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2004
G. Blair, L. Blair, A. Rashid, A. Moreira, J. Araújo, and R. Chitchyan. "Engineering Aspect-Oriented Systems." Aspect-Oriented Software Development . Robert E. Filman, Tzilla Elrad, Siobhan Clarke, Mehmet Aksit ed. Addison-Wesley, 2004. Abstract

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Ortigueira, M. D., and AG Batista. "A Fractional Linear System View of the Fractional Brownian Motion." Nonlinear Dynamics.38 (2004): 295-303.
Lapa, N., J. Morais, C. Borges, B. Mendes, and J. F. Santos Oliveira. "An integrated approach to assess the biodegradability of a wastewater containing chromium by using chemical and biological methods." Global Symposium on Recycling, Waste Treatment and Clean Technology, REWAS’2004. Eds. I. Gaballah, B. Mishra, R. Solozabal, and M. Tanaka. San Sebastián: TMS/INASMET, 2004. 1351-1362. Abstractrewas04_lapa_et_al.pdf

The Water Company of the North Alentejo (Águas do Norte Alentejano) (Portugal) has decided to implement a treatment plant to treat an urban wastewater with a significant influence of tannery effluents. The design of the wastewater treatment plant was attributed to a consortium coordinated by Sisaqua Company. Since the levels of the biodegradability and toxicity of the wastewater to be treated were unknown, Sisaqua Company asked the New University of Lisboa to develop and execute a monitoring plan to define the chemical composition and the levels of the biodegradability and toxicity of the wastewater.
A composite sampling procedure of the wastewater was performed during a daily working cycle of the tanneries. The composite sample was characterized for 19 chemical parameters. Five of these parameters were total Cr, Cr (VI), Zn, Cu and Al, which were determined in the dissolved and suspended fractions. The composite sample was also submitted to a biological test to assess its biodegradability degree. This assay was performed according to the methodology indicated in the test 301E of OECD [1], taking into account the amendment of 1992. A respirometric assay was carried out, to assess the toxic effect of the composite sample on the biological populations involved in the biological stabilization of organic compounds. This assay followed the “Sapromat” methodology developed by Brabander and Vandeputte [2]. Finally, the composite sample was submitted to a coagulation-flocculation process according to the methodologies proposed by Eckenfelder [3, 4] and Pereira [5]. The supernatants were characterized for the same chemical and biological parameters as it was described for the composite sample.
It was possible to conclude that the high levels of Cr present in the composite wastewater were mainly in the trivalent oxidation state. Since this oxidation state is less toxic for biological populations than the Cr (VI) and this metal was mainly in the suspended fraction, it was possible to obtain a biodegradability of the organic compounds quite similar to those observed for domestic wastewaters. The toxicity determined by the “Sapromat” method was slightly higher than those determined for domestic wastewaters. Nevertheless, this toxicity did not affect significantly the wastewater biodegradability. The Cr (III) was easily removed by a chemical coagulation-flocculation process.

Varandas, J. N., and J. P. Bilé Serra. "Modelação da excitação superficial do terreno e sua utilização na estimativa de perfis de módulos de corte através da análise espectral de ondas de superfície." 6º Congresso Nacional de Sismologia e Engenharia Sísmica. Guimarães, Portugal 2004.
Barros, M. T., K. T. Petrova, and A. M. Ramos. "Regioselective Copolymerisation of Acryl Sucrose Monomers." J. Org. Chem. 69.22 (2004): 7772-7775. DOI: 10.1021/jo048957y.
Semigroups and languages. Eds. Isabel M. Araújo, Mário J. J. Branco, V{\'ı}tor H. Fernandes, and Gracinda M. S. Gomes. Proceedings of the workshop held at the University of Lisbon, Lisboa, November 27–29, 2002. River Edge, NJ: World Scientific Publishing Co. Inc., 2004.
Bica Oliveira, L., J. R. Fernandes, I. M. Filanovsky, and C. J. M. Verhoeven. "A 2.4 GHz CMOS quadrature LC-oscillator/mixer." Circuits and Systems, 2004. ISCAS'04. Proceedings of the 2004 International Symposium on. Vol. 1. IEEE, 2004. I–165. Abstract
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Bursakov, SA, OY Gavel, G. Di Rocco, J. Lampreia, J. Calvete, AS Pereira, JJG Moura, and I. Moura. "Antagonists Mo and Cu in a heterometallic cluster present on a novel protein (orange protein) isolated from Desulfovibrio gigas." Journal of Inorganic Biochemistry. 98 (2004): 833-840. AbstractWebsite

An orange-coloured protein (ORP) isolated from Desulfovibrio gigas, a sulphate reducer, has been previously shown by extended X-ray absorption fine structure (EXAFS) to contain a novel mixed-metal sulphide cluster of the type [S2MoS2CuS2MoS2] [J. Am. Chem. Soc. 122 (2000) 8321]. We report here the purification and the biochemical/spectroscopic characterisation of this novel protein. ORP is a soluble monomeric protein (11.8 kDa). The cluster is non-covalently bound to the polypeptide chain. The presence of a MoS42- moiety in the structure of the cofactor contributes with a quite characteristic UV-Vis spectra, exhibiting an orange colour, with intense absorption peaks at 480 and 338 nm. Pure ORP reveals an Abs(480)/Abs(338) ratio of 0.535. The gene sequence coding for ORP as well as the amino acid sequence was determined. The putative biological function of ORP is discussed. (C) 2003 Elsevier Inc. All rights reserved.

Santos-Silva, T., JM Dias, G. Bourenkov, H. Bartunik, I. Moura, and MJ Romão. "Crystallization and preliminary X-ray diffraction analysis of the 16-haem cytochrome of Desulfovibrio gigas." Acta Crystallographica Section D: Biological Crystallography. 60 (2004): 968-970. Abstract
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Martins, R., D. Costa, H. Águas, F. Soares, A. Marques, I. Ferreira, P. Borges, and E. Fortunato. "Detection Limits of a nip a-Si: H Linear Array Position Sensitive Detector." MRS Proceedings. 808.1 (2004). Abstract
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Martins, R., D. Costa, H. Águas, F. Soares, A. Marques, I. Ferreira, P. Borges, and E. Fortunato. "Detection Limits of a nip a-Si: H Linear Array Position Sensitive Detector." MRS Proceedings. Vol. 808. Cambridge University Press, 2004. A4-45. Abstract
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Carvalho, AL, A. Goyal, JAM Prates, DN Bolam, HJ Gilbert, VMR Pires, LMA Ferreira, A. Planas, MJ Romao, and CMGA Fontes. "The family 11 carbohydrate-binding module of Clostridium thermocellum Lic26A-Cel5E accommodates beta-1,4- and beta-1,3-1,4-mixed linked glucans at a single binding site." Journal of Biological Chemistry. 279 (2004): 34785-34793. Abstract
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Pereira, LuÍs, Isabel Ferreira, Rodrigo Martins, Hugo Águas, Elvira Fortunato, Leandro Raniero, S. Zang, and L. Boufendi. "Growth of Polymorphous/Nanocrystalline Silicon Films Deposited by PECVD at 13.56 MHz." Materials Science Forum. 455 (2004): 532-535. Abstract
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Raniero, Leandro, Rodrigo Martins, Hugo Águas, S. Zang, Isabel Ferreira, Lu{\'ıs Pereira, Elvira Fortunato, and L. Boufendi. "Growth of polymorphous/nanocrystalline silicon films deposited by PECVD at 13.56 MHz." Materials Science Forum. Vol. 455. Trans Tech Publications, 2004. 532-535. Abstract
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Borza, Paul Nicolae, Gheorghe Scutaru, Lu{\'ı}s Gomes, Anikó Costa, and Laszlo Lazar. "Implementation of a remote and virtual laboratory in the field of home appliance systems." e-learning and Virtual and Remote Laboratories, Proceedings of the 1st International Workshop on e-learning and Virtual and Remote Laboratories, {VIRTUAL-LAB} 2004, In conjunction with {ICINCO} 2004, Setúbal, Portugal, August 2004. 2004. 60-68. Abstract
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Barquinha, P., Pereira Águas Fortunato Martins L. H. E. "Influence of the deposition conditions on the properties of titanium oxide produced by r.f. magnetron sputtering." Materials Science in Semiconductor Processing. 7 (2004): 243-247. AbstractWebsite

This work refers to the electro-optical and structural characteristics of titanium oxide (TiOx) thin films produced by radio frequency (r.f.) magnetron sputtering that present promising performances for gate dielectric applications, alone or in mixed tandem structures, such as with Al yOz films, taking advantage of its high dielectric constant. Films produced with a O2/Ar ratio between 0.1 and 0.15 present an improved stochiometry and density where the resistivity overcomes 1011 Ω cm and the fixed charge density decreases below 10 12 cm-2. The deposition pressure influences greatly the growth rate that seems to be a determinant factor dictating the films properties. © 2004 Elsevier Ltd. All rights reserved.

Barquinha, P., L. Pereira, H. Aguas, E. Fortunato, and R. Martins. "Influence of the deposition conditions on the properties of titanium oxide produced by rf magnetron sputtering." Materials science in semiconductor processing. 7 (2004): 243-247. Abstract
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Fortunato, E., P. Barquinha, A. Pimentel, A. Goncalves, L. Pereira, A. Marques, and R. Martins. "Next generation of thin film transistors based on zinc oxide." Integration of Advanced Micro-and Nanoelectronic Devices-Critical Issues and Solutions. Eds. J. Morais, D. Kumar, M. Houssa, R. K. Singh, D. Landheer, R. Ramesh, R. M. Wallace, S. Guha, and H. Koinuma. Vol. 811. Materials Research Society Symposium Proceedings, 811. 2004. 347-352. Abstract
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Godinho, M. H., AC Trindade, J. L. Figueirinhas, D. Vidal, LV Melo, and P. Brogueira. "Organized structures obtained from urethane/urea elastomers." Synthetic metals. 147.1 (2004): 209-213. Abstract
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Dias, JM, T. Alves, C. Bonifacio, AS Pereira, J. Trincao, D. Bourgeois, I. Moura, and MJ Romao. "Structural basis for the mechanism of Ca2+ activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617." Structure. 12 (2004): 961-973. AbstractWebsite

Cytochrome c peroxidase (CCP) catalyses the reduction of H2O2 to H2O, an important step in the cellular detoxification process. The crystal structure of the di-heme CCP from Pseudomonas nautica 617 was obtained in two different conformations in a redox state with the electron transfer heme reduced. Form IN, obtained at pH 4.0, does not contain Ca2+ and was refined at 2.2 Angstrom resolution. This inactive form presents a closed conformation where the peroxidatic heme adopts a six-ligand coordination, hindering the peroxidatic reaction from taking place. Form OUT is Ca2+ dependent and was crystallized at pH 5.3 and refined at 2.4 Angstrom resolution. This active form shows an open conformation, with release of the distal histidine (His71) ligand, providing peroxide access to the active site. This is the first time that the active and inactive states are reported for a di-heme peroxidase.

Dyke, J. M., G. Levita, A. Morris, J. S. Ogden, A. A. Dias, M. Algarra, J. P. Santos, M. L. Costa, P. Rodrigues, and M. T. Barros. "A Study of the Thermal Decomposition of 2-Azidoacetamide by Ultraviolet Photoelectron Spectroscopy and Matrix-Isolation Infrared Spectroscopy:  Identification of the Imine Intermediate H2NCOCHNH." The Journal of Physical Chemistry A. 108 (2004): 5299-5307. AbstractWebsite

The thermal decomposition of 2-azidoacetamide (N3CH2CONH2) has been studied by matrix-isolation infrared spectroscopy and real-time ultraviolet photoelectron spectroscopy. N2, CH2NH, HNCO, CO, NH3, and HCN are observed as high-temperature decomposition products, while at lower temperatures, the novel imine intermediate H2NCOCHNH is observed in the matrix-isolation IR experiments. The identity of this intermediate is confirmed both by ab initio molecular orbital calculations of its IR spectrum and by the temperature dependence and distribution of products in the photoelectron spectroscopy (PES) and IR studies. Mechanisms are proposed for the formation and decomposition of the intermediate consistent both with the observed results and with estimated activation energies based on pathway calculations.

Borges, J. P., M. H. Godinho, AF Martins, DF Stamatialis, M. N. de Pinho, and M. N. Belgacem. "Tensile properties of cellulose fiber reinforced hydroxypropylcellulose films." Polymer composites. 25.1 (2004): 102-110. Abstract
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Martins, Rodrigo, Elvira Fortunato, P. Nunes, I. Ferreira, A. Marques, M. Bender, N. Katsarakis, V. Cimalla, and G. Kiriakidis. "Zinc oxide as an ozone sensor." Journal of Applied Physics. 96.3 (2004): 1398-1408. Abstract
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Silva, Rui Jorge C., Francisco Manuel Braz Fernandes, LuÍs Pereira, António Marques, Isabel Ferreira, Rodrigo Martins, Hugo Águas, Elvira Fortunato, V. Assunção, and Alexandra Gonçalves. "ZnO: Ga thin films produced by RF sputtering at room temperature: Effect of the power density." Materials Science Forum. 455 (2004): 12-15. Abstract
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