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2011
Pinheiro, Carla, Carla Antonio, Maria Fernanda Ortuno, Petre I. Dobrev, Wolfram Hartung, Jane Thomas-Oates, Candido Pinto Ricardo, Radomira Vankova, Manuela M. Chaves, and Julie C. Wilson. "Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses." Journal of Experimental Botany. 62 (2011): 4965-4974. AbstractWebsite

The early (2-4 d) effects of slowly imposed soil water deficit on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance in different organs (leaf blade, stem stele, stem cortex, and root) were evaluated on 23-d-old plants (growth chamber assay). Our work shows that several metabolic adjustments occurred prior to alteration of the plant water status, implying that water deficit is perceived before the change in plant water status. The slow, progressive decline in soil water content started to be visible 3 d after withholding water (3 DAW). The earliest plant changes were associated with organ-specific metabolic responses (particularly in the leaves) and with leaf conductance and only later with plant water status and photosynthetic rate (4 DAW) or photosynthetic capacity (according to the Farquhar model; 6 DAW). Principal component analysis (PCA) of the physiological parameters, the carbohydrate and the hormone levels and their relative values, as well as leaf water-soluble metabolites full scan data (LC-MS/MS), showed separation of the different sampling dates. At 6 DAW classically described stress responses are observed, with plant water status, ABA level, and root hormonal balance contributing to the separation of these samples. Discrimination of earlier stress stages (3 and 4 DAW) is only achieved when the relative levels of indole-3-acetic acid (IAA), cytokinins (Cks), and carbon metabolism (glucose, sucrose, raffinose, and starch levels) are taken into account. Our working hypothesis is that, in addition to single responses (e.g. ABA increase), the combined alterations in hormone and carbohydrate levels play an important role in the stress response mechanism. Response to more advanced stress appears to be associated with a combination of cumulative changes, occurring in several plant organs. The carbohydrate and hormonal balance in the leaf (IAA to bioactive-Cks; soluble sugars to IAA and starch to IAA; relative abundances of the different soluble sugars) flag the initial responses to the slight decrease in soil water availability (10-15% decrease). Further alterations in sucrose to ABA and in raffinose to ABA relative values (in all organs) indicate that soil water availability continues to decrease. Such alterations when associated with changes in the root hormone balance indicate that the stress response is initiated. It is concluded that metabolic balance (e.g. IAA/bioactive Cks, carbohydrates/IAA, sucrose/ABA, raffinose/ABA, ABA/IAA) is relevant in triggering adjustment mechanisms.

Pinheiro, Carla, Carla Antonio, Maria Fernanda Ortuno, Petre I. Dobrev, Wolfram Hartung, Jane Thomas-Oates, Candido Pinto Ricardo, Radomira Vankova, Manuela M. Chaves, and Julie C. Wilson. "Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses." Journal of Experimental Botany. 62 (2011): 4965-4974. AbstractWebsite
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Mollegaard, Karen Mai, Karen Duus, Sofie Dietz Traeholt, Morten Thaysen-Andersen, Yan Liu, Angelina S. Palma, Ten Feizi, Paul R. Hansen, Peter Hojrup, and Gunnar Houen. "The interactions of calreticulin with immunoglobulin G and immunoglobulin Y." Biochimica Et Biophysica Acta-Proteins and Proteomics. 1814 (2011): 889-899. Abstract
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Timoteo, C. G., AS Pereira, C. E. Martins, S. G. Naik, A. G. Duarte, JJG Moura, P. Tavares, BH HUYNH, and I. Moura. "Low-Spin Heme b(3) in the Catalytic Center of Nitric Oxide Reductase from Pseudomonas nautica." Biochemistry. 50 (2011): 4251-4262. AbstractWebsite

Respiratory nitric oxide reductase (NOR) was purified from membrane extract of Pseudomonas (Ps.) nautica cells to homogeneity as judged by polyacrylamide gel electrophoresis. The purified protein is a heterodimer with subunits of molecular masses of 54 and 18 kDa. The gene encoding both subunits was cloned and sequenced. The amino acid sequence shows strong homology with enzymes of the cNOR class. Iron/heme determinations show that one heme c is present in the small subunit (NORC) and that approximately two heme b and one non-heme iron are associated with the large subunit (NORB), in agreement with the available data for enzymes of the cNOR class. Mossbauer characterization of the as-purified, ascorbate-reduced, and dithionite-reduced enzyme confirms the presence of three heme groups (the catalytic heme b(3) and the electron transfer heme b and heme c) and one redox-active non-heme Fe (Fe-B). Consistent with results obtained for other cNORs, heme c and heme b in Ps. nautica cNOR were found to be low-spin while FeB was found to be high-spin. Unexpectedly, as opposed to the presumed high-spin state for heme b(3), the Mossbauer data demonstrate unambiguously that heme b(3) is, in fact, low-spin in both ferric and ferrous states, suggesting that heme b(3) is six-coordinated regardless of its oxidation state. EPR spectroscopic measurements of the as-purified enzyme show resonances at the g similar to 6 and g similar to 2-3 regions very similar to those reported previously for other cNORs. The signals at g = 3.60, 2.99, 2.26, and 1.43 are attributed to the two charge-transfer low-spin ferric heme c and heme b. Previously, resonances at the g similar to 6 region were assigned to a small quantity of uncoupled high-spin Fe-III heme b(3). This assignment is now questionable because heme b(3) is low-spin. On the basis of our spectroscopic data, we argue that the g = 6.34 signal is likely arising from a spin spin coupled binuclear center comprising the low-spin Fe-III heme b(3) and the high-spin Fe-B(III). Activity assays performed under various reducing conditions indicate that heme b(3) has to be reduced for the enzyme to be active. But, from an energetic point of view, the formation of a ferrous heme-NO as an initial reaction intermediate for NO reduction is disfavored because heme [FeNO](7) is a stable product. We suspect that the presence of a sixth ligand in the Fe-II-heme b(3) may weaken its affinity for NO and thus promotes, in the first catalytic step, binding of NO at the Fe-B(II) site. The function of heme b(3) would then be to orient the Fe-B-bound NO molecules for the formation of the N-N bond and to provide reducing equivalents for NO reduction.

Folgosa, F., C. M. Cordas, J. A. Santos, AS Pereira, JJG Moura, P. Tavares, and I. Moura. "New spectroscopic and electrochemical insights on a class I superoxide reductase: evidence for an intramolecular electron-transfer pathway." Biochemical Journal. 438 (2011): 485-494. AbstractWebsite

SORs (superoxide reductases) are enzymes involved in bacterial resistance to reactive oxygen species, catalysing the reduction of superoxide anions to hydrogen peroxide. So far three structural classes have been identified. Class I enzymes have two ironcentre-containing domains. Most studies have focused on the catalytic iron site (centre II), yet the role of centre I is poorly understood. The possible roles of this iron site were approached by an integrated study using both classical and fast kinetic measurements, as well as direct electrochemistry. A new heterometallic form of the protein with a zinc-substituted centre I, maintaining the iron active-site centre II, was obtained, resulting in a stable derivative useful for comparison with the native all-iron from. Second-order rate constants for the electron transfer between reduced rubredoxin and the different SOR forms were determined to be 2.8 x 10(7) M(-1) . s(-1) and 1.3 x 10(6) M(-1) . s(-1) for SOR(Fe(IIII)-Fe(II)) and for SOR(Fe(IIII)-Fe(III)) forms respectively, and 3.2 x 10(6) M(-1) s(-1) for the SOR(Zn(II)-Fe(III)) form. The results obtained seem to indicate that centre I transfers electrons from the putative physiological donor rubredoxin to the catalytic active iron site (intramolecular process). In addition, electrochemical results show that conformational changes are associated with the redox state of centre I, which may enable a faster catalytic response towards superoxide anion. The apparent rate constants calculated for the SOR-mediated electron transfer also support this observation.

Capodicasa, Cristina, Paola Chiani, Carla Bromuro, Flavia De Bernardis, Marcello Catellani, Angelina S. Palma, Yan Liu, Ten Feizi, Antonio Cassone, Eugenio Benvenuto, and Antonella Torosantucci. "Plant production of anti-beta-glucan antibodies for immunotherapy of fungal infections in humans." Plant Biotechnology Journal. 9 (2011): 776-787. Abstract
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Lai, Livia, Janene Bumstead, Yan Liu, James Garnett, Maria A. Campanero-Rhodes, Damer P. Blake, Angelina S. Palma, Wengang Chai, David J. P. Ferguson, Peter Simpson, Ten Feizi, Fiona M. Tomley, and Stephen Matthews. "The Role of Sialyl Glycan Recognition in Host Tissue Tropism of the Avian Parasite Eimeria tenella." Plos Pathogens. 7 (2011). Abstract
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Tillak, JB, I. Bernacka-Wojcik, D. Barata, PAS Jorge, H. Águas, and AG Oliva. "Towards single cell spectroscopy and refractometry in microfluidic chip platforms." International Conference on Applications of Optics and Photonics. International Society for Optics and Photonics, 2011. 800112. Abstract
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Todorov, G., T. Todorov, I. Ivanov, S. Valtchev, and B. Klaassens. "Tuning techniques for kinetic MEMS energy harvesters." INTELEC, International Telecommunications Energy Conference (Proceedings) (2011). Abstract
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ER, Neagu, Dias CJ, Lança MC, Igreja R, Inacio P, and Marat-Mendes J. N. "The use of the final thermally stimulated discharge current technique to study the molecular movements around glass transition." 354.2 (2011). Abstract

During electric polarization charge is injected into the material. The structure is decorated with space charge and during the subsequent heating an apparent peak and the genuine peaks that are related to dipole randomization and charge detrapping are observed. The method is used here to analyze the molecular movements in polyimide in the temperature range from 293 to 623K. Two weak relaxations have been observed around 337K and around 402K. The electrical conductivity changes with temperature in agreement with the Arrhenius law only below (W=(0.84±0.03) eV ) and above ( W=(0.82±0.03) eV) the temperature range where the β relaxation is observed. The variation of the electrical conductivity with temperature, in the range of the β relaxation, is controlled by the variation of the charge currier mobility with temperature and it shows a non-Arrhenius behavior. We suggest that the β1 sub-glass relaxation is related to the rotation or oscillation of phenyl groups and the β2 sub-glass relaxation is related to the rotation or oscillation of the imidic ring. At higher temperatures an apparent peak was observed. The relaxation time of the trapped charge, at 573K, is high than 8895s.

Trindade, AC, João P. Canejo, LFV Pinto, P. Patrício, P. Brogueira, Paulo Ivo Cortez Teixeira, and M. H. Godinho. "Wrinkling labyrinth patterns on elastomeric janus particles." Macromolecules. 44.7 (2011): 2220-2228. Abstract
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Mendes, Manuel J., Ignacio Tobías, Antonio Martí, and Antonio Luque. "{Light concentration in the near-field of dielectric spheroidal particles with mesoscopic sizes}." Optics Express. 19 (2011): 16207-16222. AbstractWebsite
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Timoteo, Cristina G., Alice S. Pereira, Carlos E. Martins, Sunil G. Naik, Americo G. Duarte, Jose J. G. Moura, Pedro Tavares, Boi Hanh Huynh, and Isabel Moura. "{Low-Spin Heme b(3) in the Catalytic Center of Nitric Oxide Reductase from Pseudomonas nautica}." Biochemistry. 50 (2011): 4251-4262. Abstract
Respiratory nitric oxide reductase (NOR) was purified from membrane extract of Pseudomonas (Ps.) nautica cells to homogeneity as judged by polyacrylamide gel electrophoresis. The purified protein is a heterodimer with subunits of molecular masses of 54 and 18 kDa. The gene encoding both subunits was cloned and sequenced. The amino acid sequence shows strong homology with enzymes of the cNOR class. Iron/heme determinations show that one heme c is present in the small subunit (NORC) and that approximately two heme b and one non-heme iron are associated with the large subunit (NORB), in agreement with the available data for enzymes of the cNOR class. Mossbauer characterization of the as-purified, ascorbate-reduced, and dithionite-reduced enzyme confirms the presence of three heme groups (the catalytic heme b(3) and the electron transfer heme b and heme c) and one redox-active non-heme Fe (Fe-B). Consistent with results obtained for other cNORs, heme c and heme b in Ps. nautica cNOR were found to be low-spin while FeB was found to be high-spin. Unexpectedly, as opposed to the presumed high-spin state for heme b(3), the Mossbauer data demonstrate unambiguously that heme b(3) is, in fact, low-spin in both ferric and ferrous states, suggesting that heme b(3) is six-coordinated regardless of its oxidation state. EPR spectroscopic measurements of the as-purified enzyme show resonances at the g similar to 6 and g similar to 2-3 regions very similar to those reported previously for other cNORs. The signals at g = 3.60, 2.99, 2.26, and 1.43 are attributed to the two charge-transfer low-spin ferric heme c and heme b. Previously, resonances at the g similar to 6 region were assigned to a small quantity of uncoupled high-spin Fe-III heme b(3). This assignment is now questionable because heme b(3) is low-spin. On the basis of our spectroscopic data, we argue that the g = 6.34 signal is likely arising from a spin spin coupled binuclear center comprising the low-spin Fe-III heme b(3) and the high-spin Fe-B(III). Activity assays performed under various reducing conditions indicate that heme b(3) has to be reduced for the enzyme to be active. But, from an energetic point of view, the formation of a ferrous heme-NO as an initial reaction intermediate for NO reduction is disfavored because heme [FeNO](7) is a stable product. We suspect that the presence of a sixth ligand in the Fe-II-heme b(3) may weaken its affinity for NO and thus promotes, in the first catalytic step, binding of NO at the Fe-B(II) site. The function of heme b(3) would then be to orient the Fe-B-bound NO molecules for the formation of the N-N bond and to provide reducing equivalents for NO reduction.
Mendes, MJ, I. Tobías, A. Martí, and A. Luque. "{Near-field light focusing by wavelenght-sized dielectric spheroids for photovoltaic applications}." Optical Nanostructures and Advanced Materials for Photovoltaics - Concepts of Light Trapping and Photon Transport. Ed. Technical O. S. A. Digest. Vol. Renewable. Austin, Texas (USA): Optical Society of America, 2011. JThC. Abstract
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Bundaleski, N., B. J. Shaw, G. a Silva, M. C. a Moutinho, and O. M. N. D. Teodoro. "{Novel approach to the semi-empirical universal theory for secondary electron yield.}." Scanning. 33 (2011): 266-9. AbstractWebsite

The universal semi-empirical equation has been commonly used to quantitatively describe the energy dependence of the secondary electron yield (SEY). It is even used as a first reliability test for experimental data. The equation is based on the assumption that the stopping power is constant along the electron trajectory. In this article, we derive a novel analytical expression based on a more advanced model which considers linear stopping power dependence on penetration depth. Although coinciding with the universal equation at low energies, the novel function has lower intensity in the higher energy range. The models were compared with experimental SEY data of different metals, taken from literature, as well as freshly cleaved highly oriented pyrolytic graphite, measured in the frame of this work. It is confirmed that the novel expression better describes the experimental data.

Trueba, Alondra Torres, Laura J. Rovetto, Louw J. Florusse, Maaike C. Kroon, and Cor J. Peters. "{Phase equilibrium measurements of structure II clathrate hydrates of hydrogen with various promoters}." Fluid Phase Equilibria. 307 (2011): 6-10. Abstract

Phase equilibrium measurements of single and mixed organic clathrate hydrates with hydrogen were determined within a pressure range of 2.0-14.0. MPa. The organic compounds studied were furan, 2,5-dihydrofuran, tetrahydropyran, 1,3-dioxolane and cyclopentane. These organic compounds are known to form structure II clathrate hydrates with water. It was found that the addition of hydrogen to form a mixed clathrate hydrate increases the stability compared to the single organic clathrate hydrates. Moreover, the mixed clathrate hydrate also has a much higher stability compared to a pure hydrogen structure II clathrate hydrate. Therefore, the organic compounds act as promoter materials. The stabilities of the single and mixed organic clathrate hydrates with hydrogen showed the following trend in increasing order: 1,3-dioxolane {\textless} 2,5-dihydrofuran {\textless} tetrahydropyran {\textless} furan {\textless} cyclopentane, indicating that both size and geometry of the organic compound determine the stability of the clathrate hydrates. © 2011 Elsevier B.V.

Gawande, Manoj B., Paula S. Branco, Kalpesh Parghi, Janhavi J. Shrikhande, Rajesh Kumar Pandey, C. a. a. Ghumman, N. Bundaleski, O. M. N. D. Teodoro, and Radha V. Jayaram. "{Synthesis and characterization of versatile MgO–ZrO2 mixed metal oxide nanoparticles and their applications}." Catalysis Science & Technology. 1 (2011): 1653. AbstractWebsite

A heterogeneous, versatile nano-magnesia-zirconia or MgO–ZrO2 (MZ) catalyst was prepared by an ultra dilution method. The as-synthesised catalyst was characterized by several analytical techniques such as XRD, particle size analysis, BET surface area, thermogravimetric analysis (TGA), differential thermal analysis (DTA), FT-IR spectroscopy, SEM (scanning electron microscope), TEM (transmission electron microscope) and XPS (X-ray fluorescence spectroscopy). The surface area is found to be 268 m2 g1. The catalytic activity of MZ was tested for various important organic reactions such as cross-aldol condensation, N-benzyloxycarbonylation of amines, reduction of aromatic nitrocompounds, and synthesis of 1,5-benzodiazepines. It has been observed that for all reactions MZ shows a good catalytic activity. All corresponding products were obtained in good to excellent yield under mild conditions. The MgO-ZrO2 catalyst can be prepared from inexpensive precursors, has high surface area, and is reusable and recyclable for all reactions. Introduction In heterogeneous catalysis, mixed metal oxides (MMOs) play a

Ghumman, C. A. A., A. M. C. Moutinho, A. Tolstogouzov, and O. M. N. D. Teodoro. "{Time-of-flight secondary ionmass spectrometric identification of calciumformateCa(HCO2)2 andmetabolite of vitamin B6 in human stones}." Rapid communications in mass spectrometry. 25 (2011): 997-999. Abstract

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Mellor, A., I. Tobías, A. Martí, MJ Mendes, and A. Luque. "{Upper limits to absorption enhancement in thick solar cells using diffraction gratings}." Progress in Photovoltaics: Research and Applications. 19 (2011): 676-687. AbstractWebsite

The application of diffraction gratings to solar cells is a promising approach to superseding the light trapping limits of conventional Lambertian structures. In this paper a mathematical formalism is derived for calculating the absorption that can be expected in a solar cell equipped with a diffraction grating, which can be applied to any lattice geometry and grating profile. Furthermore, the formalism is used to calculate the upper limit of total absorption that can theoretically be achieved using a diffraction grating. The derived formalism and limits are valid when the solar cell thickness is greater than the coherence length of the illuminating solar spectrum. Comparison is made to the upper limit achievable using an angularly selective Rugate filter, which is also calculated. Both limits are found to be considerably higher than the Lambertian limit within the range of sunlight concentration factors practically employed in photovoltaic systems (1–1000×). The upper limit of absorption using the diffraction grating is shown to be equal to the thermodynamic limit for all absorbances and concentration factors. The limit for the Rugate filter is generally lower, but tends to the thermodynamic limit for lower cell absorbances. Copyright © 2011 John Wiley {&} Sons, Ltd.

2010
Silveira, Celia M., Sofia P. Gomes, Alberto N. Araujo, Conceicao M. B. S. M. Montenegro, Smilja Todorovic, Ana S. Viana, Rui JC Silva, Jose J. G. Moura, and Gabriela M. Almeida. "An efficient non-mediated amperometric biosensor for nitrite determination." Biosensors & Bioelectronics. 25.9 (2010): 2026-2032. Abstract
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Valtchev, Stanimir, and Jorge Pamies Teixeira. "The Charging of Hybrid and Electrical Vehicles? Batteries: Contactless Energy Transfer as the key to the future." 2010 International Symposium on Electric Vehicle and 2-nd Annual Conference of Polish Society for Environment Friendly Vehicles. 2010. Abstract
Would it be necessary to charge rapidly the electric vehicle (EV) and hybrid electric vehicle (HEV)? It is not easy to answer without a thorough look at the capability of the modern propulsion battery and the power necessities of the EV and HEV. The different possible solutions are compared and maximum speed of charging is analysed. The wired connection for charging is compared to the wireless energy transfer and because of the limitations imposed by the modern and future batteries, the contactless energy transfer is chosen as the future charging method.
Teixeira, Jorge Pamies, and Stanimir Valtchev. "An Insight to Potential Actions Facing Future Needs of Electric and Hybrid Electric Vehicles." 2010 International Symposium on Electric Vehicle and 2-nd Annual Conference of Polish Society for Environment Friendly Vehicles. 2010. Abstract
Recent issues of global heating and energy shortages are imposing a need to change our paradigm around transportation. Somehow, electric vehicles are progressively standing as a strong and necessary alternative for the society. Technically and technologically the acceptance of the EV is easier now than ever but the psychology of the consumers and the running business of internal combustion vehicles, the whole existing infrastructure are too much conservative to be changed easily. The changes in technology require changes in the engineering society and its human resources. The objective of this paper is to give a contribution to the discussion and reflection of potential future scenarios where EV?HEV?s are spread across the society. It gives an overview of the range of knowledge and competences necessary for a sustainable and streamlined development of those. In fact, it is expected that a new kind of professional profiles need to be created or developed to supply the work market with the right human resources. The paper provides some discussion on the creation of new profiles or adaption of existing ones. Among different possible scenarios the creation of post-graduation courses for students holding undergraduate profiles in the fields referred to earlier would be an interesting and viable solution for fast response. The post graduation would be focused in specific key areas of the EV?HEV. Several factors are pointed out to endorse this scenario
Tiago, Cadavez, Ferreira Sónia, Medeiros Pedro, Quaresma Paulo, Rocha Luís, Velhinho Alexandre, and Vignoles Gérard. "A Graphical Tool for the Tomographic Characterization of Microstructural Features on Metal Matrix Composites." Int. J. of Tomography. & Statistics. 14 (2010): 3-15. Abstract

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R, Jardim-Goncalves, Grilo A, Hassan T, and Steiger-Garcao A. "Semiotics-based manufacturing systems integration in the advent of a single electronic market." INTERNATIONAL JOURNAL OF COMPUTER INTEGRATED MANUFACTURING. 23 (2010): 832-851. Abstract
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Martins, R., L. Pereira, P. Barquinha, N. Correia, G. Gonçalves, I. Ferreira, C. Dias, and E. Fortunato. "{Floating gate memory paper transistor}." Eds. Ferechteh H. Teherani, David C. Look, Cole W. Litton, and David J. Rogers. Vol. 7603. 2010. 760314–11. Abstract
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