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2001
Correia, C., C. Carneiro, S. Besson, G. Fauque, J. Lampreia, I. Moura, and JJG Moura. "Spectroscopic characterization of the membrane nitrate reductase isolated from Pseudomonas nautica." JOURNAL OF INORGANIC BIOCHEMISTRY. 86 (2001): 186.
Valtchev, Stanimir, Beatriz Borges, and Ben J. Klaassens. "Series Resonant Converter Applied to Contactless Energy Transmission." 3rd Conference on Telecommunications CONFTELE. 2001. 474-478.
Ribeiro, J. P., A. P. Jesus, B. Braizinha, J. Cruz, R. Mateus, and JV Pinto. "Experimental study of the F-19(p,alpha gamma)O-16 reaction." Nuclear Physics A. 688.1-2 (2001): 468C-471C. AbstractWebsite
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Chastre Rodrigues, C., and M. G. Silva. "Experimental Investigation of CFRP Reinforced Concrete Columns under Uniaxial Cyclic Compression." FRPRCS-5, 5th International Conference on Fibre Reinforced Plastics for Reinforced Concrete Structures. Ed. Chris Burgoyne. Cambridge, UK: Thomas Telford Ltd, 2001. 784-792. Abstractchastre_rodrigues2001si_-_frprcs-5.pdf

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Batista, AG, J. M. Rodrigues, and M. D. Ortigueira. "Time-Frequency and Time-Scale Characterisation of the Beat-by-Beat High-Resolution Electrocardiogram." Sixth Portuguese Conference on Biomedical Engineering Proceedings. 2001.
Martins, Rodrigo, Pedro Teodoro, Fernando Soares, Isabel Ferreira, Nuno Guimarães, Elvira Fortunato, Joao Borges, Guilhermino José, Achim Groth, and Lotar Schultze. "Application of Amorphous Silicon Thin‐Film Position‐Sensitive Detector to Optical Rules." Advanced Engineering Materials. 3.3 (2001): 174-177. Abstract
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Borges, J. P., M. H. Godinho, AF Martins, AC Trindade, and M. N. Belgacem. "Cellulose-based composite films." Mechanics of Composite Materials. 37.3 (2001): 257-264. Abstract
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Di Rocco, G., AS Pereira, SA Bursakov, OY Gavel, F. Rusnak, J. Lampreia, JJG Moura, and I. Moura. "Cloning of a novel Mo-Cu containing protein from Desulfovibrio.gigas." Journal of Inorganic Biochemistry. 86 (2001): 202. AbstractWebsite
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Baía, I., Fernandes Nunes Quintela Martins B. P. M. "Influence of the process parameters on structural and electrical properties of r.f. magnetron sputtering ITO films." Thin Solid Films. 383 (2001): 244-247. AbstractWebsite

This paper presents results of the role of the oxygen concentration (CO) and the deposition pressure (pd) on structural and electrical properties of indium tin oxide films produced by r.f. magnetron sputtering. The films were annealed in air, followed by a reannealed stage in hydrogen, aiming to improve the film's transparency and conductivity. The results achieved show that the films texture grain size, structure and compactness is more influenced by CO than by pd, the same does not happen with the electrical properties.

de Carvalho, Nunes C., A. Luis, G. Lavareda, A. Amaral, P. Brogueira, and M. H. Godinho. "ITO thin films deposited by RTE on flexible transparent substrates." Optical Materials. 17.1 (2001): 287-290. Abstract
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Braz Fernandes, Francisco Manuel, Isabel Ferreira, Rodrigo Martins, A. Cabrita, and Elvira Fortunato. "Large-Area Polycrystalline p-Type Silicon Films Produced by the Hot Wire Technique." Solid State Phenomena. 80 (2001): 47-52. Abstract
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Borges, João Paulo, Maria Helena Godinho, Mohamed Naceur Belgacem, and Assis Farinha Martins. "New bio-composites based on short fibre reinforced hydroxypropylcellulose films." Composite interfaces. 8.3-4 (2001): 233-241. Abstract
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Cabrito, I., AS Pereira, P. Tavares, S. Besson, C. Brondino, B. Hoffman, K. Brown, M. Tegoni, C. Cambillau, JJG Moura, and I. Moura. "Nitrous oxide reductase (N2OR) from Pseudomonas nautica 617." Journal of Inorganic Biochemistry. 86 (2001): 165. AbstractWebsite
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Araújo, Isabel M., Mário J. J. Branco, Vitor H. Fernandes, Gracinda M. S. Gomes, and N. Ruškuc. "On generators and relations for unions of semigroups." Semigroup Forum. 63 (2001): 49-62.
Fortunato, E., D. Brida, I. Ferreira, H. Águas, P. Nunes, and R. Martins. "Production and characterization of large area flexible thin film position sensitive detectors." Thin Solid Films. 383.1 (2001): 310-313. Abstract
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Fortunato, E., D. Brida, I. Ferreira, H. Águas, P. Nunes, and R. Martins. "Production and characterization of large area flexible thin film position sensitive detectors." Thin Solid Films. 383 (2001): 310-313. Abstract
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Godinho, Maria Helena, Assis Farinha Martins, Mohamed Naceur Belgacem, Luís Gil, and Nereida Cordeiro Properties and processing of cork powder filled cellulose derivatives composites. Vol. 169. Macromolecular Symposia, 169.1. WILEY‐VCH Verlag GmbH, 2001. Abstract
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Baldwin, J., W. C. Voegtli, N. Khidekel, P. Moenne-Loccoz, C. Krebs, AS Pereira, B. A. Ley, BH HUYNH, T. M. Loehr, P. J. Riggs-Gelasco, A. C. Rosenzweig, and J. M. Bollinger. "Rational reprogramming of the R2 subunit of Escherichia coli ribonucleotide reductase into a self-hydroxylating monooxygenase." Journal of the American Chemical Society. 123 (2001): 7017-7030. AbstractWebsite

The outcome of O-2 activation at the diiron(II) cluster in the R2 subunit of Escherichia coli (class I) ribonucleotide reductase has been rationally altered from the normal tyrosyl radical (Y122)(1) production to self-hydroxylation of a phenylalanine side-chain by two amino acid substitutions that leave intact the (histidine)(2)-(carboxylate)(4) ligand set characteristic of the diiron-carboxylate family. Iron ligand Asp (D) 84 was replaced with Glu (E), the amino acid found in the cognate position of the structurally similar diiron-carboxylate protein, methane monooxygenase hydroxylase (MMOH). We previously showed that this substitution allows accumulation of a mu -1,2-peroxodiiron(III) intermediate,(2 3) which does not accumulate in the wild-type (wt) protein and is probably a structural homologue of intermediate P (H-peroxo) in O-2 activation by MMOH.(4) In addition, the near-surface residue Trp (W) 48 was replaced with Phe (F), blocking transfer of the "extra" electron that occurs in wt R2 during formation of the formally Fe(LII)Fe(IV) cluster X.(5-7) Decay of the mu1,2-peroxodiiron(III) complex in R2-W38F/D84E gives an initial brown product, which contains very little YI22(.) and which converts very slowly (t(1/2) similar to 7 h) upon incubation at 0 degreesC to an intensely purple final product. X-ray crystallographic analysis of the purple product indicates that F208 has undergone epsilon -hydroxylation and the resulting phenol has shifted significantly to become st ligand to Fe2 of the diiron cluster. Resonance Raman (RR) spectra of the purple product generated with O-16(2) or O-18(2) show appropriate isotopic sensitivity in bands assigned to O-phenyl and Fe-O-phenyl vibrational modes, confirming that the oxygen of the Fe(III)-phenolate species is derived from Or. Chemical analysis, experiments involving interception of the hydroxylating intermediate with exogenous reductant, and Mossbauer and EXAFS characterization of the brown and purple species establish that F208 hydroxylation occurs during decay of the peroxo complex and formation of the initial brown product. The slow transition to the purple Fe(LII)-phenolate species is ascribed to a ligand rearrangement in which mu -O2- is lost and the F208-derived phenolate coordinates. The reprogramming to F208 monooxygenase requires both amino acid substitutions, as very little epsilon -hydroxyphenylalanine is formed and pathways leading to Y122(.) formation predominate in both R2-D84E and R2-W48F(2-7).

Indelicato, P., G. C. Rodrigues, E. Lindroth, M. A. Ourdane, F. Parente, J. P. Santos, P. Patté, and J. Bieron. "Relativistic and many-body effects on total binding energies of Cesium and other highly-charged ion." Physica Scripta. T92 (2001): 327. Abstract

The determination of atomic masses from highly ionized atoms using Penning Traps requires precise values for electronic binding energies. In the present work, binding energies of several ions (from several elements) are calculated in the framework of two relativistic many-body methods: Relativistic Many-Body Perturbation Theory (RMBPT) and Multi-Configuration Dirac– Fock (MCDF). The ions studied in this work are: Cl (He and Li-like), Se (F and Ne-like), Cs (He, Be, Ne, Al, Cl, Ar, K, Kr, Xe-like and neutral Cs), Hg, Pb and U (Br and Kr-like). Some of them are presented in this paper. Cesium has been treated in more details, allowing for a systematic comparison between MCDF and RMBPT methods. The Cs ions binding energies allow for the determination of atomic Cs mass, which can be used in a QED-independent fine structure constant determination.

Indelicato, P., E. Lindroth, T. Beier, J. Bieron, A. M. Costa, I. Lindgren, J. P. Marques, A. M. Martenson-Pendrill, M. C. Martins, M. A. Ourdane, F. Parente, P. Patté, G. C. Rodrigues, S. Salomonson, and J. P. Santos. "Relativistic Calculations for Trapped Ions." Hyperfine Interactions. 132 (2001): 347-361. AbstractWebsite

We present recent results in the field of total binding energy calculations, Landщ factors, quantum electrodynamics corrections and lifetime that are of interest for ion traps and ion sources. We describe in detail MCDF and RMBPT calculation of ionic binding energies, which are needed for the determination of atomic masses from highly charged ion measurements. We also show new results concerning Landщ factor in 3-electron ions. Finally we describe how relativistic calculations can help understand the physics of heavy ion production ion sources.

Ferreira, I., A. Cabrita, F. Braz Fernandes, E. Fortunato, and R. Martins. "Role of the gas pressure and hydrogen dilution on the properties of large area nanocrystalline p-type silicon films produced by hot wire technique." Materials Science and Engineering: C. 15.1 (2001): 141-144. Abstract
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Cabrita, A., L. Pereira, D. Brida, A. Lopes, A. Marques, I. Ferreira, E. Fortunato, and R. Martins. "Silicon carbide photodiodes: Schottky and PINIP structures." Applied surface science. 184.1 (2001): 437-442. Abstract
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Alves, T., S. Besson, AS Pereira, G. W. Pettigrew, JJG Moura, and I. Moura. "Structure-function studies of cytochrome c peroxidase from ps. nautica." Journal of Inorganic Biochemistry. 86 (2001): 122. AbstractWebsite
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Franco, R., AS Pereira, P. Tavares, A. Mangravita, MJ Barber, I. Moura, and GC Ferreira. "Substitution of murine ferrochelatase glutamate-287 with glutamine or alanine leads to porphyrin substrate-bound variants." Biochemical Journal. 356 (2001): 217-222. AbstractWebsite

Ferrochelatase (EC 4.99.1.1) is the terminal enzyme of the haem biosynthetic pathway and catalyses iron chelation into the protoporphyrin IX ring. Glutamate-287 (E287) of murine mature ferrochelatase is a conserved residue in all known sequences of ferrochelatase, is present at the active site of the enzyme, as inferred from the Bacillus subtilis ferrochelatase three-dimensional structure, and is critical for enzyme activity. Substitution of E287 with either glutamine (Q) or alanine (A) yielded variants with lower enzymic activity than that of the wild-type ferrochelatase and with different absorption spectra from the wild-type enzyme. In contrast to the wild-type enzyme, the absorption spectra of the variants indicate that these enzymes, as purified, contain protoporphyrin IX. Identification and quantification of the porphyrin bound to the E287-directed variants indicate that approx. 80% of the total porphyrin corresponds to protoporphyrin IX. Significantly, rapid stopped-flow experiments of the E287A and E287Q Variants demonstrate that reaction with Zn2+ results in the formation of bound Zn-protoporphyrin IX, indicating that the endogenously bound protoporphyrin IX can be used as a substrate. Taken together, these findings suggest that the structural strain imposed by ferrochelatase on the porphyrin substrate as a critical step in the enzyme catalytic mechanism is also accomplished by the E287A and E287Q variants, but without the release of the product. Thus E287 in murine ferrochelatase appears to be critical For the catalytic process by controlling the release of the product.

Cabrita, A., J. Figueiredo, L. Pereira, H. Aguas, V. Silva, D. Brida, I. Ferreira, E. Fortunato, and R. Martins. "Thin film position sensitive detectors based on pin amorphous silicon carbide structures." Applied surface science. 184.1 (2001): 443-447. Abstract
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