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2012
Geng, Yong, Pedro L. Almeida, João L. Figueirinhas, Eugene M. Terentjev, and Maria H. Godinho. "Liquid crystal beads constrained on thin cellulosic fibers: electric field induced microrotors and N–I transition." Soft Matter. 8.13 (2012): 3634-3640. Abstract
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Ribeiro, AR, I. Martinho, JB Tillak, I. Bernacka-Wojcik, D. Barata, PAS Jorge, H. Águas, and AG Oliva. "Microfluidic chip for spectroscopic and refractometric analysis." OFS2012 22nd International Conference on Optical Fiber Sensor. International Society for Optics and Photonics, 2012. 84211Y. Abstract
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Pereira, Luis, Pedro Barquinha, Goncalo Goncalves, Elvira Fortunato, and Rodrigo Martins. "Multicomponent dielectrics for oxide TFT." Oxide-Based Materials and Devices Iii. Eds. F. H. Teherani, D. C. Look, and D. J. Rogers. Vol. 8263. Proceedings of SPIE, 8263. 2012. Abstract
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Almeida, Pedro, Yong Geng, Eugene Terentjev, and Maria Helena Godinho Necklaces of Liquid Crystal Beads: Nematic Drops Constrained on Thin Cellulosic Fibers. APS Meeting Abstracts., 2012. Abstract
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Rosa, R., M. S. Pimentel, J. Boavida-Portugal, T. Teixeira, K. Trübenbach, and M. Diniz. "Ocean warming enhances malformations, premature hatching, metabolic suppression and oxidative stress in the early life stages of a keystone squid." PLoS ONE. 7 (2012). AbstractWebsite
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Martins, R., V. Figueiredo, R. Barros, P. Barquinha, G. GONCALVES, L. Pereira, I. Ferreira, and E. Fortunato. "P-type oxide based thin film transistors produced at low temperatures." Oxide-Based Materials and Devices Iii. Eds. F. H. Teherani, D. C. Look, and D. J. Rogers. Vol. 8263. Proceedings of SPIE, 8263. 2012. Abstract
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Myers, TS, NJ Tabor, LL Jacobs, and O. Mateus. "Palaeoclimate of the late jurassic of portugal: Comparison with the western united states." Sedimentology. 59 (2012): 1695-1717. Abstract
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Chastre, Carlos, Válter Lúcio, and Spyros Tsoukantas. "Princípios básicos para a conceção de estruturas de edifícios em zonas sísmicas." Estruturas Pré-moldadas no Mundo - Aplicações e Comportamento Estrutural. Fundação da Faculdade de Ciências e Tecnologia da Universidade NOVA de Lisboa, 2012. 227-248. Abstract
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Machado, J., A. Blanco, P. Fonte, D. Galaviz, L. Lopes, Ferreira R. Marques, and P. Teubig. "Simulations of an innovative ToF detector for high energy neutrons based on iron-less RPCs." Proceedings of the XIth Workshop on Resistive Plate Chambers and Related Detectors (RPC2012). 5-10 February, 2012. Laboratori Nazionali di Frascati dell'INFN-Frascati (Rome)-Italy. Published online at https://pos.sissa.it/159/039/pdf. 2012. Abstract
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Pereira, AS, C. G. Timoteo, M. Guilherme, F. Folgosa, S. G. Naik, A. G. Duarte, BH HUYNH, and P. Tavares. "Spectroscopic Evidence for and Characterization of a Trinuclear Ferroxidase Center in Bacterial Ferritin from Desulfovibrio vulgaris Hildenborough." Journal of the American Chemical Society. 134 (2012): 10822-10832. AbstractWebsite

Ferritins are ubiquitous and can be found in practically all organisms that utilize Fe. They are composed of 24 subunits forming a hollow sphere with an inner cavity of similar to 80 angstrom in diameter. The main function of ferritin is to oxidize the cytotoxic Fe2+ ions and store the oxidized Fe in the inner cavity. It has been established that the initial step of rapid oxidation of Fe2+ (ferroxidation) by H-type ferritins, found in vertebrates, occurs at a diiron binding center, termed the ferroxidase center. In bacterial ferritins, however, X-ray crystallographic evidence and amino acid sequence analysis revealed a trinuclear Fe binding center comprising a binuclear Fe binding center (sites A and B), homologous to the ferroxidase center of H-type ferritin, and an adjacent mononuclear Fe binding site (site C). In an effort to obtain further evidence supporting the presence of a trinuclear Fe binding center in bacterial ferritins and to gain information on the states of the iron bound to the trinuclear center, bacterial ferritin from Desulfovibrio vulgaris (DvFtn) and its E130A variant was loaded with substoichiometric amounts of Fe2+, and the products were characterized by Mossbauer and EPR spectroscopy. Four distinct Fe species were identified: a paramagnetic diferrous species, a diamagnetic diferrous species, a mixed valence Fe2+Fe3+ species, and a mononuclear Fe2+ species. The latter three species were detected in the wild-type DvFtn, while the paramagnetic diferrous species was detected in the E130A variant. These observations can be rationally explained by the presence of a trinuclear Fe binding center, and the four Fe species can be properly assigned to the three Fe binding sites. Further, our spectroscopic data suggest that (1) the fully occupied trinuclear center supports an all ferrous state, (2) sites B and C are bridged by a mu-OH group forming a diiron subcenter within the trinuclear center, and (3) this subcenter can afford both a mixed valence Fe2+Fe3+ state and a diferrous state. Mechanistic insights provided by these new findings are discussed and a minimal mechanistic scheme involving O-O bond cleavage is proposed.

Chumakov, Yu, JR Santos, I. Ferreira, K. Termentzidis, A. Pokropivny, SY Xiong, P. Cortona, and S. Volz. "Thermoelectric transport in V2O5 thin films." Journal of Physics: Conference Series. 395.1 (2012): 012016. Abstract
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Trindade, Ana Catarina, João Paulo Canejo, and Maria Helena Godinho Tunning the Elastic Properties of Wrinkled Janus Particles. Vol. 1483. MRS Proceedings, 1483. Cambridge University Press, 2012. Abstract
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Gawande, Manoj B., Alexandre Velhinho, Isabel D. Nogueira, C. A. A. Ghumman, O. M. N. D. Teodoro, and Paula S. Branco. "{A facile synthesis of cysteine – ferrite magnetic nanoparticles for application in multicomponent reactions — a sustainable protocol}." RSC Advances. 2 (2012): 6144-6149. Abstract

A facile, simple and environmentally friendly Fe3O4–cysteine MNP was synthesized without any additive or additional source of linkers. Fe3O4–cysteine MNPs were successfully used for the synthesis of b-amino carbonyl and hydroquinoline compounds, which were obtained in excellent yields via multicomponent reactions. Magnetic organocatalysts can be easily recovered by simple magnetic decantation and their catalytic activity remains unaltered after 9 consecutive cycles, making them environmen- tally friendly and widely applicable due to their efficiency, ease of handling, and cost effectiveness.

Gawande, Manoj B., Anuj Rathi, Isabel D. Nogueira, C. a. a. Ghumman, N. Bundaleski, O. M. N. D. Teodoro, and Paula S. Branco. "{A Recyclable Ferrite-Co Magnetic Nanocatalyst for the Oxidation of Alcohols to Carbonyl Compounds}." ChemPlusChem. 77 (2012): 865-871. AbstractWebsite

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Ghumman, C. A. A., A. M. C. Moutinho, A. Santos, O. M. N. D. Teodoro, and A. Tolstogouzov. "{An upgraded TOF-SIMS VG Ionex IX23LS : Study on the negative secondary ion emission of III – V compound semiconductors with prior neutral cesium deposition}." Applied Surface Science. 258 (2012): 2490-2497. Abstract

A TOF-SIMS VG Ionex IX23LS with upgraded data acquisition and control system was used to study the secondary emission of negative atomic and cluster ions of non-metallic elements (P, As and Sb) upon a 19 keV Ga+ bombardment of non-degenerated III–V semiconductors (GaP, GaAs, GaSb, InP, InAs and InSb) with prior neutral Cs deposition from a getter dispenser. It was found that surface cesiation enhances the peak intensity of all negative ion species; in the case of atomic ions, the greatest increase (360) was observed for P− emitted from InP. Such an enhancement was larger for In-based than for Ga-based compounds. We explained that in terms of an electronegativity difference between the composing atoms of III–V semiconductors. The greater electronegativity difference (bond ionicity) of In-based compounds resulted in the greater Cs-induced work function decrease leading to a higher increase in the ionization probability of secondary ions.

Neto, M. a, E. L. Silva, C. a Ghumman, O. M. Teodoro, A. J. S. Fernandes, F. J. Oliveira, and R. F. Silva. "{Composition profiles and adhesion evaluation of conductive diamond coatings on dielectric ceramics}." Thin Solid Films. 520 (2012): 5260-5266. AbstractWebsite

Sintered silicon nitride (Si3N4) ceramic substrates were investigated as dielectric substrates for the growth of metal-like boron-doped nanocrystalline diamond (NCD) and microcrystalline diamond coatings via the Hot Filament Chemical Vapor Deposition (HFCVD) technique. The structural, electrical and chemical properties of both the ceramic substrates and the diamond coatings may potentiate their applicability in particular in harsh environments and highly demanding situations. Boron doping was achieved via a boron oxide solution in ethanol dragged into the reaction chamber with argon. The coatings were characterized by scanning elec- tron microscopy, UV $μ$-Raman scattering, X-ray diffraction, time-of-flight secondary ion mass spectroscopy, Brale indentation for adhesion evaluation and two-point contact probe for resistivity measurements. The HFCVD technique led to a maximal growth rate of about 1 $μ$m/h. Several metal-like boron doped diamond coatings were obtained. It was found that at lower substrate temperature, lower system pressure and higher methane concentration, the resistivity of the conducting NCD coatings is about 3 orders of magnitude higher when compared with samples obtained with higher substrate temperature, higher system pressure and lower methane concentration. Nevertheless, for every metal-like boron-doped coating the use of the Si3N4 ceramic substrate guaranteed a superior adhesion level. ©

Silva, Ana G., Nenad Bundaleski, Augusto M. C. Moutinho, and Orlando M. N. D. Teodoro. "{Dynamics of water adsorption on TiO 2 monitored by work function spectroscopy}." Applied Surface Science. 2 (2012): 2006-2009. Abstract

Water adsorption dynamics on two TiO2 (1 1 0) rutile surfaces at room temperature has been investigated using the work function (WF) change as a function of time. The first surface was prepared in a standard way using sputtering/annealing cycles, whereas the second one was long term annealed at 620 K in moderate vacuum conditions (the residual gas pressure of about 1 × 10−7 mbar) and cleaned afterwards. The WF change show striking difference as compared to those obtained for highly reduced TiO2 (1 1 0) rutile or the (2 × 1) reconstructed surfaces. For the first kind of surface we show that the observed adsorption dynamics can be qualitatively explained by the present understanding of the water adsorption on non- reconstructed TiO2 (1 1 0) rutile surface according to which the bridging oxygen vacancies and Ti rows are the main adsorption sites. Although generally similar to the former results, water adsorption dynamics on the second kind of the surface has an additional feature that can be only explained by a new adsorption site, which we suggest to be due to (2 × 1) reconstructed regions coexisting with the non-reconstructed TiO2 (110)surface.

Santos, Adérito, Nenad Bundaleski, Bobbie-jean Shaw, Ana G. Silva, and Orlando M. N. D. Teodoro. "{Increase of secondary electron yield of amorphous carbon coatings under high vacuum conditions}." Vaccum (2012): 1-4. AbstractWebsite

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Gawande, Manoj B., Anuj K. Rathi, Paula S. Branco, Isabel D. Nogueira, Alexandre Velhinho, Janhavi J. Shrikhande, Utkarsha U. Indulkar, Radha V. Jayaram, Amjad C. A. Ghumman, Nenad Bundaleski, and Orlando M. N. D. Teodoro. "{Regio- and Chemoselective Reduction of Nitroarenes and Carbonyl Compounds over Recyclable Magnetic Ferrite À Nickel Nanoparticles ( Fe 3 O 4 À Ni ) by Using Glycerol as a Hydrogen Source}." Chemistry European Journal (2012): 12628-12632. Abstract

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Alberti, M., R. Ayouchi, S. R. Bhattacharyya, N. Bundaleski, A. Moutinho, O. Teodoro, L. Aguilera, M. Taborelli, and R. Schwarz. "{Secondary electron emission yield (SEY) in amorphous and graphitic carbon films prepared by PLD}." Physica Status Solidi C. 3 (2012): 1-3. Abstract

High secondary emission yield (SEY), and the subse- quent build-up of a secondary electron cloud, may se- verely limit the stability of high-intensity particle beams inside particle accelerators. One of the best candidates of beam pipe coating for reduced SEY has been amorphous carbon (a-C) produced by direct current (D.C.) magne- tron sputtering. Here we used pulsed laser deposition (PLD), to prepare a-C films from a pure carbon target at substrate temperatures ranging from 300 K to 773 K. The ablating laser was a Nd:YAG system operating at 1064 nm wavelength. With increasing temperature the optical band gap dropped from about 2.1 eV to 1.0 eV. This trend indicates transition from predominantly a-C films to films with more graphitic content, which was also con- firmed by Raman measurements. SEY spectra were taken upto 1732 eV of primary electron energy. The maximum SEY value decreased from 1.9 in a-C films down to 1.4 in highly graphitic films deposited at higher temperatures

Tutak, W., T. Farooque, and G. C. Simon. "{Tissue Engineering and Regenerative Medicine}." Journal of Tissue Engineering and Regenerative Medicine. 6 (2012): 1-429. AbstractWebsite
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Turner, N. J., B. M. Sicari, T. J. Keane, R. Londono, P. M. Crapo, S. Tottey, R. Matsushima, Y. Shimatsu, K. Nam, T. Kimura, and T. Fujisato. "{Tissue Engineering and Regenerative Medicine}." Journal of Tissue Engineering and Regenerative Medicine. 6 (2012): 1-429. AbstractWebsite
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Ghumman, C. A. A., A. M. C. Moutinho, A. Santos, A. Tolstogouzov, and O. M. N. D. Teodoro. "{TOF-SIMS study of cystine and cholesterol stones}." Journal of Mass Spectrometry. 47 (2012): 547-551. Abstract

Two different human stones, cystine and cholesterol from the kidney and gall bladder, were examined by time-of-flight sec- ondary ion mass spectrometry using Ga+ primary ions as bombarding particles. The mass spectra of kidney stone were com- pared with those measured for the standard compounds, cystine and cysteine. Similar spectra were obtained for the stone and cystine. The most important identification was based on the existence of the protonated molecules [M+H]+ and deprotonated molecules [M-H]-. The presence of cystine salt was also revealed in the stone through the sodiated cystine [M+Na]+ and the associated fragments, which might be due to the patient treatment history. In the gallstone, the deprotonated molecules [M-H]+ of cholesterol along with relatively intense characteristic fragments [M-OH]+ were detected. Copyright © 2012 John Wiley & Sons, Ltd.

Ghumman, C. A. A., A. M. C. Moutinho, A. Santos, O. M. N. D. Teodoro, and A. Tolstogouzov. "{TOF-SIMS VG Ionex IX23LS : upgrade and application for the urinary stones analysis}." Applied Surface Science (2012). Abstract

TOF-SIMS VG Ionex IX23LS with upgraded data acquisition and control system was used to study the real urinary stones along with calcium oxalate (COX) and four different calcium phosphate (CP) references. Reliable phase identification of CPs was achieved in the positive SIMS mode on basis of the PO+/POH+ and CaPO2+/Ca2O+ peak ratios. In real urinary stones, pure COX was distinguished from calcium phosphates with confidence via the presence of its characteristic ion peaks. We also quantified the calcium phosphate in the human calculi containing calcium oxalate as major or minor component, which is of a great interest for medical community

2011
Folgosa, F., C. M. Cordas, J. A. Santos, AS Pereira, JJG Moura, P. Tavares, and I. Moura. "New spectroscopic and electrochemical insights on a class I superoxide reductase: evidence for an intramolecular electron-transfer pathway." Biochemical Journal. 438 (2011): 485-494. AbstractWebsite

SORs (superoxide reductases) are enzymes involved in bacterial resistance to reactive oxygen species, catalysing the reduction of superoxide anions to hydrogen peroxide. So far three structural classes have been identified. Class I enzymes have two ironcentre-containing domains. Most studies have focused on the catalytic iron site (centre II), yet the role of centre I is poorly understood. The possible roles of this iron site were approached by an integrated study using both classical and fast kinetic measurements, as well as direct electrochemistry. A new heterometallic form of the protein with a zinc-substituted centre I, maintaining the iron active-site centre II, was obtained, resulting in a stable derivative useful for comparison with the native all-iron from. Second-order rate constants for the electron transfer between reduced rubredoxin and the different SOR forms were determined to be 2.8 x 10(7) M(-1) . s(-1) and 1.3 x 10(6) M(-1) . s(-1) for SOR(Fe(IIII)-Fe(II)) and for SOR(Fe(IIII)-Fe(III)) forms respectively, and 3.2 x 10(6) M(-1) s(-1) for the SOR(Zn(II)-Fe(III)) form. The results obtained seem to indicate that centre I transfers electrons from the putative physiological donor rubredoxin to the catalytic active iron site (intramolecular process). In addition, electrochemical results show that conformational changes are associated with the redox state of centre I, which may enable a faster catalytic response towards superoxide anion. The apparent rate constants calculated for the SOR-mediated electron transfer also support this observation.

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