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Submitted
Freitas, F., J. Pais, V. D. Alves, M. Carvalheira, N. Costa, R. Oliveira, and M. A. M. Reis. "{Conversion of Glycerol-rich Product (GRP) into Biopolymers}." {CLEAN TECHNOLOGY 2008: BIO ENERGY, RENEWABLES, GREEN BUILDING, SMART GRID, STORAGE, AND WATER}. Eds. M. {Laudon, B. Romanowicz, and DL} Laird. {Clean Technol & Sustainable Ind Org; Greenberg Traurig LLP; Jackson Walker LLP; IDA Ireland; Opportunity Houston; Alston & Bird LLP; K & L Gates; Buchanan Ingersoll & Rooney PC; Foley & Larder, LLP; Pacific Crest Securities; RockPort Capital Partners; Fi, Submitted. {552-553}. Abstract
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Neustetter, Michael, Julia Aysina, Filipe Ferreira da Silva, and Stephan Denifl. "{DEA to bare and water-solvated pyrimidine clusters}." {XXIX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2015), PTS 1-12}. Eds. C. {Diaz, I. Rabadan, G. Garcia, L. Mendez, and F. } Martin. Vol. {635}. {Journal of Physics Conference Series}, {635}. Submitted. Abstract
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Lopes Dias, Joao Miguel, Paulo Lemos, Luisa Serafim, Adrian Oehmen, Maria A. M. Reis, and Rui Oliveira. "{Development and implementation of a non-parametric/metabolic model in the process optimisation of PHA production by mixed microbial cultures}." {17TH EUROPEAN SYMPOSIUM ON COMPUTER AIDED PROCESS ENGINEERING}. Eds. V. {Plesu, and PS} Agachi. Vol. {24}. {Computer-Aided Chemical Engineering}, {24}. {Univ Bucharest; Univ Cluj Napoca}, Submitted. {995-1000}. Abstract
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Lange, E., G. Meneses, T. Cunha, J. Krasuska, J. Kopyra, G. Garcia, F. Ferreira da Silva, and P. Limao-Vieira. "{Electron induced fragmentation of sulphur containing biological prototypes: thiaproline and taurine}." {XXIX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2015), PTS 1-12}. Eds. C. {Diaz, I. Rabadan, G. Garcia, L. Mendez, and F. } Martin. Vol. {635}. {Journal of Physics Conference Series}, {635}. Submitted. Abstract
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Regeta, Khrystyna, Tiago Cunha, Filipe Ferreira da Silva, Gustavo Garcia, and Paulo Limao-Vieira. "{Electron-transfer studies in potassium collisions with tetrachloromethane}." {XXX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2017)}. Eds. A. {Bray, S. Hodgman, J. Machacek, and A. } Kheifets. Vol. {875}. {Journal of Physics Conference Series}, {875}. Submitted. Abstract
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Peres, J., F. Freitas, M. A. M. Reis, S. Feyo de Azevedo, and R. Oliveira. "{Hybrid modular mechanistic/ANN modelling of a wastewater phosphorus removal process}." {16TH EUROPEAN SYMPOSIUM ON COMPUTER AIDED PROCESS ENGINEERING AND 9TH INTERNATIONAL SYMPOSIUM ON PROCESS SYSTEMS ENGINEERING}. Eds. W. {Marquardt, and C. } Pantelides. Vol. {21}. {Computer-Aided Chemical Engineering}, {21}. Submitted. {1717-1722}. Abstract
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Khreis, J., J. Ameixa, M. Neustetter, J. Reitshammer, F. Ferreira da Silva, and S. Denifl. "{Low-energy electron interactions with chromium hexacarbonyl Cr(CO)(6)}." {XXX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2017)}. Eds. A. {Bray, S. Hodgman, J. Machacek, and A. } Kheifets. Vol. {875}. {Journal of Physics Conference Series}, {875}. Submitted. Abstract
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Blanco, F., A. Munoz, D. Almeida, F. Ferreira da Silva, P. Limao-Vieira, A. Verkhovtsev, L. Ellis-Gibbings, K. Krupa, A. Traore, and G. Garcia. "{Modeling secondary particle tracks generated by high-energy protons in water}." {XXIX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2015), PTS 1-12}. Eds. C. {Diaz, I. Rabadan, G. Garcia, L. Mendez, and F. } Martin. Vol. {635}. {Journal of Physics Conference Series}, {635}. Submitted. Abstract
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Galinha, C. F., G. Carvalho, C. A. M. Portugal, G. Guglielmi, R. Oliveira, J. G. Crespo, and M. A. M. Reis. "{Real-time monitoring of membrane bioreactors with 2D-fluorescence data and statistically based models}." {WATER SCIENCE AND TECHNOLOGY}. {63} (Submitted): {1381-1388}. Abstract
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Ferreira da Silva, F., J. Rafael, A. Rebelo, D. Almeida, and P. Limao-Vieira. "{The role of side chains in electron transfer induced fragmentation of amino-acids}." {XXVIII INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC AND ATOMIC COLLISIONS (ICPEAC)}. Vol. {488}. {Journal of Physics Conference Series}, {488}. Submitted. Abstract
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In Press
Capone, R., E. Faggiano, H. Rocha, and M. Bernardi Exploring pre-service Mathematics teachers' perceptions of generative AI in Mathematics Education: A pilot study. ICMET – International Conference on Math Education and Technology., In Press.
Ramos, T. R. P., M. I. Gomes, and A. P. Barbosa-Povoa. "Multi-depot vehicle routing problem: a comparative study of alternative formulations." International Journal of Logistics Research and Applications (In Press).
Dias, S., A. Gama, P. Abrantes, M. I. Gomes, M. Fonseca, V. Reigado, D. Simões, E. Carreiras, C. Mora, A. Pinto Ferreira, O. Akpogheneta, and MO Martins. "Patterns of Sexual Risk Behavior, HIV Infection, and Use of Health Services Among Sub-Saharan African Migrants in Portugal." The Journal of Sex Research 19 (In Press).Website
Botelho, M. C., and H. Rocha Representational fluency of the mathematics teacher and the integration of different technologies. ICMET – International Conference on Math Education and Technology., In Press.
Teixeira, P., H. Rocha, and C. Martins. "Teachers' perceptions of teaching practices, the STEAM approach, and collaborative work." Springer, In Press.
2025
Duarte, Marlene, Ana Luísa Carvalho, Magda C. Ferreira, Beatriz Caires, Maria João Romão, José A. M. Prates, Shabir Najmudin, Edward A. Bayer, Carlos MGA. Fontes, and Pedro Bule. "Tripartite binding mode of cohesin-dockerin complexes from Ruminococcus flavefaciens involving naturally truncated dockerins." 301.7 (2025): 110325. AbstractWebsite

Polysaccharides in plant cell walls serve as a rich carbon and energy source, yet their structural complexity presents a barrier to efficient degradation. To address this, anaerobic microorganisms like R. flavefaciens have developed sophisticated multi-enzyme complexes known as cellulosomes, which enable the efficient breakdown of these recalcitrant polysaccharides. These complexes are assembled through high-affinity interactions between cohesin (Coh) modules in scaffoldin proteins and dockerin (Doc) modules in cellulosomal enzymes. R. flavefaciens FD-1 harbors one of the most intricate cellulosomes described to date, comprising over 200 Doc-containing proteins encoded in its genome. Despite substantial research on this cellulosome, the role of a group of truncated but functional dockerins, known as group-2 Docs, remains unclear. In this study, we present a detailed structural and binding analysis of a Coh-Doc complex involving the cohesin from the cell-anchoring scaffoldin ScaE and a group-2 Doc that bears only one of the two Ca+2-coordinating loops that characterise the canonical Docs. Our findings reveal a novel tripartite binding mechanism, in which the cohesin can simultaneously bind two distinct dockerin units in three alternative conformations. This discovery provides new insights into the modular versatility of the R. flavefaciens cellulosome and sheds light on the mechanisms that enhance its efficiency in polysaccharide degradation.

Teixeira, P., H. Rocha, and C. Martins. "Challenges and potential in implementing STE(A)M in teachers' practices: a systematic review." International Journal of Mathematical Education in Science and Technology (2025).Website
Rotatori, Filippo Maria, Fernando Escaso, Bruno Camilo, Filippo Bertozzo, Elisabete Malafaia, Octávio Mateus, Pedro Mocho, Francisco Ortega, and Miguel Moreno-Azanza and. "Evidence of large-sized ankylopollexian dinosaurs (Ornithischia: Iguanodontia) in the Upper Jurassic of Portugal." Journal of Systematic Palaeontology. 23 (2025): 2470789. Abstractevidence_of_large-sized_ankylopollexian_dinosaurs__ornithischia__iguanodontia__in_the_upper_jurassic_of_portugal.pdfWebsite

The Upper Jurassic beds of the Lusitanian Basin in central Portugal yield diverse dinosaurian fauna, dated to the Kimmeridgian–Tithonian interval. Saurischian dinosaurs are, overall, more abundant than their ornithischian counterparts, in terms of both specimens collected and species recognized. Iguanodontians are so far represented by the styracosternan Draconyx loureiroi, the dryosaurid Eousdryosaurus nanohallucis and the enigmatic dryomorphan Hesperonyx martinhotomasorum. Here we aim to highlight the diversity of this clade in the Late Jurassic of Portugal, presenting evidence for yet another species of ankylopollexian iguanodontian dinosaur, represented by the specimen SHN.JJS.015, which is housed at the Sociedade de História Natural, Torres Vedras. Detailed comparisons rule out attribution to previously known taxa, and phylogenetic analyses that include SHN.JJS.015 indicate early-diverging ankylopollexian affinities for this specimen. As there is no robust diagnosis, we do not erect a new formal species for it at this stage. Nevertheless, this specimen represents a previously unreported taxon that highlights greater diversity than previously estimated among the iguanodontians of the Late Jurassic and highlights the importance of Europe in diversification and dispersal events of this clade. A series of smaller, isolated femora from the same sub-basin as SHN.JJS.015 may represent the same taxon, presenting evidence of thriving communities of ankylopollexians during the Kimmeridgian–Tithonian interval in Portugal.

Karlovych, Oleksiy. "Fredholmness of pseudodifferential operators on rearrangement-invariant spaces." Pseudo-Differential Operators and Related Topics, Extended Abstracts PSORT 2024. Eds. Vishvesh Kumar, David Rottensteiner, and Michael Ruzhansky. Cham: Birkhäuser, 2025. 39-46.
Bernardi, M. L., R. Capone, E. Faggiano, and H. Rocha. "Generative AI in mathematics education: pre-service teachers’ knowledge and implications for their professional development." International Journal of Mathematical Education in Science and Technology (2025).Website
Rocha, H. "Knowledge to teach Mathematics with technology: the Global Model." International Journal of Mathematical Education in Science and Technology (2025). AbstractWebsite

The teacher’s central role in technology integration and the challenges of that integration emphasise the need for a deeper understanding about the teacher’s knowledge required to teach with technology. Based on previous work and a systematic literature review, we identified three knowledge models often used: TPACK, KTMT and
PTK. The goal of this paper is to discuss the similarities and differences between these knowledge models and present a Global Model. This Global Model is not a new model. On the contrary, it is a model developed based on the existing models and intending to integrate in a single model the knowledge domains considered in the different existing models. The Global Model highlights the common domains considered and the common roots for the three models, but it also makes explicit the differences, mostly related to the understanding of the domains or even to the domains considered, and also to the way how the knowledge’s development is conceived.

Ríos, RM, M. Gamboa-Marrufo, C. Cismasiu, and JA Moreno-Herrera. "Pressure coefficient distributions on Hyperbolic Paraboloid membranes by Numerical Fluid-Structure Interaction." Latin American Journal of Solids and Structures. 25 (2025).