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2013
a. a. Ghumman, C., M. C. a. Moutinho, A. Santos, A. Tolstogouzov, and O. M. N. D. Teodoro. "{TOF-SIMS VG Ionex IX23LS: upgrade and application for the urinary stones analysis}." Surface and Interface Analysis. 45 (2013): 532-536. AbstractWebsite

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2012
Safari, L., P. Amaro, S. Fritzsche, J. P. Santos, S. Tashenov, and F. Fratini. "Relativistic polarization analysis of Rayleigh scattering by atomic hydrogen." Phys. Rev. A. 86 (2012): 043405. AbstractWebsite

A relativistic analysis of the polarization properties of light elastically scattered by atomic hydrogen is performed, based on the Dirac equation and second-order perturbation theory. The relativistic atomic states used for the calculations are obtained by making use of the finite basis set method and are expressed in terms of B splines and B polynomials. We introduce two experimental scenarios in which the light is circularly and linearly polarized, respectively. For each of these scenarios, the polarization-dependent angular distribution and the degrees of circular and linear polarization of the scattered light are investigated as a function of scattering angle and photon energy. Analytical expressions are derived for the polarization-dependent angular distribution which can be used for scattering by both hydrogenic as well as many-electron systems. Detailed computations are performed for Rayleigh scattering by atomic hydrogen within the incident photon energy range 0.5 to 5 keV. Particular attention is paid to the effects that arise from higher (nondipole) terms in the expansion of the electron-photon interaction.

Safari, L., P. Amaro, S. Fritzsche, J. P. Santos, S. Tashenov, and F. Fratini. "Relativistic polarization analysis of Rayleigh scattering by atomic hydrogen." Physical Review A. 86 (2012): 043405. AbstractWebsite

A relativistic analysis of the polarization properties of light elastically scattered by atomic hydrogen is performed, based on the Dirac equation and second-order perturbation theory. The relativistic atomic states used for the calculations are obtained by making use of the finite basis set method and are expressed in terms of B splines and B polynomials. We introduce two experimental scenarios in which the light is circularly and linearly polarized, respectively. For each of these scenarios, the polarization-dependent angular distribution and the degrees of circular and linear polarization of the scattered light are investigated as a function of scattering angle and photon energy. Analytical expressions are derived for the polarization-dependent angular distribution which can be used for scattering by both hydrogenic as well as many-electron systems. Detailed computations are performed for Rayleigh scattering by atomic hydrogen within the incident photon energy range 0.5 to 5 keV. Particular attention is paid to the effects that arise from higher (nondipole) terms in the expansion of the electron-photon interaction.

Pereira, AS, C. G. Timoteo, M. Guilherme, F. Folgosa, S. G. Naik, A. G. Duarte, BH HUYNH, and P. Tavares. "Spectroscopic evidence for and characterization of a trinuclear ferroxidase center in bacterial ferritin from Desulfovibrio vulgaris Hildenborough." Journal of the American Chemical Society. 134 (2012): 10822-32. AbstractWebsite

Ferritins are ubiquitous and can be found in practically all organisms that utilize Fe. They are composed of 24 subunits forming a hollow sphere with an inner cavity of ~80 A in diameter. The main function of ferritin is to oxidize the cytotoxic Fe(2+) ions and store the oxidized Fe in the inner cavity. It has been established that the initial step of rapid oxidation of Fe(2+) (ferroxidation) by H-type ferritins, found in vertebrates, occurs at a diiron binding center, termed the ferroxidase center. In bacterial ferritins, however, X-ray crystallographic evidence and amino acid sequence analysis revealed a trinuclear Fe binding center comprising a binuclear Fe binding center (sites A and B), homologous to the ferroxidase center of H-type ferritin, and an adjacent mononuclear Fe binding site (site C). In an effort to obtain further evidence supporting the presence of a trinuclear Fe binding center in bacterial ferritins and to gain information on the states of the iron bound to the trinuclear center, bacterial ferritin from Desulfovibrio vulgaris (DvFtn) and its E130A variant was loaded with substoichiometric amounts of Fe(2+), and the products were characterized by Mossbauer and EPR spectroscopy. Four distinct Fe species were identified: a paramagnetic diferrous species, a diamagnetic diferrous species, a mixed valence Fe(2+)Fe(3+) species, and a mononuclear Fe(2+) species. The latter three species were detected in the wild-type DvFtn, while the paramagnetic diferrous species was detected in the E130A variant. These observations can be rationally explained by the presence of a trinuclear Fe binding center, and the four Fe species can be properly assigned to the three Fe binding sites. Further, our spectroscopic data suggest that (1) the fully occupied trinuclear center supports an all ferrous state, (2) sites B and C are bridged by a mu-OH group forming a diiron subcenter within the trinuclear center, and (3) this subcenter can afford both a mixed valence Fe(2+)Fe(3+) state and a diferrous state. Mechanistic insights provided by these new findings are discussed and a minimal mechanistic scheme involving O-O bond cleavage is proposed.

Amaro, Pedro, Sophie Schlesser, Mauro Guerra, Eric-Olivier Le Bigot, Jean-Michel Isac, Pascal Travers, Jose Paulo Santos, Csilla Szabo, Alexandre Gumberidze, and Paul Indelicato. "Absolute Measurement of the Relativistic Magnetic Dipole Transition Energy in Heliumlike Argon." Phys. Rev. Lett.. 109 (2012): 043005. AbstractWebsite

The 1s2s 3S1 ! 1s2 1S0 relativistic magnetic dipole transition in heliumlike argon, emitted by the plasma of an electron-cyclotron resonance ion source, has been measured using a double-flat crystal x-ray spectrometer. Such a spectrometer, used for the first time on a highly charged ion transition, provides absolute (reference-free) measurements in the x-ray domain. We find a transition energy of 3104.1605(77) eV (2.5 ppm accuracy). This value is the most accurate, reference-free measurement done for such a transition and is in good agreement with recent QED predictions.

Amaro, Pedro, Sophie Schlesser, Mauro Guerra, Eric-Olivier Le Bigot, Jean-Michel Isac, Pascal Travers, Jose Paulo Santos, Csilla Szabo, Alexandre Gumberidze, and Paul Indelicato. "Absolute Measurement of the Relativistic Magnetic Dipole Transition Energy in Heliumlike Argon." Physical Review Letters. 109 (2012): 043005. AbstractWebsite

The 1s2s 3S1 - 1s2 1S0 relativistic magnetic dipole transition in heliumlike argon, emitted by the plasma of an electron-cyclotron resonance ion source, has been measured using a double-flat crystal x-ray spectrometer. Such a spectrometer, used for the first time on a highly charged ion transition, provides absolute (reference-free) measurements in the x-ray domain. We find a transition energy of 3104.1605(77) eV (2.5 ppm accuracy). This value is the most accurate, reference-free measurement done for such a transition and is in good agreement with recent QED predictions.

Parreira, P., E. Torres, C. Nunes, Nunes C. de Carvalho, G. Lavareda, A. Amaral, and M. J. Brites. "Dye-sensitized 1D anatase TiO2 nanorods for tunable efficient photodetection in the visible range." SENSORS AND ACTUATORS B-CHEMICAL. 161 (2012): 901-907. Abstract

TiO2 films with enhanced photosensitivity were deposited on alkali free glass substrates without intentional substrate heating by pulsed DC magnetron reactive sputtering with an average thickness of about 2 mu m. Three dyes, commercial N719 and two new organic dyes were impregnated in order to control the optical spectral selectivity of such films. The type of dye used proved to dramatically influence the device's response to radiation pulses. The practical breakthrough is the use of different dyes according to the region of the electromagnetic spectrum one wants to detect. Devices with photocurrent 6 orders of magnitude higher than the dark current (from similar to 2 x 10(-12) to 2 x 10(-6) A for a 100 V bias) were fabricated with a spectral response within the visible range of the electromagnetic spectrum. In addition, this approach is likely to allow for the fabrication of hybrid photodetectors on cheap heat sensible flexible polymeric substrates. (C) 2011 Elsevier B.V. All rights reserved.

Parreira, P., E. Torres, C. Nunes, C. Nunes de Carvalho, G. Lavareda, A. Amaral, and M. J. Brites. "Dye-sensitized 1D anatase TiO2 nanorods for tunable efficient photodetection in the visible range." SENSORS AND ACTUATORS B-CHEMICAL. 161 (2012): 901-907. Abstract

TiO2 films with enhanced photosensitivity were deposited on alkali free glass substrates without intentional substrate heating by pulsed DC magnetron reactive sputtering with an average thickness of about 2 mu m. Three dyes, commercial N719 and two new organic dyes were impregnated in order to control the optical spectral selectivity of such films. The type of dye used proved to dramatically influence the device's response to radiation pulses. The practical breakthrough is the use of different dyes according to the region of the electromagnetic spectrum one wants to detect. Devices with photocurrent 6 orders of magnitude higher than the dark current (from similar to 2 x 10(-12) to 2 x 10(-6) A for a 100 V bias) were fabricated with a spectral response within the visible range of the electromagnetic spectrum. In addition, this approach is likely to allow for the fabrication of hybrid photodetectors on cheap heat sensible flexible polymeric substrates. (C) 2011 Elsevier B.V. All rights reserved.

AFR, Pimenta, Baptista AC, Carvalho T, Brogueira P, Lourenco NMT, Afonso CAM, Barreiros S, Vidinha P, and Borges JP. "Electrospinning of Ion Jelly fibers." MATERIALS LETTERS. 83 (2012): 161-164. Abstract
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Pereira, Pedro, Amin Sallem, Mourad Fakhfakh, Maria H. Fino, and Fernando Coito. "A Technology-Aware Optimization of RF Integrated Inductors." Analog Circuits: Applications, Design and Performance. Ed. Esteban Tlelo-Cuautle. Nova Science Publishers, Inc., 2012. 213-234. Abstract

This Chapter presents the optimal design of radio-frequency integrated spiral inductors. The basic idea is to generate an analytical model to characterize integrated inductors based on the double {\ensuremathπ}-model, and offer to the designer an approach to determine the inductor layout parameters. Particle Swarm Optimization technique is used to generate optimal values of parameters of the developed models. Viability of the proposed models is highlighted via comparison with ASITIC simulation results.

Pereira, Lu\'ıs, Pedro Barquinha, Gonçalo Gonçalves, Elvira Fortunato, and Rodrigo Martins. "{Multicomponent dielectrics for oxide TFT}." Eds. Ferechteh H. Teherani, David C. Look, and David J. Rogers. Vol. 8263. 2012. 826316–16. Abstract
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Martins, R., V. Figueiredo, R. Barros, P. Barquinha, G. Gonçalves, L. Pereira, I. Ferreira, and E. Fortunato. "{P-type oxide-based thin film transistors produced at low temperatures}." Eds. Ferechteh H. Teherani, David C. Look, and David J. Rogers. Vol. 8263. 2012. 826315–15. Abstract
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Timoteo, C. G., M. Guilherme, D. Penas, F. Folgosa, P. Tavares, and AS Pereira. "Desulfovibrio vulgaris bacterioferritin uses H(2)O(2) as a co-substrate for iron oxidation and reveals DPS-like DNA protection and binding activities." The Biochemical journal. 446 (2012): 125-33. AbstractWebsite

A gene encoding Bfr (bacterioferritin) was identified and isolated from the genome of Desulfovibrio vulgaris cells, and overexpressed in Escherichia coli. In vitro, H(2)O(2) oxidizes Fe(2+) ions at much higher reaction rates than O(2). The H(2)O(2) oxidation of two Fe(2+) ions was proven by Mossbauer spectroscopy of rapid freeze-quenched samples. On the basis of the Mossbauer parameters of the intermediate species we propose that D. vulgaris Bfr follows a mineralization mechanism similar to the one reported for vertebrate H-type ferritins subunits, in which a diferrous centre at the ferroxidase site is oxidized to diferric intermediate species, that are subsequently translocated into the inner nanocavity. D. vulgaris recombinant Bfr oxidizes and stores up to 600 iron atoms per protein. This Bfr is able to bind DNA and protect it against hydroxyl radical and DNase deleterious effects. The use of H(2)O(2) as an oxidant, combined with the DNA binding and protection activities, seems to indicate a DPS (DNA-binding protein from starved cells)-like role for D. vulgaris Bfr.

Pinho, Fernando F. S., Válter Lúcio, Luís Moura, Nuno Travassos, and Inês Almeida. "Avaliação das condições de durabilidade de ancoragens metálicas em paredes de alvenaria." CIRea2012 – Conferência Internacional sobre Reabilitação de Estruturas Antigas de Alvenaria. Págs. 81-92. ISBN 978-989-20-3080-7. Reitoria UNL, Lisboa 2012.
Myers, Timothy S., Neil J. Tabor, Louis L. Jacobs, and Octávio Mateus. "Palaeoclimate of the Late Jurassic of Portugal: Comparison with the Western United States." Sedimentology. 59.6 (2012): 1695-1717. Abstractmyers_et_al_2012_palaeoclimate_of_the_late_jurassic_of_portugal_comparison_with_the_western.pdfWebsite

Investigation of the palaeoclimatic conditions associated with Upper Jurassic strata in Portugal and comparison with published palaeoclimate reconstructions of the Upper Jurassic Morrison Formation in western North America provide important insights into the conditions that allowed two of the richest terrestrial faunas of this period to flourish. Geochemical analyses and observations of palaeosol morphology in the informally named Upper Jurassic Lourinhã formation of western Portugal indicate warm and wet palaeoclimatic conditions with strongly seasonal precipitation patterns. Palaeosol profiles are dominated by carbonate accumulations and abundant shrink-swell (vertic) features that are both indicative of seasonal variation in moisture availability. The δ18OSMOW and δDSMOW values of phyllosilicates sampled from palaeosol profiles range from +22·4‰ to +22·7‰ and −53·0‰ to −37·3‰, respectively. These isotope values correspond to temperatures of formation between 32°C and 39°C ± 3°, with an average of 36°C, which suggest surface temperatures between 27°C and 34°C (average 31°C). On average, these surface temperature estimates are 1°C higher than the highest summer temperatures modelled for Late Jurassic Iberia using general circulation models. Elemental analysis of matrix material from palaeosol B-horizons provides proxy (chemical index of alteration minus potassium) estimates of mean annual precipitation ranging from 766 to 1394 mm/year, with an average of approximately 1100 mm/year. Palaeoclimatic conditions during deposition of the Lourinhã formation are broadly similar to those inferred for the Morrison Formation, except somewhat wetter. Seasonal variation in moisture availability does not seem to have negatively impacted the ability of these environments to support rich and relatively abundant faunas. The similar climate between these two Late Jurassic terrestrial ecosystems is probably one of the factors which explains the similarity of their vertebrate faunas.

Temtem, M., T. Barroso, T. Casimiro, J. F. Mano, and A. Aguiar-Ricardo. "Dual stimuli responsive poly(N-isopropylacrylamide) coated chitosan scaffolds for controlled release prepared from a non residue technology." Journal of Supercritical Fluids. 66 (2012): 398-404. AbstractWebsite
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Chastre, Carlos, Válter Lúcio, Arnold Van Acker, Barry Crisp, Daniela Gutstein, Filipe Saraiva, Íria Doniak, Jason Krohn, José Barros Viegas, Marcelo Ferreira, Marco Menegotto, Mounir el Debs, Simon Hughes, Spyros Tsoukantas, and Stefano Pampanin Estruturas Pré-Moldadas no Mundo. Aplicações e Comportamento Estrutural. Brasil: Fundação da Faculdade de Ciência e Tecnologias da Universidade NOVA de Lisboa, 2012. AbstractWebsite

A indústria do betão pré fabricado é, por tradição, inovadora, precursora de novas tecnologias e de novos materiais.O processo produtivo de estruturas com elementos pré-fabricados difere significativamente do das estruturas betonadas em obra pelo facto de uma parte, ou a totalidade, dos elementos da estrutura serem produzidos em fábrica, em condições de produção melhoradas em relação às condições da obra, e serem posteriormente transportados para a obra, onde são, finalmente ligados entre si. A produção em fábrica é efectuada em ambiente protegido do Sol e da chuva, com operários fixos e com formação profissional para desenvolverem tarefas com procedimentos normalizados. Consequentemente, os elementos executados em fábrica possuem melhor qualidade, sob vários aspectos, do que as estruturas executadas em obra.Este livro divide-se em duas grandes áreas, numa primeira abordam-se algumas aplicações de estruturas pré-moldadas no mundo e numa segunda parte descreve-se o seu comportamento estrutural face a diferentes acções. Nos primeiros capítulos relata-se a experiência da pré-fabricação em três países de diferentes continentes: o Brasil, Portugal e a Austrália e revelam-se novas oportunidades que poderão surgir para a indústria da pré-fabricação. Nos capítulos seguintes dá-se um especial enfoque à investigação do comportamento das ligações (rígidas e semi-rígidas). Aborda-se o projecto de estruturas de betão pré-fabricado às acções acidentais. E por fim, dedicam-se os últimos capítulos ao comportamento das estruturas pré-fabricadas face às acções sísmicas. Nesta área, o bom desempenho das estruturas e grande parte do conhecimento e da tecnologia actual advém da resposta dada pelos engenheiros, investigadores e construtores aos fenómenos naturais que afectam as nossas construções, como comprova o desempenho das ligações dúcteis resistentes a momentos em edifícios pré fabricados de betão no verdadeiro teste sísmico que foram os sismos de Christchurch de 2010 e 2011.

Bahubalindruni, Ganga, Candido Duarte, Vitor Grade Tavares, Pedro Barquinha, Rodrigo Martins, Elvira Fortunato, Pedro Guedes de Oliveira, and Ieee. "Multipliers with Transparent a-GIZO TFTs using a Neural Model." 2012 20th Telecommunications Forum (Telfor) (2012): 955-958. AbstractWebsite
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João, Costa, Ortigueira Manuel, Batista Arnaldo, and Paiva Teresa. "An Automatic Sleep Spindle Detector based on WT, STFT and WMSD." Proceedings Of World Academy Of Science, Engineering And Technology (2070-3740). 68 (2012): 2154-2157.
Barroso, Telma, Raquel Viveiros, Márcio Temtem, Teresa Casimiro, Ana M. Botelho do Rego, and Ana Aguiar-Ricardo. "A Combined Strategy to Surface-Graft Stimuli-Responsive Hydrogels Using Plasma Activation and Supercritical Carbon Dioxide." ACS Macro Letters. 1 (2012): 356-360. AbstractWebsite

Differently shaped polymeric matrices were efficiently coated with stimuli-responsive hydrogels for a wide range of applications using a new methodology. By combining plasma surface activation and polymerization in supercritical media at mild conditions, we report the direct smart coating of microcarriers and membranes in gram-scale quantities with a scalable, green, and low-cost approach.

Afonso, J., D. Martins, I. Catarino, R. Patrício, A. Rocaboy, M. Linder, T. Tirolien, and G. Bonfait "Energy storage unit using cryogenic liquids for integration in cryocoolers". ICEC 24. Fukuoka, Japan, 2012.
Myers, TS, NJ Tabor, LL Jacobs, and O. Mateus. "Estimating soil pCO2 using paleosol carbonates: implications for the relationship between primary productivity and faunal richness in ancient terrestrial ecosystems." Paleobiology. 38.4 (2012): 585-604. Abstractmyers_et_al_2012_estimating_soil_paleosols_portugal.pdf

In this paper we present a method for estimating soil pCO2 in ancient environments using the measured carbon-isotope values of pedogenic carbonates and plant-derived organic matter. The validity of soil pCO2 estimates proves to be highly dependent on the organic δ13C values used in the calculations. Organic matter should be sourced from the same paleosol profiles as sampled carbonates to yield the most reliable estimates of soil pCO2. In order to demonstrate the potential use of soil pCO2 estimates in paleoecological and paleoenvironmental studies, we compare samples from three Upper Jurassic localities. Soil pCO2 estimates, interpreted as a qualitative indicator of primary paleoproductivity, are used to rank the Late Jurassic terrestrial environments represented by the Morrison Formation in western North America, the informally named Lourinhã formation in Western Europe, and the Stanleyville Group in Central Africa. Because modern terrestrial environments show a positive correlation between primary productivity and faunal richness, a similar relationship is expected in ancient ecosystems. When the relative paleoproductivity levels inferred for each study area are compared with estimates of dinosaur generic richness, a positive correlation emerges. Both the Morrison and Lourinhã formations have high inferred productivity levels and high estimated faunal richness. In contrast, the Stanleyville Group appears to have had low primary productivity and low faunal richness. Paleoclimatic data available for each study area indicate that both productivity and faunal richness are positively linked to water availability, as observed in modern terrestrial ecosystems.