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2010
SCUTARU, G., F. SANDU, E. COCORADA, M. PAVALACHE, D. KRISTALY, L. Gomes, F. Coito, A. K. MÖRSKY-LINDQUIST, S. CSEREY, M. DASCĂLU, and others RELAZIONE SUGLI ASPETTI FORMATIVI. IDENTITY; 229930-CP-1-2006-1-RO-MINERVA-M, 2010. Abstract

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Paulino, Hervé, João André Martins, João M. Lourenço, and Nuno Duro. "SmART: An Application Reconfiguration Framework." Complex Systems Design & Management. Eds. Marc Aiguier, Francis Bretaudeau, and Daniel Krob. Springer Berlin Heidelberg, 2010. 73-84. Abstractcsdm.pdf

SmART (Smart Application Reconfiguration Tool) is a framework for the automatic configuration of systems and applications. The tool implements an application configuration workflow that resorts to the similarities between configuration files (i.e., patterns such as parameters, comments and blocks) to allow a syntax independent manipulation and transformation of system and application configuration files.Without compromising its generality, SmART targets virtualized IT infrastructures, configuring virtual appliances and its applications. SmART reduces the time required to (re)configure a set of applications by automating time-consuming steps of the process, independently of the nature of the application to be configured. Industrial experimentation and utilization of SmART show that the framework is able to correctly transform a large amount of configuration files into a generic syntax and back to their original syntax. They also show that the elapsed time in that process is adequate to what would be expected of an interactive tool. SmART is currently being integrated into the VIRTU bundle, whose trial version is available for download from the projects web page.

Dias, Ricardo J., João Seco, and João M. Lourenço. "Snapshot Isolation Anomalies Detection in Software Transactional Memory." Proceedings of INForum Simpósio de Informática (InForum 2010). Braga, Portugal: Universidade do Minho, 2010. AbstractINForum-dias-2010.pdf

Some performance issues of transactional memory are caused by unnecessary abort situations where non serializable and yet non conflicting transactions are scheduled to execute concurrently. Smartly relaxing the isolation properties of transactions may overcome these issues and attain considerable performance improvements. However, it is known that relaxing isolation restrictions may lead to runtime anomalies. In some situations, like database management systems, developers may choose that compromise, hence avoiding anomalies explicitly. Memory transactions protect the state of the program, therefore execution anomalies may have more severe consequences in the semantics of programs. So, the compromise between a relaxed isolation strategy and enforcing the necessary program correctness is harder to setup. The solution we devise is to statically analyse programs to detect the kind of anomalies that emerge under snapshot isolation. Our approach allows a compiler to either warn the developer about the possible snapshot isolation anomalies in a given program, or possibly inform automatic correctness strategies to ensure Serializability.

Oliveira, F., J. P. Dias, and M. FIgueira. "Well-posedness and existence of bound states for coupled Schrödinger-gKdV system." Journal of Nonlinear Analysis. 73 (2010): 2686-2698.Website
Henriques, J., P. Gil, Alberto Cardoso, P. Carvalho, and António Dourado. "Adaptive Neural Output Regulation Control of a Solar Power Plant." Control Engineering Practice. 18 (2010): 1183-1196. Abstract
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Liu, Yan, Robert A. Childs, Tatyana Matrosovich, Stephen Wharton, Angelina S. Palma, Wengang Chai, Rodney Daniels, Victoria Gregory, Jennifer Uhlendorff, Makoto Kiso, Hans-Dieter Klenk, Alan Hay, Ten Feizi, and Mikhail Matrosovich. "Altered Receptor Specificity and Cell Tropism of D222G Hemagglutinin Mutants Isolated from Fatal Cases of Pandemic A(H1N1) 2009 Influenza Virus." Journal of Virology. 84 (2010): 12069-12074. Abstract
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Neagu, E. R., R. M. Neagu, C. J. Dias, M. C. Lanca, and J. N. Marat-Mendes. "The analysis of isothermal current in terms of charge injection or extraction at the metal-dielectric contact." Journal of Non-Crystalline Solids. 356 (2010): 833-837. AbstractWebsite

The measured isothermal charging and discharging currents are analyzed either in terms of polarization mechanisms or in terms of charge injection/extraction at the metal-dielectric interface and the conduction current through the dielectric material. We propose to measure the open-circuit isothermal charging and discharging currents just to overpass the difficulties related to the analysis of the conduction mechanisms through the dielectric materials. Besides a polarization current, there is a current related with charge injection or extraction at the metal-dielectric contact and a reverse current related to the charge trapped into the superficial trap states of the dielectric and that can jump at the interface in a reverse way. By fitting the experimental data, two important parameters can be determined (i) the highest value of the relaxation time for the polarization mechanisms still involved into the transient current and (ii) the height W-0 of the potential barrier at the metal-dielectric interface immediately after the step voltage is applied. Only the initial part of the measured isothermal charging or discharging current can be used to obtain information about the polarization processes. By transforming the time-domain data into the frequency domain, a maximum for the imaginary part of the dielectric permittivity is obtained, in good agreement with the data obtained from AC dielectric measurements and the finally thermally stimulated discharge current measurements. (C) 2009 Elsevier B.V. All rights reserved.

Neagu, E. R., R. M. Neagu, C. J. Dias, M. C. Lanca, and J. N. Marat-Mendes. "The analysis of isothermal current in terms of charge injection or extraction at the metal-dielectric contact." Journal of Non-Crystalline Solids. 356 (2010): 833-837. AbstractWebsite
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Ribeiro, A. S. M. a, R. C. C. b Monteiro, E. J. R. a Davim, and M. H. V. a Fernandes. "Ash from a pulp mill boiler-Characterisation and vitrification." Journal of Hazardous Materials. 179 (2010): 303-308. AbstractWebsite

The physical, chemical and mineralogical characterisation of the ash resulting from a pulp mill boiler was performed in order to investigate the valorisation of this waste material through the production of added-value glassy materials. The ash had a particle size distribution in the range 0.06-53μm, and a high amount of SiO2 (∼82wt%), which was present as quartz. To favour the vitrification of the ash and to obtain a melt with an adequate viscosity to cast into a mould, different amounts of Na2O were added to act as fluxing agent. A batch with 80wt% waste load melted at 1350°C resulting in a homogeneous transparent green-coloured glass with good workability. The characterisation of the produced glass by differential thermal analysis and dilatometry showed that this glass presents a stable thermal behaviour. Standard leaching tests revealed that the concentration of heavy metals in the leaching solution was lower than those allowed by the Normative. As a conclusion, by vitrification of batch compositions with adequate waste load and additive content it is possible to produce an ash-based glass that may be used in similar applications as a conventional silicate glass inclusively as a building ecomaterial. © 2010 Elsevier B.V.

Diniz, M. S., R. Maurício, M. Petrovic, M. J. L. De Alda, L. Amaral, I. Peres, D. Barceló, and F. Santana. "Assessing the estrogenic potency in a Portuguese wastewater treatment plant using an integrated approach." Journal of Environmental Sciences. 22 (2010): 1613-1622. AbstractWebsite
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Araújo, João, Edward Dobson, and Janusz Konieczny. "Automorphisms of endomorphism semigroups of reflexive digraphs." Math. Nachr.. 283 (2010): 939-964. AbstractWebsite
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Figueiredo, Ondina M., Teresa Pereira Silva, João Pedro Veiga, Maria Isabel Prudêncio, Maria Isabel Dias, MA Matos, and AM Pais. "Blue pigments in XVI-XVII century glazes: a comparative study between Portuguese faiences and Chinese porcelains." Selected Papers Archaeological and Arts Issues in Materials Science, Univ. Nac. Autónoma de México, 2010 (2010). Abstract
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Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, P. Inacio, and J. N. Marat-Mendes. "Charge Carriers Injection/Extraction at the Metal-Polymer Interface and Its Influence in the Capacitive Microelectromechanical Systems-Switches Actuation Voltage." Journal of Nanoscience and Nanotechnology. 10 (2010): 2503-2511. Abstract
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Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, P. Inacio, and J. N. Marat-Mendes. "Charge Carriers Injection/Extraction at the Metal-Polymer Interface and Its Influence in the Capacitive Microelectromechanical Systems-Switches Actuation Voltage." Journal of Nanoscience and Nanotechnology. 10 (2010): 2503-2511. AbstractWebsite

Opposite results concerning the sign of the parasitic charge accumulated at the metal dielectric contact in RF microelectromechanical systems (MEMS) capacitive switches are found in the literature. The mechanism concerning charge injection/extraction at the metal-dielectric contact and its influence on the pull-in voltage needs to be further clarified. A model-switch, for which only one dimension is in the microns range, is used to study the behaviour of a capacitive RF MEMS switch. The aim is to analyze how the electric charge is injected/extracted into or from the dielectric material under the applied field and to obtain realistic data to understand how this parasitic charge influences the pull-in voltage V-pi and the pull-off voltage V-po. A triangle voltage is employed to measure V-pi and V-po by measuring the isothermal charging/discharging currents. Our results demonstrate that V-pi is strongly dependent on the injected/extracted charge on the free surface of the dielectric. The charge injected/extracted at the bottom side of the dielectric has no influence on the actuation voltage. The charge injected/extracted on the free surface of the dielectric determines an increase of the modulus of V-pi and, eventually, the switch can fail to actuate. An estimation of the charge stored into the material was obtained (i) by measuring the charging current and the discharging current and (ii) from the value of the V-pi. The parasitic charge necessary to keep the bridge stick to the insulator is 5.3 x 10(-4) cm(-2) for our experimental conditions. The modification of the V-pi determined by the stored charge in the dielectric is analyzed. An increase of the relative dielectric permittivity by a factor of 2 produces a decrease of the actuation voltage of 10%. A variation of 30% in the elastic constant determines a variation of about 20% in the V-pi. A voltage threshold for charge injection/extraction was not observed.

Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, P. Inacio, and J. N. Marat-Mendes. "Charge Carriers Injection/Extraction at the Metal-Polymer Interface and Its Influence in the Capacitive Microelectromechanical Systems-Switches Actuation Voltage." Journal of Nanoscience and Nanotechnology. 10 (2010): 2503-2511. AbstractWebsite
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Pinto, R. M., A. A. Dias, M. L. Costa, and J. P. Santos. "Computational study on the ionization energies of benzyl azide and its methyl derivatives." Journal of Molecular Structure: THEOCHEM. 948 (2010): 15-20. AbstractWebsite
Ionization energies of benzyl azide (BA), C6H5CH2N3, its methyl derivatives, 2-, 3- and 4-methyl benzyl azide and (1-azidoethyl)benzene (2-, 3- and 4-MBA and 1-AEB), (CH3)C6H4CH2 N3, have been calculated with several basis sets, with M¯ller-Plesset and Hartree-Fock methods. The data are compared to the ionizations energies obtained from HeI photoelectron spectroscopy (UVPES) experiments, in order to support the correct assignment of the bands. The nature and character of the molecular orbitals are also discussed.
Pinto, R. M., A. A. Dias, M. L. Costa, and J. P. Santos. "Computational study on the ionization energies of benzyl azide and its methyl derivatives." Journal of Molecular Structure: THEOCHEM. 948 (2010): 15-20. AbstractWebsite

Ionization energies of benzyl azide (BA), C6H5CH2N3, its methyl derivatives, 2-, 3- and 4-methyl benzyl azide and (1-azidoethyl)benzene (2-, 3- and 4-MBA and 1-AEB), (CH3)C6H4CH2 N3, have been calculated with several basis sets, with M¯ller-Plesset and Hartree-Fock methods. The data are compared to the ionizations energies obtained from HeI photoelectron spectroscopy (UVPES) experiments, in order to support the correct assignment of the bands. The nature and character of the molecular orbitals are also discussed.

Costa, P. M., S. Caeiro, M. S. Diniz, J. Lobo, M. Martins, A. M. Ferreira, M. Caetano, C. Vale, T. Á. DelValls, and M. H. Costa. "A description of chloride cell and kidney tubule alterations in the flatfish Solea senegalensis exposed to moderately contaminated sediments from the Sado estuary (Portugal)." Journal of Sea Research. 64 (2010): 465-472. AbstractWebsite
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Dias, Ricardo J., João M. Lourenço, and João Costa Seco Detection of Snapshot Isolation Anomalies in Software Transactional Memory: A Statical Analysis Approach. Departamento de Informática FCT/UNL, 2010.
Teixeira, Bruno, João Louren{\c c}o, Eitan Farchi, Ricardo Dias, and Diogo Sousa. "Detection of Transactional Memory anomalies using static analysis." Proceedings of the 8th Workshop on Parallel and Distributed Systems: Testing, Analysis, and Debugging. PADTAD ’10. New York, NY, USA: ACM, 2010. 26-36. Abstract
Transactional Memory allows programmers to reduce the number of synchronization errors introduced in concurrent programs, but does not ensures its complete elimination. This paper proposes a pattern matching based approach to the static detection of atomicity violation, based on a path-sensitive symbolic execution method to model four anomalies that may affect Transactional Memory programs. The proposed technique may be used to to bring to programmer’s attention pairs of transactions that the programmer has mis-specified, and should have been combined into a single transaction. The algorithm first traverses the AST tree, removing all the non-transactional blocks and generating a trace tree in the path sensitive manner for each thread. The trace tree is a Trie like data structure, where each path from root to a leaf is a list of transactions. For each pair of threads, erroneous patterns involving two consecutive transactions are then checked in the trace tree. Results allow to conclude that the proposed technique, although triggering a moderate number of false positives, can be successfully applied to Java programs, correctly identifying the vast majority of the relevant erroneous patterns.
Lanca, M. C., M. Brandt, E. R. Neagu, C. J. Dias, and J. N. Marat-Mendes. "Dielectric spectra of natural cork and derivatives." Journal of Non-Crystalline Solids. 356 (2010): 763-767. AbstractWebsite

Cork is a cellular biomaterial that has unique characteristics that make it suitable for many types of applications. Since it is also an electrical insulator, the study of its electrical and dielectric properties can lead to new interesting applications. The moisture present in cork and derivatives has a very important role on the dielectric properties. In this work a composite made of both recycled cork and TetraPak (R) used containers was studied and compared with other cork products. The dielectric relaxation spectra of natural cork (as received), commercial cork agglomerate and of a composite cork/Tetrapak (R) was investigated in the temperature range of -50 to 120 degrees C and in the frequency range of 10(-1) Hz-2 MHz. For some samples of the composite a small amount of paraffin was added. The highest values for the imaginary part of the dielectric permittivity were found for the commercial material and the composite without paraffin. The lowest was found for the cork/TetraPak (R)/paraffin composite. The influence of humidity content was investigated for the composite with wax. Natural cork shows a peak around 80 degrees C (not seen in the derivative materials). The commercial agglomerate and the cork/TetraPak (R)/paraffin composite show a peak around 40-50 degrees C. In the composite this peak becomes smaller as humidity is removed. (C) 2009 Elsevier B.V. All rights reserved.

Lanca, M. C., M. Brandt, E. R. Neagu, C. J. Dias, and J. N. Marat-Mendes. "Dielectric spectra of natural cork and derivatives." Journal of Non-Crystalline Solids. 356 (2010): 763-767. Abstract
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Pinheiro, C., J. P. Baeta, A. M. Pereira, H. Domingues, and C. P. Ricardo. "Diversity of seed mineral composition of Phaseolus vulgaris L. germplasm." Journal of Food Composition and Analysis. 23 (2010): 319-325. AbstractWebsite

A collection of 155 accessions of ancient Portuguese common beans (Phaseolus vulgaris L) was evaluated in relation to the content of 8 minerals (Zn, Cu, Fe, Mn, Ca, Mg, P and K) important for human nutrition. A high degree of variability for P. Fe, Zn, Cu, Mn and Ca was observed in the collection. Total correlation matrix analysis revealed the existence of two important sets of strong positive correlations (P <= 0.0001), one involving P, Fe, Zn, Cu and protein, and the other Ca and Mn. The principal component analysis showed that Zn, Fe and Cu are highly correlated to the first component (27% of variability) and Mn and Ca to the second component (22% of the variability). The high mineral variability observed in the seeds of this common bean collection could be useful for the selection of cultivars with higher nutrition value and for the improvement of seed nutrition quality traits. (C) 2010 Elsevier Inc. All rights reserved.

Pinheiro, C., J. P. Baeta, A. M. Pereira, H. Domingues, and C. P. Ricardo. "Diversity of seed mineral composition of Phaseolus vulgaris L. germplasm." Journal of Food Composition and Analysis. 23 (2010): 319-325. AbstractWebsite
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Rocha-Santos, T., F. Ferreira, L. Silva, A. C. Freitas, R. Pereira, M. Diniz, L. Castro, I. Peres, and A. C. Duarte. "Effects of tertiary treatment by fungi on organic compounds in a kraft pulp mill effluent." Environmental Science and Pollution Research. 17 (2010): 866-874. AbstractWebsite
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