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2011
Domingues, T., J. R. Fernandes, and L. B. Oliveira. "Oscillator noise budget for ADC systems." Mixed Design of Integrated Circuits and Systems (MIXDES), 2011 Proceedings of the 18th International Conference. IEEE, 2011. 358-361. Abstract
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Aelenei, Laura, Roberto Lollini, Helder Gon, Daniel Aelenei, Masa Noguchi, Michael Donn, and Fran Garde. "Passive cooling approaches in net-zero energy solar buildings: lessons learned from demonstration buildings." CISBAT 2011 - CleanTec for Sustainable Buildings. 978-2-8399-0906-8. 2011. Abstract
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Capodicasa, Cristina, Paola Chiani, Carla Bromuro, Flavia De Bernardis, Marcello Catellani, Angelina S. Palma, Yan Liu, Ten Feizi, Antonio Cassone, Eugenio Benvenuto, and Antonella Torosantucci. "Plant production of anti-beta-glucan antibodies for immunotherapy of fungal infections in humans." Plant Biotechnology Journal. 9 (2011): 776-787. Abstract
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Watson, A. A., A. A. Lebedev, B. A. Hall, A. E. Fenton-May, A. A. Vagin, W. Dejnirattisai, J. Felce, J. Mongkolsapaya, A. S. Palma, Y. Liu, T. Feizi, G. R. Screaton, G. N. Murshudov, and C. A. O'Callaghan. "Structural flexibility and ligand-binding characteristics of the macrophage dengue virus receptor CLEC5A." Immunology. 135 (2011): 101. Abstract
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Watson, Aleksandra A., Andrey A. Lebedev, Benjamin A. Hall, Angharad E. Fenton-May, Alexei A. Vagin, Wanwisa Dejnirattisai, James Felce, Juthathip Mongkolsapaya, Angelina S. Palma, Yan Liu, Ten Feizi, Gavin R. Screaton, Garib N. Murshudov, and Christopher A. O'Callaghan. "Structural Flexibility of the Macrophage Dengue Virus Receptor CLEC5A IMPLICATIONS FOR LIGAND BINDING AND SIGNALING." Journal of Biological Chemistry. 286 (2011): 24208-24218. Abstract
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Pinto, R. M., A. A. Dias, M. Coreno, M. de Simone, B. M. Giuliano, J. P. Santos, and M. L. Costa. "Tautomerism in 5-methyltetrazole investigated by core-level photoelectron spectroscopy and ΔSCF calculations." Chemical Physics Letters. 516 (2011): 149-153. AbstractWebsite

The relative populations of the 1H- and 2H-tautomer of gas-phase 5-methyltetrazole (5MTZ) have been assessed through core-level photoelectron spectroscopy, and compared with the results obtained from Gaussian-n (Gn, n = 1, 2 and 3) and Complete Basis Set methods (CBS-4M and CBS-Q). The C 1s and N 1s core‚Äìelectron binding energies (CEBEs) for each ionization site of both tautomers have been computed using the Œîself-consistent-field (ŒîSCF) approach. The C 1s and N 1s XPS spectra, obtained at 313 K, yield a 1H/2H tautomer ratio of ca. 0.16/0.84 and 0.21/0.79, respectively.

Pinto, R. M., A. A. Dias, M. Coreno, M. de Simone, B. M. Giuliano, J. P. Santos, and M. L. Costa. "Tautomerism in 5-methyltetrazole investigated by core-level photoelectron spectroscopy and ΔSCF calculations." Chemical Physics Letters. 516 (2011): 149-153. AbstractWebsite

The relative populations of the 1H- and 2H-tautomer of gas-phase 5-methyltetrazole (5MTZ) have been assessed through core-level photoelectron spectroscopy, and compared with the results obtained from Gaussian-n (Gn, n = 1, 2 and 3) and Complete Basis Set methods (CBS-4M and CBS-Q). The C 1s and N 1s core‚Äìelectron binding energies (CEBEs) for each ionization site of both tautomers have been computed using the Œîself-consistent-field (ŒîSCF) approach. The C 1s and N 1s XPS spectra, obtained at 313 K, yield a 1H/2H tautomer ratio of ca. 0.16/0.84 and 0.21/0.79, respectively.

Carreira, R. J., M. S. Diniz, and J. L. Capelo. "Ultrasonic-based protein quantitation by18O-labeling: Optimization and comparison between different procedures." Rapid Communications in Mass Spectrometry. 25 (2011): 75-87. AbstractWebsite
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Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, P. Inacio, and J. N. Marat-Mendes. "The use of the final thermally stimulated discharge current technique to study the molecular movements around glass transition." Journal of Non-Crystalline Solids. 357 (2011): 385-390. Abstract
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Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, P. Inacio, and J. N. Marat-Mendes. "The use of the final thermally stimulated discharge current technique to study the molecular movements around glass transition." Journal of Non-Crystalline Solids. 357 (2011): 385-390. AbstractWebsite

During electric polarization charge is injected into the material. The structure is decorated with space charge and during the subsequent heating an apparent peak and the genuine peaks that are related to dipole randomization and charge detrapping are observed. The method is used here to analyze the molecular movements in polyimide in the temperature range from 293 to 623 K. Two weak relaxations have been observed around 337 K and around 402 K. The electrical conductivity changes with temperature in agreement with the Arrhenius law only below (W= (0.84 +/- 0.03) eV) and above ( W (0.82 +/- 0.03) eV) the temperature range where the beta relaxation is observed. The variation of the electrical conductivity with temperature, in the range of the beta relaxation, is controlled by the variation of the charge currier mobility with temperature and it shows a non-Arrhenius behavior. We suggest that the beta(1) sub-glass relaxation is related to the rotation or oscillation of phenyl groups and the beta(2) sub-glass relaxation is related to the rotation or oscillation of the imidic ring. At higher temperatures an apparent peak was observed. The relaxation time of the trapped charge, at 573 K, is high than 8895 s. (C) 2010 Elsevier B.V. All rights reserved.

Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, P. Inacio, and J. N. Marat-Mendes. "The use of the final thermally stimulated discharge current technique to study the molecular movements around glass transition." Journal of Non-Crystalline Solids. 357 (2011): 385-390. Abstract
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Poettner, W., L. Wolf, J. Cecílio, P. Furtado, R. M. Silva, Jorge Sá Silva, Alberto Cardoso, J. Brown, C. Sreenan, A. Klein, U. Roedig, V. Vassiliou, T. Voigt, T. O. Donovan, Z. He, Z. Zinonos, and P. Gil. "WSN Evaluation in Industrial Environments First results and lessons learned." DCOSS. n/a 2011. Abstract
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Silva, Simone S., Ana Rita C. Duarte, Ana Paula Carvalho, João F. Mano, and Rui L. Reis. "{Green processing of porous chitin structures for biomedical applications combining ionic liquids and supercritical fluid technology}." Acta Biomaterialia. 7 (2011): 1166-1172. Abstract

The application of green chemistry principles in the processing of materials for advanced technologies is a steadily increasing field of research. In this work porous chitin-based materials were developed by combining the processing of chitin using ionic liquids (ILs) as a green solvent together with the use of supercritical fluid technology (SCF) as clean technology. Chitin was dissolved in 1-butyl-3-imidazolium acetate, followed by regeneration of the polymer in ethanol in specific moulds. The IL was removed using Soxhlet extraction and successive steps of extraction with SCF using carbon dioxide/ethanol ratios of 50/50 and 70/30. The developed porous chitin-based structures (ChIL) can be classified as mesoporous materials, with very low density and high porosity. The cytotoxicity of ChIL extracts was investigated using L929 fibroblast-like cells, and the results demonstrated that the produced materials have extremely low cytotoxicity levels. Therefore, the findings suggest that the porous chitin structures may be potential candidates for a number of biomedical applications, including tissue engineering. © 2010 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Timoteo, Cristina G., Alice S. Pereira, Carlos E. Martins, Sunil G. Naik, Americo G. Duarte, Jose J. G. Moura, Pedro Tavares, Boi Hanh Huynh, and Isabel Moura. "{Low-Spin Heme b(3) in the Catalytic Center of Nitric Oxide Reductase from Pseudomonas nautica}." Biochemistry. 50 (2011): 4251-4262. Abstract
Respiratory nitric oxide reductase (NOR) was purified from membrane extract of Pseudomonas (Ps.) nautica cells to homogeneity as judged by polyacrylamide gel electrophoresis. The purified protein is a heterodimer with subunits of molecular masses of 54 and 18 kDa. The gene encoding both subunits was cloned and sequenced. The amino acid sequence shows strong homology with enzymes of the cNOR class. Iron/heme determinations show that one heme c is present in the small subunit (NORC) and that approximately two heme b and one non-heme iron are associated with the large subunit (NORB), in agreement with the available data for enzymes of the cNOR class. Mossbauer characterization of the as-purified, ascorbate-reduced, and dithionite-reduced enzyme confirms the presence of three heme groups (the catalytic heme b(3) and the electron transfer heme b and heme c) and one redox-active non-heme Fe (Fe-B). Consistent with results obtained for other cNORs, heme c and heme b in Ps. nautica cNOR were found to be low-spin while FeB was found to be high-spin. Unexpectedly, as opposed to the presumed high-spin state for heme b(3), the Mossbauer data demonstrate unambiguously that heme b(3) is, in fact, low-spin in both ferric and ferrous states, suggesting that heme b(3) is six-coordinated regardless of its oxidation state. EPR spectroscopic measurements of the as-purified enzyme show resonances at the g similar to 6 and g similar to 2-3 regions very similar to those reported previously for other cNORs. The signals at g = 3.60, 2.99, 2.26, and 1.43 are attributed to the two charge-transfer low-spin ferric heme c and heme b. Previously, resonances at the g similar to 6 region were assigned to a small quantity of uncoupled high-spin Fe-III heme b(3). This assignment is now questionable because heme b(3) is low-spin. On the basis of our spectroscopic data, we argue that the g = 6.34 signal is likely arising from a spin spin coupled binuclear center comprising the low-spin Fe-III heme b(3) and the high-spin Fe-B(III). Activity assays performed under various reducing conditions indicate that heme b(3) has to be reduced for the enzyme to be active. But, from an energetic point of view, the formation of a ferrous heme-NO as an initial reaction intermediate for NO reduction is disfavored because heme [FeNO](7) is a stable product. We suspect that the presence of a sixth ligand in the Fe-II-heme b(3) may weaken its affinity for NO and thus promotes, in the first catalytic step, binding of NO at the Fe-B(II) site. The function of heme b(3) would then be to orient the Fe-B-bound NO molecules for the formation of the N-N bond and to provide reducing equivalents for NO reduction.
Mendes, MJ, I. Tobías, A. Martí, and A. Luque. "{Near-field light focusing by wavelenght-sized dielectric spheroids for photovoltaic applications}." Optical Nanostructures and Advanced Materials for Photovoltaics - Concepts of Light Trapping and Photon Transport. Ed. Technical O. S. A. Digest. Vol. Renewable. Austin, Texas (USA): Optical Society of America, 2011. JThC. Abstract
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Duarte, A. R. C., J. F. Mano, and R. L. Reis. "{Thermosensitive polymeric matrices for three-dimensional cell culture strategies}." Acta Biomaterialia. 7 (2011). Abstract

A completely new strategy for cell culture focusing on the design of three-dimensional (3D) smart surfaces by supercritical fluid technology has been developed. This approach might overcome the limitations on cell expansion and proliferation of currently existing techniques. An alternative technology, based on supercritical carbon dioxide, was used to polymerize poly(N- isopropylacrylamide) (PNIPAAm) and to foam poly(d,l-lactic acid) (P D,L LA), creating a thermosensitive 3D structure which has proven to have potential as a substrate for cell growth and expansion. We demonstrated that the thermosensitive matrices promoted cell detachment, thus P D,L LA scaffolds have the potential to be used as substrates for cell growth and expansion avoiding enzymatic and mechanical methods of cell harvesting. The harvested cells were replated to evaluate their viability, which was not compromised. A major advantage of this technology is the fact that the prepared materials can be recovered and reused. Therefore, the same substrate can be recycled and reused for different batches. An indirect impact of the technology developed is related to the field of biotechnology, as this novel technology for cell expansion can be applied to any adherent cell cultures. © 2010 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

2010
Afonso, J., I. Catarino, D. Martins, J. Ricardo, R. Patricio, L. Duband, and G. Bonfait. "Energy storage unit: Solid state demonstrators at 20K and 6K." Cryogenics. 50 (2010): 522-528. Abstract

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Neagu, E. R., R. M. Neagu, C. J. Dias, Carmo M. Lança, and J. N. Marat-Mendes. "The analysis of isothermal current in terms of charge injection or extraction at the metal-dielectric contact." 356 (2010): 833-837. Abstract
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Neagu, E. R., R. M. Neagu, C. J. Dias, Carmo M. Lança, and J. N. Marat-Mendes. "The determination of the pull-in voltage from the condition of bridge stability." 5 (2010): 139-151. Abstract
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Lança, Carmo M., E. R. Neagu, C. Dias, and J. Marat-Mendes. "Dielectric spectra of natural cork and derivatives." Vol. 356. International Conference on Dielectric Spectroscopy and Its Applications, 356. 2010. 763-767. Abstract
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Mateus, O., G. Dyke, N. Motchurova-Dekova, P. Ivanov, and GD Kamenov. "The first record of a dinosaur from Bulgaria." Lethaia. 43 (2010): 88-94. Abstractmateus_et_al__2010_the_first_record_of_a_dinosaur_in_bulgaria._lethaia.pdfWebsite

A portion of a left humerus from the Upper Maastrichtian of Vratsa district (NW Bulgaria)
is shown to be from a non-avian theropod dinosaur: this is the first record of a
dinosaur from Bulgaria. We describe this bone, suggest that it most likely pertains to an
ornithomimosaur, and discuss the fossil record of other similar taxa of Late Cretaceous
age that have been reported from Europe. To investigate the taphonomy of this fossil,
rare earth element (REE) analysis is combined with strontium (Sr) isotope data to confirm
that this Bulgarian dinosaur bone was initially fossilized in a terrestrial environment,
then later re-worked into late Maastrichtian marine sediments.

Martins, R., L. Pereira, P. Barquinha, N. Correia, G. Gonçalves, I. Ferreira, C. Dias, and E. Fortunato. "{Floating gate memory paper transistor}." Eds. Ferechteh H. Teherani, David C. Look, Cole W. Litton, and David J. Rogers. Vol. 7603. 2010. 760314–11. Abstract
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Dell'acqua, S., S. R. Pauleta, P. M. P. de Sousa, E. Monzani, L. Casella, JJG Moura, and I. Moura. "A new CuZ active form in the catalytic reduction of N2O by nitrous oxide reductase from Pseudomonas nautica." Journal of Biological Inorganic Chemistry. 15 (2010): 967-976. AbstractWebsite

The final step of bacterial denitrification, the two-electron reduction of N2O to N-2, is catalyzed by a multi-copper enzyme named nitrous oxide reductase. The catalytic centre of this enzyme is a tetranuclear copper site called CuZ, unique in biological systems. The in vitro reconstruction of the activity requires a slow activation in the presence of the artificial electron donor, reduced methyl viologen, necessary to reduce CuZ from the resting non-active state (1Cu(II)/3Cu(I)) to the fully reduced state (4Cu(I)), in contrast to the turnover cycle, which is very fast. In the present work, the direct reaction of the activated form of Pseudomonas nautica nitrous oxide reductase with stoichiometric amounts of N2O allowed the identification of a new reactive intermediate of the catalytic centre, CuZA degrees, in the turnover cycle, characterized by an intense absorption band at 680 nm. Moreover, the first mediated electrochemical study of Ps. nautica nitrous oxide reductase with its physiological electron donor, cytochrome c-552, was performed. The intermolecular electron transfer was analysed by cyclic voltammetry, under catalytic conditions, and a second-order rate constant of (5.5 +/- A 0.9) x 10(5) M-1 s(-1) was determined. Both the reaction of stoichiometric amounts of substrate and the electrochemical studies show that the active CuZA degrees species, generated in the absence of reductants, can rearrange to the resting non-active CuZ state. In this light, new aspects of the catalytic and activation/inactivation mechanism of the enzyme are discussed.

Duarte, F. J. S., E. J. Cabrita, G. Frenking, and Gil A. Santos. "Asymmetric Intramolecular Aldol Reactions of Substituted 1,7-Dicarbonylic Compounds. A Mechanistic Study." Journal of Organic Chemistry. 75 (2010): 2546-2555. Abstract
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Da Silva, M. S., E. R. Vão, M. Temtem, L. Mafra, J. CALDEIRA, A. Aguiar-Ricardo, and T. Casimiro. "Clean synthesis of molecular recognition polymeric materials with chiral sensing capability using supercritical fluid technology. Application as HPLC stationary phases." Biosensors and Bioelectronics. 25.7 (2010): 1742-1747. AbstractWebsite
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