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2024
Caseiro, Catarina, Nicholas G. S. McGregor, Victor Diogo Alves, Ana Luísa Carvalho, Maria João Romão, Gideon J. Davies, Carlos M. G. A. Fontes, and Pedro Bule. "Family GH157 enzyme exhibits broad linkage tolerance and a dual endo/exo- β -glucanase activity on β-glucans." (2024): 137402. AbstractWebsite

The structural and chemical diversity of β-glucans is reflected on the variety of essential biological roles tackled by these polysaccharides. This natural heterogeneity requires an elaborate assortment of enzymatic mechanisms to assemble, degrade or modify, as well as to extract their full biotechnological potential. Recent metagenomic efforts have provided an unprecedented growth in potential new biocatalysts, most of which remain unconfirmed or uncharacterized. Here we report the first biochemical and structural characterization of two bacterial β-glucanases from the recently created glycoside hydrolase family 157 (LaGH157 and BcGH157) and investigate their molecular basis for substrate hydrolysis. Structural analysis by X-ray crystallography revealed that GH157 enzymes belong to clan GH-A, possessing a (β/α)8-barrel fold catalytic domain, two β-sandwich accessory domains and two conserved catalytic glutamates residues, with relative positions compatible with a retaining mechanism of hydrolysis. Specificity screening and enzyme kinetics suggest that the enzymes prefer mixed-linkage glucans over β-1,3-glucans. Activity screening showed that both enzymes exhibit pH optimum at 6.5 and temperature optimum for LaGH157 and BcGH157 at 25 °C and 48 °C, respectively. Product analysis with HPAEC-PAD and LC-MS revealed that both enzymes are endo-1,3(4)-β-glucanases, capable of cleaving β-1,3 and β-1,4-linked glucoses, when preceded by a β-1,3 linkage. Moreover, BcGH157 needs a minimum of 4 subsites occupied for hydrolysis to occur, while LaGH157 only requires 3 subsites. Additionally, LaGH157 possesses exohydrolytic activity on β-1,3 and branching β-1,6 linkages. This unusual bifunctional endo-1,3(4)/exo-1,3–1,6 activity constitutes an expansion on our understanding of β-glucan deconstruction, with the potential to inspire future applications.

Coelho, T., and H. Rocha Forging interdisciplinary paths: Teachers' professional knowledge on disciplinary articulation - Trilhando caminhos interdisciplinares: Conhecimento profissional dos professores sobre a articulação disciplinar. SIEM 2024. Caldas da Rainha: APM, 2024. Abstract2024_siem_coelho_rocha.pdf

The challenges of disciplinary integration in teaching practice, especially in the implementation of tasks that promote interdisciplinary approaches, highlight the importance of teachers' professional knowledge in this process. Using a naturalistic approach, this study aims to characterize the professional knowledge of a physics teacher when adopting an interdisciplinary approach using technology. The results of the research revealed that the teacher mobilizes different types of knowledge, showing a differentiated knowledge of the most appropriate mathematical application to teach a given piece of content, and knowledge of how pedagogical strategies can be aided through different applications using technology.

Rotatori, Filippo Maria, Mattia Quaranta, Filippo Bertozzo, Tom Hübner, Bruno Camilo, Octávio Mateus, and Miguel Moreno-Azanza. "Hadrosaur-like vascularisation in the dentary of an early diverging iguanodontian dinosaur." Historical Biology. 36.10 (2024): 1979-1984. AbstractWebsite

ABSTRACTVirtual palaeontology is a growing field, leading palaeontologists to better understand the microanatomy of many extinct species. The application of techniques such as CT and μCT-scanning allows the researchers to study micro-anatomical features in a non-invasive way and make inferences on the palaeobiology of animals. Dinosaurs have been extensively studied using these techniques, with particular focus on the microanatomy of the cranium, whereas relatively little is known of other cranial elements, such as the lower jaw. Here, we aim to fill this gap, describing the microanatomy of the specimen ML 768, an isolated dentary belonging to a dryosaurid iguanodontian dinosaur from the Upper Jurassic of Lourinhã Fm. The dentary ML 768 was subjected to μCT-scanning, and subsequently the data were segmented in Avizo and rendered in Blender. We identified functional and replacement teeth, recognising remnants of old replacement cycles. Furthermore, we mapped a rich neurovascular network present in the dentary and compared it with reference literature. We found that the high vascularisation is shared with other cerapodan dinosaurs with high tooth replacement rates, although homoeostasis may have also played a role in the development of this condition. Further evidence is needed to appreciate the macroevolutionary significance of these findings.

Giglione, S., E. Faggiano, and H. Rocha Investigating the impact of technology integration on Italian and Portuguese teachers’ perspectives concerning standardized assessment. MEDA – Mathematics Education at the Digital Age. Bari, Italy: ERME, 2024.
Botelho, M. C., and H. Rocha. "O conhecimento profissional do professor na mobilização de diferentes representações com diferentes tecnologias." Iberian Journal of Information Systems and Technologies. E71 (2024): 486-499.Website
Karlovych, Oleksiy, and Eugene Shargorodsky. "On dilations of Fourier multipliers on weighted Lebesgue spaces." Analysis Without Borders. Operator Theory: Advances and Applications, vol 297. Ed. Sergei Rogosin. Cham: Birkhäuser, 2024. 109-122.
Karlovych, Oleksiy, and Márcio Valente. "On the algebras of Wiener-Hopf operators with continuous symbols acting on some Banach function spaces." Analysis Without Borders. Operator Theory: Advances and Applications, vol 297. Ed. Sergei Rogosin. 2024. 123-144.
Sacristán, A., E. Faggiano, M. Santacruz-Rodríguez, and H. Rocha. "Policies and implementations for technology use in mathematics education: perspectives from around the world." Handbook of digital resources in mathematics education. Springer, 2024. 1-35. Abstract

In this chapter, we examine the role of policies and other factors affecting digital technology (DT) integration in mathematics education. In particular, we develop a cross-national analysis of the impact on DT implementation in four countries: two countries in Europe (Italy and Portugal) and two countries in Latin America (Colombia and Mexico). We analyze the role that policies, political changes, reforms, curricula, educational organization and systems, sociocultural aspects, and teachers’ training, knowledge, and beliefs play toward possible DT implementations. We observe that there is a discourse in policies to promote digital technologies’ use, but in practice the availability and integration of such resources in mathematics classrooms is still scarce. We also note that the efforts done during the pandemic did not change this, promoting general ICT use, rather than DT resources that might enhance mathematics teaching and learning.

Rocha, H., F. Viseu, and S. Matos. "Problem solving in a real-life context: an approach during the learning of inequalities." European Journal of Science and Mathematics Education. 12.1 (2024). AbstractWebsite

This study was conducted while 9th grade students learn to solve inequalities and seeks to understand their approach to solving problems with a real-life context. Specifically, the aim is to understand: (1) What are the main characteristics of the students’ approaches to the proposed problems? (2) What is the impact of the real context on the students’ resolutions? A qualitative and interpretative methodology is adopted, based on case studies, with data collected through documentary collection and audio recording of discussions between a pair of students while solving problems. The main conclusions suggest a trend to approach problems without establishing immediate connections with what was being done in the classroom, with students’ decisions being essentially guided by criteria of simplicity. The real context of the problems seems to have the potential to develop in students a more integrated mathematics, focused on understanding and not so much on the repetition of mechanical and meaning-independent procedures. The students’ familiarization with the context in question is one of the aspects highlighted by this study.

Rocha, H., and A. Babo. "Problem-solving and mathematical competence: a look to the relation during the study of Linear Programming." Thinking Skills and Creativity. 51 (2024): 1-14. AbstractWebsite

This study seeks reflection on the approaches of 11th grade students to Linear Programming problems, discussing the approaches taken at different moments of the teaching process. It aims to analyze:
How is the students’ mathematical competence characterized in relation to problemsolving;
What differences can be identified in the resolutions at different moments of the teaching and learning process.
We adopt a qualitative and interpretative methodology, analyzing the approaches of two pairs of students with different mathematical backgrounds. The analysis is guided by P´olya’s stages of solving a problem and aspects of the understanding of mathematical competence. The results show different approaches to the problems depending on the teaching moment and different competences. The mathematical background impacts the students’ success when they implement routine procedures, however it does not seem to determine the students’ competence to reason about a problem.

Botelho, M. C., and H. Rocha The role of teachers’ knowledge and the use of different technologies in the classroom. MEDA – Mathematics Education at the Digital Age. Bari, Italy: ERME, 2024. Abstract2024_meda_botelho_rocha.pdf

The potential of technology to enhance the learning of mathematics is widely acknowledged. However, realizing this potential requires teachers to possess the knowledge to effectively integrate it into their teaching practices. This study aims to characterize the mathematics teacher's knowledge when using different technologies in teaching and learning. It also aims to study the existence of relationships between the specific domains of the Knowledge for Teaching Mathematics with Technology – KTMT and the integration of graphing calculator and Excel. The methodology adopted is qualitative with an interpretative approach, using a case study of Mathematics teacher in the 11th grade (16-17 years old) with extensive experience in the use of technology. This study shows that different KTMT knowledge is mobilized, according to the technology chosen and the specific characteristics of each of the technologies used influenced the teacher's pedagogical choices.

Rocha, H. Teaching Mathematics with technology: a preliminary version of the Global Knowledge model - Ensinar Matemática com tecnologia: uma versão preliminar do modelo Global do Conhecimento. SIEM 2024. Caldas da Rainha: APM, 2024. Abstractsiem2024_hr.pdf

This study aims to discuss similarities and differences between knowledge models focusing on technology, developing the Global Model. This is not a new model, but rather a contribution to the articulation between different conceptual frameworks.

Este estudo visa discutir semelhanças e diferenças entre modelos de conhecimento com foco na tecnologia, desenvolvendo a partir destes o Modelo Global. Este não é um novo modelo, mas antes um contributo para a articulação entre diferentes quadros conceptuais.

Rotatori, Filippo Maria, Lucrezia Ferrari, Cristina Sequero, Bruno Camilo, Octávio Mateus, and Miguel Moreno-Azanza. "An unexpected early-diverging iguanodontian dinosaur (Ornithischia, Ornithopoda) from the Upper Jurassic of Portugal." Journal of Vertebrate Paleontology (2024): e2310066. AbstractWebsite

Iguanodontia is a diverse clade of herbivorous ornithischian dinosaurs that were speciose and abundant during the Jurassic and Cretaceous. Although the monophyly of Iguanodontia is well supported, their internal relationships have sparked heated debate due to several phylogenetic paradigm shifts. Late Jurassic basally branching iguanodontians in particular are not well understood in terms of their systematic affinities and evolutionary relevance. Their fossil record in Europe is meager compared with North America, with only a few species currently recognized. Two taxa are currently known from the Upper Jurassic of England, the basally branching styracosternan Cumnoria prestwichii and the putative dryosaurid Callovosaurus leedsi. In the Upper Jurassic of Portugal, the styracosternan Draconyx loureiroi and the dryosaurid Eousdryosaurus nanohallucis are presently the only described basally branching iguanodontians. Here we report a new species of early diverging iguanodontian from the Upper Jurassic Lourinhã Formation of western-central Portugal. The new species is clearly distinguished from all other coeval taxa by an exclusive combination of characters that include a tibia with a cnemial crest that is directed craniolaterally and a fibular condyle that is angled at 90° with respect to the proximal epiphysis, a fibula with symmetrical proximal margins, and a reduced metatarsal I. The phylogenetic relationships of the Lourinhã iguanodontian were explored using maximum parsimony and Bayesian inference. The two analyses recover the Lourinhã iguanodontian as an indeterminate dryomorphan, with more precise affinities precluded due to the current available material. Body size is estimated between 3 and 4 meters for the holotype specimen, adding to the diversity of small ornithopods already recognized in the paleoichnological record of the Lourinhã Formation. http://zoobank.org/urn:lsid:zoobank.org:pub:5F4D52D0-0F0B-4809-8561-BE58C7C97D45

Rocha, H. The use of the TPACK framework on research about teachers’ knowledge to teach with digital technology. MEDA – Mathematics Education at the Digital Age. Bari, Italy: ERME, 2024. Abstract2024_meda_rocha.pdf

The potential of digital technologies for teaching and learning mathematics is widely recognized and teachers’ knowledge is one of the elements impacting their integration. Several authors have intended to characterize the teachers’ knowledge required and developed several models, being TPACK one of these models. In this study, we seek to conduct a systematic review of the research on the integration of digital technologies by mathematics teachers based on the TPACK model. Specifically, we intend to answer the following research questions: (1) What are the main methodological options adopted? (2) How is the framework operationalized/used in the studies? The review was based on a search in the Scopus database and resulted in the identification of 10 relevant documents. The analysis suggests a prevalence of qualitative approaches, but a strong use of questionnaires; and an integration of the model with other frameworks, namely the developmental model of TPACK.

Jacobs, Louis L., Stefan Schröder, Nair de Sousa, Richard Dixon, Edoardo Fiordalisi, Arthur Marechal, Octávio Mateus, Pedro Claude Nsungani, Michael J. Polcyn, Gustavo Couto Ramos do Pereira, Nathan Rochelle-Bates, Anne S. Schulp, Christopher R. Scotese, Ian Sharp, Carlos Gaudari Silvano, Roger Swart, and Diana P. Vineyard. "The Atlantic jigsaw puzzle and the geoheritage of Angola." Geological Society, London, Special Publications. 543 (2024): SP543-2022-301. AbstractWebsite

The jigsaw-puzzle fit of South America and Africa is an icon of plate tectonics and continental drift. Fieldwork in Angola since 2002 allows the correlation of onshore outcrops and offshore geophysical and well-core data in the context of rift, sag, salt, and post-salt drift phases of the opening of the central South Atlantic. These outcrops, ranging in age from >130 Ma to <71 Ma, record Early Cretaceous outpouring of the Etendeka-Paraná Large Igneous Province (Bero Volcanic Complex) and rifting, followed by continental carbonate and siliciclastic deposition (Tumbalunda Formation) during the sagging of the nascent central South Atlantic basin. By the Aptian, evaporation of sea water resulted in thick salt deposits (Bambata Formation), terminated by sea floor spreading. The Equatorial Atlantic Gateway began opening by the early Late Cretaceous (100 Ma) and allowed flow of currents between the North and South Atlantic, creating environmental conditions that heralded the introduction of marine reptiles. These dramatic outcrops are a unique element of geoheritage because they arguably comprise the most complete terrestrially exposed geological record of the puzzle-like icon of continental drift.

Coutinho, Mathilda L., João Pedro Veiga, Andreia Ruivo, Teresa Pereira da Silva, Silvia Bottura-Scardina, Maria Margarida R. A. Lima, Carlos Pereira, Ana Carvalho Dias, Luis Dias, Peter Vandenabeele, and José C. Roseiro. "Characterization of Tableware from Fábrica de Loiça de Sacavém—Linking Analytical and Documental Research." Minerals. 14 (2024). AbstractWebsite

Fábrica de Loiça de Sacavém (ca. 1858–1994) was among the first to produce white earthenware in Portugal, becoming one of the country’s leading ceramic manufacturers during the late 19th to early 20th centuries. Research on white earthenware has accompanied the growing interest in post-industrial archaeology but is still poorly explored compared to more ancient ceramic productions. This study focused on the ceramic body, glazes, and colourants of tableware produced by Fábrica de Loiça de Sacavém during the first 50 years of its activity (1859–1910). A multi-analytical approach was selected to investigate the chemical and mineralogical composition of the ceramic body, glaze, and pigments using optical microscopy, variable-pressure scanning electron microscope energy-dispersive X-ray spectroscopy (VP-SEM-EDS), μ-Raman spectroscopy, μ-X-ray Diffraction (μ-XRD), and reflectance spectroscopy (hyperspectral image analysis). The studied tableware was produced with a Ca-poor siliceous–aluminous white earthenware ceramic body covered with transparent alkali lead or lead borosilicate glaze, and most colourants were complex Cr-based pigments. These results are in agreement with the little documental evidence from this period found in the manufacturer’s archives.

Ramos, António, Carla Marchão, João Nuno Pacheco, Alejandro Enfedaque, Dario Coronelli, Duarte Faria, Jorge de Brito, Miguel Fernández Ruiz, and Rui Marreiros. "A review of punching behavior of slab–column connections with recycled coarse aggregate concrete." Structural Concrete (2024). AbstractWebsite
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S. Fernandes, I., D. Antunes, R. Martins, MJ Mendes, and A. S. Reis-Machado. "Solar fuels design: Porous cathodes modeling for electrochemical carbon dioxide reduction in aqueous electrolytes." Heliyon. 10 (2024). AbstractWebsite
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Akalin, S. A., T. Mateus, G. Ribeiro, J. Deuermeier, T. Calmeiro, H. Águas, R. Martins, A. T. Vicente, MJ Mendes, and U. D. Yilmazer Menda. "Ultra-flexible, high-performing NAN transparent electrodes for bendable optoelectronic applications." Journal of Materials Science: Materials in Electronics. 35 (2024). AbstractWebsite
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2023
Coelho, Beatriz J., Joana V. Pinto, Jorge Martins, Ana Rovisco, Pedro Barquinha, Elvira Fortunato, Pedro V. Baptista, Rodrigo Martins, and Rui Igreja. "{Parylene C as a Multipurpose Material for Electronics and Microfluidics}." Polymers. 15 (2023): 2277. AbstractWebsite

Poly(p-xylylene) derivatives, widely known as Parylenes, have been considerably adopted by the scientific community for several applications, ranging from simple passive coatings to active device components. Here, we explore the thermal, structural, and electrical properties of Parylene C, and further present a variety of electronic devices featuring this polymer: transistors, capacitors, and digital microfluidic (DMF) devices. We evaluate transistors produced with Parylene C as a dielectric, substrate, and encapsulation layer, either semitransparent or fully transparent. Such transistors exhibit steep transfer curves and subthreshold slopes of 0.26 V/dec, negligible gate leak currents, and fair mobilities. Furthermore, we characterize MIM (metal–insulator–metal) structures with Parylene C as a dielectric and demonstrate the functionality of the polymer deposited in single and double layers under temperature and AC signal stimuli, mimicking the DMF stimuli. Applying temperature generally leads to a decrease in the capacitance of the dielectric layer, whereas applying an AC signal leads to an increase in said capacitance for double-layered Parylene C only. By applying the two stimuli, the capacitance seems to suffer from a balanced influence of both the separated stimuli. Lastly, we demonstrate that DMF devices with double-layered Parylene C allow for faster droplet motion and enable long nucleic acid amplification reactions.

Cerdeira, Jorge Orestes, Maria João Martins, and Marcos Raydan. "The max-out min-in problem: A tool for data analysis." Computers {&}amp$\mathsemicolon$ Operations Research. 154 (2023): 106218. AbstractWebsite
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Silva, José Malanho, Linda Cerofolini, Ana Luísa Carvalho, Enrico Ravera, Marco Fragai, Giacomo Parigi, Anjos L. Macedo, Carlos F. G. C. Geraldes, and Claudio Luchinat. "Elucidating the concentration-dependent effects of thiocyanate binding to carbonic anhydrase." 244 (2023): 112222. AbstractWebsite

Many proteins naturally carry metal centers, with a large share of them being in the active sites of several enzymes. Paramagnetic effects are a powerful source of structural information and, therefore, if the native metal is paramagnetic, or it can be functionally substituted with a paramagnetic one, paramagnetic effects can be used to study the metal sites, as well as the overall structure of the protein. One notable example is cobalt(II) substitution for zinc(II) in carbonic anhydrase. In this manuscript we investigate the effects of sodium thiocyanate on the chemical environment of the metal ion of the human carbonic anhydrase II. The electron paramagnetic resonance (EPR) titration of the cobalt(II) protein with thiocyanate shows that the EPR spectrum changes from A-type to C-type on passing from 1:1 to 1:1000-fold ligand excess. This indicates the occurrence of a change in the electronic structure, which may reflect a sizable change in the metal coordination environment in turn caused by a modification of the frozen solvent glass. However, paramagnetic nuclear magnetic resonance (NMR) data indicate that the metal coordination cage remains unperturbed even in 1:1000-fold ligand excess. This result proves that the C-type EPR spectrum observed at large ligand concentration should be ascribed to the low temperature at which EPR measurements are performed, which impacts on the structure of the protein when it is destabilized by a high concentration of a chaotropic agent.

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