (2012).  Palaeoclimate of the Late Jurassic of Portugal: Comparison with the Western United States. Sedimentology. 59(6), 1695–1717., 2012//01/ Abstractmyers_et_al_2012_palaeoclimate_of_the_late_jurassic_of_portugal_comparison_with_the_western.pdfWebsite

Investigation of the palaeoclimatic conditions associated with Upper Jurassic strata in Portugal and comparison with published palaeoclimate reconstructions of the Upper Jurassic Morrison Formation in western North America provide important insights into the conditions that allowed two of the richest terrestrial faunas of this period to flourish. Geochemical analyses and observations of palaeosol morphology in the informally named Upper Jurassic Lourinhã formation of western Portugal indicate warm and wet palaeoclimatic conditions with strongly seasonal precipitation patterns. Palaeosol profiles are dominated by carbonate accumulations and abundant shrink-swell (vertic) features that are both indicative of seasonal variation in moisture availability. The δ18OSMOW and δDSMOW values of phyllosilicates sampled from palaeosol profiles range from +22·4‰ to +22·7‰ and −53·0‰ to −37·3‰, respectively. These isotope values correspond to temperatures of formation between 32°C and 39°C ± 3°, with an average of 36°C, which suggest surface temperatures between 27°C and 34°C (average 31°C). On average, these surface temperature estimates are 1°C higher than the highest summer temperatures modelled for Late Jurassic Iberia using general circulation models. Elemental analysis of matrix material from palaeosol B-horizons provides proxy (chemical index of alteration minus potassium) estimates of mean annual precipitation ranging from 766 to 1394 mm/year, with an average of approximately 1100 mm/year. Palaeoclimatic conditions during deposition of the Lourinhã formation are broadly similar to those inferred for the Morrison Formation, except somewhat wetter. Seasonal variation in moisture availability does not seem to have negatively impacted the ability of these environments to support rich and relatively abundant faunas. The similar climate between these two Late Jurassic terrestrial ecosystems is probably one of the factors which explains the similarity of their vertebrate faunas.

Myers, T. S., Tabor N. J., Jacobs L. L., & Mateus O. (2012).  Palaeoclimate of the late jurassic of portugal: Comparison with the western united states. Sedimentology. 59, 1695-1717., Number 6 Abstract
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Tschopp, E., Tschopp F. A., & Mateus O. (2017).  Overlap Indices: Tools to quantify the amount of anatomical overlap among groups of incomplete terminal taxa in phylogenetic analyses. Acta Zoologica. 99(2), 169-176. Abstracttschopp_et_al-2017-acta_zoologica_overlap_indices_tools_to_quantify_the_amount.pdfWebsite

Phylogenetic analyses of morphological data are often characterized by missing data due to incomplete operational taxonomic units, as in fossils. This incomplete knowledge derives from various reasons, including—in the case of fossils—the numerous filters an organism has to pass through during taphonomy, fossilization, weathering and collecting. Whereas several methods have been proposed to address issues raised by the inclusion of incomplete terminal taxa, until recently no tool existed to easily quantify the amount of anatomical overlap within a particular clade. The Overlap Indices provide such values and might prove useful for comparative cladistics. We herein describe these new indices and their applications in detail and provide an example file for their calculation. A case study of diplodocid sauropod dinosaurs shows how the Overlap Indices will help to explore and quantify, which one of a number of conflicting tree topologies is supported by more anatomical traits, which skeletal regions are underrepresented in a particular phylogenetic matrix, and which taxon would improve character state score completeness.

Tschopp, {E. D. }, Tschopp {F. A. }, & Mateus O. (2017).  Overlap Indices: Tools to quantify the amount of anatomical overlap among groups of incomplete terminal taxa in phylogenetic analyses. Acta Zoologica. 99, 169–176., 6, Number 2: Wiley-Blackwell Abstract

Phylogenetic analyses of morphological data are often characterized by missing data due to incomplete operational taxonomic units, as in fossils. This incomplete knowledge derives from various reasons, including—in the case of fossils—the numerous filters an organism has to pass through during taphonomy, fossilization, weathering and collecting. Whereas several methods have been proposed to address issues raised by the inclusion of incomplete terminal taxa, until recently no tool existed to easily quantify the amount of anatomical overlap within a particular clade. The Overlap Indices provide such values and might prove useful for comparative cladistics. We herein describe these new indices and their applications in detail and provide an example file for their calculation. A case study of diplodocid sauropod dinosaurs shows how the Overlap Indices will help to explore and quantify, which one of a number of conflicting tree topologies is supported by more anatomical traits, which skeletal regions are underrepresented in a particular phylogenetic matrix, and which taxon would improve character state score completeness.

Tschopp, E., Tschopp F. A., & Mateus O. (2017).  The Overlap Index, a tool to quantify the amount of anatomical overlap among groups of incomplete terminal taxa in phylogenetic analyses. Journal of Vertebrate Paleontology, Program and Abstracts. 2017, 205-206. Abstract
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Mateus, O., Carrano M. T., & Taquet P. (2012).  Osteology of the embryonic theropods from the Late Jurassic of Paimogo, Portugal. Journal of Vertebrate Paleontology, Program and Abstracts, 2012, p.137. ISSN 1937-2809. 137.mateus_et_al_2012_embryos_paimogo_portugal_svp_2012_abstract_book_meeting_abstracts.pdf.pdf
Tschopp, E., & Mateus O. (2017).  Osteology of Galeamopus pabsti sp. nov. (Sauropoda: Diplodocidae), with implications for neurocentral closure timing, and the cervico-dorsal transition in diplodocids. PeerJ. 5, e3179. Abstracttschopp__mateus_2017_osteology_of_galeamopus_pabsti_sp.__nov._sauropoda__diplodocidae_.pdfWebsite

Diplodocids are among the best known sauropod dinosaurs. Numerous specimens of currently 15 accepted species belonging to ten genera have been reported from the Late Jurassic to Early Cretaceous of North and South America, Europe, and Africa. The highest diversity is known from the Upper Jurassic Morrison Formation of the western United States: a recent review recognized 12 valid, named species, and possibly three additional, yet unnamed ones. One of these is herein described in detail and referred to the genus \textit{Galeamopus}. The holotype specimen of \textit{Galeamopus pabsti} sp. nov., SMA 0011, is represented by material from all body parts but the tail, and was found at the Howe-Scott Quarry in the northern Bighorn Basin in Wyoming, USA. Autapomorphic features of the new species include a horizontal canal on the maxilla that connects the posterior margin of the preantorbital and the ventral margin of the antorbital fenestrae, a vertical midline groove marking the sagittal nuchal crest, the presence of a large foramen connecting the postzygapophyseal centrodiapophyseal fossa and the spinopostzygapophyseal fossa of mid- and posterior cervical vertebrae, a very robust humerus, a laterally placed, rugose tubercle on the concave proximal portion of the anterior surface of the humerus, a relatively stout radius, the absence of a distinct ambiens process on the pubis, and a distinctly concave posteroventral margin of the ascending process of the astragalus. In addition to the holotype specimen SMA 0011, the skull USNM 2673 can also be referred to \textit{Galeamopus pabsti}. Histology shows that the type specimen SMA 0011 is sexually mature, although neurocentral closure was not completed at the time of death. Because SMA 0011 has highly pneumatized cervical vertebrae, the development of the lamination appears a more important indicator for individual age than neurocentral fusion patterns. SMA 0011 is one of very few sauropod specimens that preserves the cervico-dorsal transition in both vertebrae and ribs. The association of ribs with their respective vertebrae shows that the transition between cervical and dorsal vertebrae is significantly different in \textit{Galeamopus pabsti} than in \textit{Diplodocus carnegii} or \textit{Apatosaurus louisae}, being represented by a considerable shortening of the centra from the last cervical to the first dorsal vertebra. Diplodocids show a surprisingly high diversity in the Morrison Formation. This can possibly be explained by a combination of geographical and temporal segregation, and niche partitioning.

Mateus, O., Jacobs L., Polcyn M., Schulp A. S., Vineyard D., Buta Neto A., & Telles Antunes M. (2009).  The oldest African eucryptodiran turtle from the Cretaceous of Angola. Acta Palaeontologica Polonica. 54, 581-588., Number 4 Abstract
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Jacobs, L. L., Mateus O., Polcyn M. J., Schulp A. S., Antunes M. T., Morais M. L., & Tavares T. S. (2006).  The occurrence and geological setting of Cretaceous dinosaurs, mosasaurs, plesiosaurs, and turtles from Angola. Journal of the Paleontological Society of Korea. 22, , Number 1 Abstract
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Puértolas-Pascual, E., Marx M., Mateus O., Saleiro A., Fernandes A. E., Marinheiro J., Tomás C., & Mateus S. (2021).  A new plesiosaur from the Lower Jurassic of Portugal and the early radiation of Plesiosauroidea. Acta Palaeontologica Polonica. 66(2), 369-388. Abstracta_new_plesiosaur_from_the_lower_jurassic_of_portugal_and_the_early_radiation_of_plesiosauroidea.pdfWebsite

A new plesiosaur partial skeleton, comprising most of the trunk and including axial, limb, and girdle bones, was collected in the lower Sinemurian (Coimbra Formation) of Praia da Concha, near São Pedro de Moel in central west Portugal. The specimen represents a new genus and species, Plesiopharos moelensis gen. et sp. nov. Phylogenetic analysis places this taxon at the base of Plesiosauroidea. Its position is based on this exclusive combination of characters: presence of a straight preaxial margin of the radius; transverse processes of mid-dorsal vertebrae horizontally oriented; ilium with sub-circular cross section of the shaft and subequal anteroposterior expansion of the dorsal blade; straight proximal end of the humerus; and ventral surface of the humerus with an anteroposteriorly long shallow groove between the epipodial facets. In addition, the new taxon has the following autapomorphies: iliac blade with less expanded, rounded and convex anterior flank; highly developed ischial facet of the ilium; apex of the neural spine of the first pectoral vertebra inclined posterodorsally with a small rounded tip. This taxon represents the most complete and the oldest plesiosaur species in the Iberian Peninsula. It is also the most complete, best preserved, and oldest marine vertebrate in the region and testifies to the incursion of marine reptiles in the newly formed proto-Atlantic sea, prior to the Atlantic Ocean floor spreading in the Early Cretaceous.

Schulp, A. S., Polcyn M. J., Mateus O., Jacobs L. L., Morais L. M., & Tavares T. S. (2006).  New mosasaur material from the Maastrichtian of Angola, with notes on the phylogeny, distribution and palaeoecology of the genus Prognathodon. Publicaties van het Natuurhistorisch Genootschap in Limburg Reeks XLV aflevering 1. Stichting Natuurpublicaties Limburg, Maastricht . 57-67 .schulp_polcyn_mateus_jacobs_et_al_2006_new_mosasaur_material_from_the_maastrichtian_of_angola_with_notes_on_the_phylogeny_distribution_and_palaeoecology_of_the_genus_prognathodon.pdf
Schulp, A. S., Polcyn M. J., Mateus O., Jacobs L. L., Morais M. L., & Tavares T. S. (2006).  New mosasaur material from the Maastrichtian of Angola, with notes on the phylogeny, distribution and palaeoecology of the genus Prognathodon. Publicaties van het Natuurhistorisch Genootschap in Limburg Reeks XLV aflevering 1. Stichting Natuurpublicaties Limburg, Maastricht. 57-67. Abstract
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Allain, R., Taquet P., Battail B., Dejax J., Richir P., Véran M., Limon-Duparcmeur F., & et al (1999).  A new genus of sauropod dinosaur from the Gres superieurs formation (Aptian-Albian) of Laos | Un nouveau genre de dinosaure sauropode de la formation des Gres superieurs (Aptien-Albien) du Laos. Comptes Rendus de l'Academie de Sciences - Serie IIa: Sciences de la Terre et des Planetes. 329, 609–616., Number 8 Abstract
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Allain, R., Taquet P., Battail B., Dejax J., Richir P., Veran M., Limon-Duparcmeur F., & et al (1999).  A new genus of sauropod dinosaur from the Gres superieurs formation (Aptian-Albian) of Laos. Comptes Rendus de l'Academie des Sciences Series IIA Earth and Planetary Science. 329, 609–616., Number 8 Abstract
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Conti, S., Tschopp E., Sala G., & Mateus O. (2021).  Multibody simulations of diplodocid tail motion. Annual conference of the European Association of Vertebrate Palaeontologists. , 5th-9th July : European Association of Vertebrate Palaeontologistsconti_et_al_2021_diplodocid_tail._eavp_abstract.pdf
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Mateus,  O., de da Terra D. C. T. D. C. -, & e GeoBioTec - Geobiociências G. G. (2014).  The Late Triassic of Jameson Land revisited. Abstract
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Tschopp, E., Mateus O., Marzola M., & Norell M. (2018).  Indications for a horny beak and extensive supraorbital connective tissue in diplodocid sauropods. Annual Meeting of the Society of Vertebrate Paleontology. 229.: Society of Vertebrate Paleontologytschopp_et_al_2018_svp_abstract.pdf
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de Ricqlès, A., Mateus O., Antunes M. T., & Taquet P. (2001).  Histomorphogenesis of embryos of Upper Jurassic theropods from Lourinhã (Portugal) | Histomorphogenèse du squelette d'embryons de dinosaures théropodes du Jurassique supérieur de Lourinhã (Portugal). Comptes Rendus de l'Academie de Sciences - Serie IIa: Sciences de la Terre et des Planetes. 332, 647–656., Number 10 Abstract
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de Ricqlès, A., Mateus O., Antunes M. T., & Taquet P. (2001).  Histomorphogenesis of embryos of Upper Jurassic Theropods from Lourinha (Portugal). Comptes Rendus De L Academie Des Sciences Serie Ii Fascicule a-Sciences De La Terre Et Des Planetes. 332, 647-656., Jan Abstractricqles_mateus_et_al_2011_histomorphogenesis_of_embryos_of_upper_jurassic_theropods_from_lourinha_portugal.pdfWebsite

Remains of dinosaurian embryos, hatchlings and early juveniles are currently the subject of increasing interest, as new discoveries and techniques now allow to analyse palaeobiological subjects such as growth and life history strategies of dinosaurs. So far, available ‘embryonic’ material mainly involved Ornithopods and some Theropods of Upper Cretaceous age. We describe here the histology of several bones (vertebrae, limb bones) from the tiny but exceptionally well preserved in ovo remains of Upper Jurassic Theropod dinosaurs from the Paimogo locality near Lourinhã (Portugal). This Jurassic material allows to extend in time and to considerably supplement in great details our knowledge of early phases of growth in diameter and in length of endoskeletal bones of various shape, as well as shape modelling among carnivorous dinosaurs. Endochondral ossification in both short and long bones involves extensive pads of calcified cartilages permeated by marrow buds. We discuss the likely occurrence of genuine cartilage canals in dinosaurs and of an avian-like ‘medullary cartilaginous cone’ in Theropods. Patterns of periosteal ossification suggest high initial growth rates (20 μ m·day−1 or more), at once modulated by precise and locally specific changes in rates of new bone deposition. The resulting very precise shape modelling appears to start early and to involve at once some biomechanical components.

de Ricqlès, A., Mateus O., Antunes M. T., & Taquet P. (2001).  Histomorphogenesis of embryos of Upper Jurassic Theropods from Lourinhã (Portugal). Comptes Rendus de l{\textquotesingle}Académie des Sciences - Series {IIA} - Earth and Planetary Science. 332, 647–656., may, Number 10: Elsevier {BV} AbstractWebsite
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de Ricqlès, A., Mateus O., Antunes M. T., & Taquet P. (2001).  Histomorphogenesis of embryos of Upper Jurassic theropods from Lourinhã (Portugal). Comptes Rendus de l'Académie des Sciences-Series IIA-Earth and Planetary Science. 332, 647–656., Number 10 Abstract
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Strganac, C., Jacobs L., Polcyn M., Mateus O., Myers T., Araújo R., Fergunson K. M., Gonçalves A. O., Morais M. L., Schulp A. S., da Tavares T. S., & Salminen J. (2015).  Geological Setting and Paleoecology of the Upper Cretaceous Bench 19 Marine Vertebrate Bonebed at Bentiaba, Angola. Netherlands Journal of Geosciences. 94(1), 121-136. Abstractstrganac_et_al_2014_geological_setting_bentiaba_angola.pdfWebsite

The Bench 19 Bonebed at Bentiaba, Angola, is a unique concentration of marine vertebrates preserving six species of mosasaurs in sediments best correlated by magnetostratigraphy to chron C32n.1n between 71.4 and 71.64 Ma. The bonebed formed at a paleolatitude near 24°S, with an Atlantic width at that latitude approximating 2700 km, roughly half that of the current width. The locality lies on an uncharacteristically narrow continental shelf near transform faults that controlled the coastal outline of Africa in the formation of the South Atlantic Ocean. Biostratigraphic change through the Bentiaba section indicates that the accumulation occurred in an ecological time dimension within the 240 ky bin delimited by chron 32n.1n. The fauna occurs in a 10 m sand unit in the Mocuio Formation with bones and partial skeletons concentrated in, but not limited to, the basal 1–2 m. The sediment entombing the fossils is an immature feldspathic sand shown by detrital zircon ages to be derived from nearby granitic shield rocks. Specimens do not appear to have a strong preferred orientation and they are not concentrated in a strand line. Stable oxygen isotope analysis of associated bivalve shells indicates a water temperature of 18.5°C. The bonebed is clearly mixed with scattered dinosaur and pterosaur elements in a marine assemblage. Gut contents, scavenging marks and associated shed shark teeth in the Bench 19 Fauna indicate biological association and attrition due to feeding activities. The ecological diversity of mosasaur species is shown by tooth and body-size disparity and by δ13C analysis of tooth enamel, which indicate a variety of foraging areas and dietary niches. The Bench 19 Fauna was formed in arid latitudes along a coastal desert similar to that of modern Namibia on a narrow, tectonically controlled continental shelf, in shallow waters below wave base. The area was used as a foraging ground for diverse species, including molluscivorus Globidens phosphaticus, small species expected near the coast, abundant Prognathodon kianda, which fed on other mosasaurs at Bench 19, and species that may have been transient and opportunistic feeders in the area.

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Mallison, H., Schwarz-Wings D., Tsai H., Holliday C., & Mateus O. (2014).  Fossil longbone cartilage preserved in stegosaurs?. Journal of Vertebrate Paleontology. Program and Abstracts, 2014, 176.mallison_et_al._2014_fossil_longbone_cartilage_preserved_in_stegosaurs.pdf
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Tschopp, E., & Mateus O. (2012).  Evidence for presence of clavicles and interclavicles in sauropod dinosaurs and its implications on the furcula-clavicle homology. Journal of Vertebrate Paleontology, Program and Abstracts, 2012, 184. ISSN 1937-2809 . 184. Abstracttschopp__mateus_2012_interclavicles_clavicles_svp_2012_abstract.pdf

Clavicles and interclavicles are plesiomorphically present in Reptilia. However, several groups show reduction or even loss of these elements. Crocodylimorpha, e.g., lost the clavicles, whereas dinosaurs are generally interpreted to only preserve the clavicles, the theropod furcula representing an unique case of fused clavicles. In sauropods, reports of clavicles are relatively frequent in non-titanosauriforms. These elements are elongated, curved, and rather stout bones with a spatulate and a bifurcate end. However, they were always found as single bones, and differ from the relatively short and unbifurcated clavicles found articulated with the scapulae of basal sauropodomorphs.
Elements from the Howe Quarry (Late Jurassic; Wyoming, USA) shed new light on these interpretations. Besides the elongated, curved bones (herein named morphotype A), also pairs of symmetric, L-shaped bones were recovered (morphotype B), associated with diplodocid dorsal and cervical vertebrae. Elements resembling morphotype B - articulated between the scapulae - have recently been reported from a diplodocid found near Tensleep, Wyoming. Taphonomic evidence, as well as the fact that they were preserved in symmetrical pairs, therefore implies that morphotype B represents the true sauropod clavicles.
Contrary to earlier reports, morphotype A elements from the Howe Quarry, as well as of previously reported specimens show a symmetry plane following the long axis of the elements. It is thus possible that the morphotype A elements were single bones from the body midline. The only such element present in the pectoral girdle of tetrapods are the interclavicle and the furcula. Comparison with crocodilian and lacertiform interclavicles indicates that the bifurcate end of the sauropod elements might represent the reduced transverse processes of the anterior end, and the spatulate end would have covered the coracoids or sternal plates ventrally.
The presence of both clavicles and interclavicles in the pectoral girdle stiffens the anterior trunk, and enhances considerably its stability. Such an enforcement might have been needed in diplodocids due to the strong lateral forces induced to the fore-limbs by the posteriorly placed center of mass (due to shorter fore- than hind-limbs), as well as lateral movements of the enormously elongated necks and tails. The absence of clavicles and interclavicles in titanosauriforms coincides with the development of wide-gauge locomotion style.
The presence of interclavicles in sauropods supports the recently proposed homology of the furcula with the interclavicle, instead of representing fused clavicles. Interclavicles were thus not lost, but may have remained cartilaginous or have yet to be found in basal dinosauriforms.

Mateus, O., & The Gigantic dinosaur E. (2006).  The European Enigmatic Dinosaur Evolution (in Japanese). Abstract
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Myers, T. S., Tabor N. J., Jacobs L. L., & Mateus O. (2012).  Estimating soil pCO2 using paleosol carbonates: implications for the relationship between primary productivity and faunal richness in ancient terrestrial ecosystems. Paleobiology. 38(4), 585–604. Abstractmyers_et_al_2012_estimating_soil_paleosols_portugal.pdf

In this paper we present a method for estimating soil pCO2 in ancient environments using the measured carbon-isotope values of pedogenic carbonates and plant-derived organic matter. The validity of soil pCO2 estimates proves to be highly dependent on the organic δ13C values used in the calculations. Organic matter should be sourced from the same paleosol profiles as sampled carbonates to yield the most reliable estimates of soil pCO2. In order to demonstrate the potential use of soil pCO2 estimates in paleoecological and paleoenvironmental studies, we compare samples from three Upper Jurassic localities. Soil pCO2 estimates, interpreted as a qualitative indicator of primary paleoproductivity, are used to rank the Late Jurassic terrestrial environments represented by the Morrison Formation in western North America, the informally named Lourinhã formation in Western Europe, and the Stanleyville Group in Central Africa. Because modern terrestrial environments show a positive correlation between primary productivity and faunal richness, a similar relationship is expected in ancient ecosystems. When the relative paleoproductivity levels inferred for each study area are compared with estimates of dinosaur generic richness, a positive correlation emerges. Both the Morrison and Lourinhã formations have high inferred productivity levels and high estimated faunal richness. In contrast, the Stanleyville Group appears to have had low primary productivity and low faunal richness. Paleoclimatic data available for each study area indicate that both productivity and faunal richness are positively linked to water availability, as observed in modern terrestrial ecosystems.

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Tschopp, E., & Mateus O. (2016).  Diplodocus Marsh, 1878 (Dinosauria, Sauropoda): proposed designation of D. carnegii Hatcher, 1901 as the type species. Bulletin of Zoological Nomenclature. 73(1), 17-24. Abstracttschopp_mateus_2016_-_case_3700_-_diplodocus_type.pdf

The purpose of this application, under Articles 78.1 and 81.1 of the Code, is to replace Diplodocus longus Marsh, 1878 as the type species of the sauropod dinosaur genus Diplodocus by the much better represented D. carnegii Hatcher, 1901, due to the undiagnosable state of the holotype of D. longus (YPM 1920, a partial tail and a chevron). The holotype of D. carnegii, CM 84, is a well-preserved and mostly articulated specimen. Casts of it are on display in various museums around the world, and the species has generally been used as the main reference for studies of comparative anatomy or phylogeny of the genus. Both species are known from the Upper Jurassic Morrison Formation of the western United States. The genus Diplodocus is the basis for the family-level taxa diplodocinae Marsh, 1884, diplodocidae Marsh, 1884, diplodocimorpha Marsh, 1884 (Calvo & Salgado, 1995) and diplodocoidea Marsh, 1884 (Upchurch, 1995). It is also a specifier of at least 10 phylogenetic clades. With the replacement of D. longus by D. carnegii as type species, Diplodocus could be preserved as a taxonomic name with generally accepted content. Taxonomic stability of the entire clade diplodocoidea, and the proposed definitions of several clades within Sauropoda, could be maintained.

Tschopp, E., & Mateus O. (2016).  Diplodocus Marsh, 1878 (Dinosauria, Sauropoda): proposed designation of D. carnegii Hatcher, 1901 as the type species. Bulletin of Zoological Nomenclature. 73, 17-24. Abstract
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