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2001
Cabrita, A., J. Figueiredo, L. Pereira, H. Aguas, V. Silva, D. Brida, I. Ferreira, E. Fortunato, and R. Martins. "Thin film position sensitive detectors based on pin amorphous silicon carbide structures." Applied surface science. 184 (2001): 443-447. Abstract
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Cabrito, I., AS Pereira, P. Tavares, S. Besson, C. Brondino, B. Hoffman, K. Brown, M. Tegoni, C. Cambillau, JJG Moura, and I. Moura. "{Nitrous oxide reductase (N2OR) from Pseudomonas nautica 617}." Journal Of Inorganic Biochemistry. 86 (2001): 165.
Cabrita, A., L. Pereira, D. Brida, A. Lopes, A. Marques, I. Ferreira, E. Fortunato, and R. Martins. "{Silicon carbide photodiodes: Schottky and PINIP structures}." Applied Surface Science. 184 (2001): 437-442. AbstractWebsite
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Franco, R., AS Pereira, P. Tavares, A. Mangravita, MJ Barber, I. Moura, and GC Ferreira. "{Substitution of murine ferrochelatase glutamate-287 with glutamine or alanine leads to porphyrin substrate-bound variants}." Biochemical Journal. 356 (2001): 217-222. Abstract
Ferrochelatase (EC 4.99.1.1) is the terminal enzyme of the haem biosynthetic pathway and catalyses iron chelation into the protoporphyrin IX ring. Glutamate-287 (E287) of murine mature ferrochelatase is a conserved residue in all known sequences of ferrochelatase, is present at the active site of the enzyme, as inferred from the Bacillus subtilis ferrochelatase three-dimensional structure, and is critical for enzyme activity. Substitution of E287 with either glutamine (Q) or alanine (A) yielded variants with lower enzymic activity than that of the wild-type ferrochelatase and with different absorption spectra from the wild-type enzyme. In contrast to the wild-type enzyme, the absorption spectra of the variants indicate that these enzymes, as purified, contain protoporphyrin IX. Identification and quantification of the porphyrin bound to the E287-directed variants indicate that approx. 80% of the total porphyrin corresponds to protoporphyrin IX. Significantly, rapid stopped-flow experiments of the E287A and E287Q Variants demonstrate that reaction with Zn2+ results in the formation of bound Zn-protoporphyrin IX, indicating that the endogenously bound protoporphyrin IX can be used as a substrate. Taken together, these findings suggest that the structural strain imposed by ferrochelatase on the porphyrin substrate as a critical step in the enzyme catalytic mechanism is also accomplished by the E287A and E287Q variants, but without the release of the product. Thus E287 in murine ferrochelatase appears to be critical For the catalytic process by controlling the release of the product.
2000
Kapur, GS, E. J. Cabrita, and S. Berger. "The qualitative probing of hydrogen bond strength by diffusion-ordered NMR spectroscopy." Tetrahedron Letters. 41 (2000): 7181-7185. Abstract
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Moniz, António, Sara Casaca, Mário Bairrada, and Conceição Moreno I&D, inovação e fomento de emprego: ideias chave de uma relação[R&D, innovation and job creation: key-ideas of a relation]. University Library of Munich, Germany, 2000. Abstract

The increasing degree of inter-dependency and integration of economy at a global scale motivated the globalization of scientific and technological knowledge from manufacturing, to the marketing and the strategic management of companies that act as protagonists of these processes. Globalization of markets is inter-connected with intensive incorporation of knowledge in economy. In this sense the continuous evolution of the manufacturing industry structure for an increased high intensity technology elements, namely information and communication technologies, implies that these industrial sub-sectors are conditioning the global performance of economy, the productivity gains and as a consequence the levels of economical and employment growth. This study on “R&D, Innovation and Employment Creation” for the Portuguese Observatory of Employment and Vocational Training (IEFP-MQE) is updating information on the articulation between Job creation, innovation, technology, and R&D. A diagnosis of the state of national S&T research and of processes of technological and organizational innovation was made, as well of the interfacing structures between the knowledge sector and the economical activities. Were made 12 case studies at companies with some innovation activities, interviews to unionists and to Professional associations, and public offices. Was made also a survey to a selected sample of technological infrastructures.

Amaral, P., M. W. Trosset, and P. Barahona Correcting an inconsistent system of linear inequalities by nonlinear programming. Houston, TX 77005: Department of Computational & Applied Mathematics, Rice University, 2000. Abstract
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Amaral, P., M. W. Trosset, and P. Barahona Correcting an Inconsistent System of Linear Inequalities by Nonlinear Programming. TX 77005, Houston: Department of Computational & Applied Mathematics, Rice University, 2000. Abstract
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Fortunato, Elvira, Donatello Brida, Isabel M. M. Ferreira, HMB Åguas, Patrícia Nunes, Ana Cabrita, Franco Giuliani, Yuri Nunes, and Manuel JP Maneira. "Large Area Flexible Amorphous Silicon Position Sensitive Detectors." MRS Proceedings. 609.1 (2000). Abstract
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Brown, K., M. Tegoni, M. Prudencio, AS Pereira, S. Besson, J. J. Moura, I. Moura, and C. Cambillau. "A novel type of catalytic copper cluster in nitrous oxide reductase." Nature Structural Biology. 7 (2000): 191-195. AbstractWebsite

Nitrous oxide (N(2)O) is a greenhouse gas, the third most significant contributor to global warming. As a key process for N(2)O elimination from the biosphere, N(2)O reductases catalyze the two-electron reduction of N(2)O to N(2). These 2 x 65 kDa copper enzymes are thought to contain a CuA electron entry site, similar to that of cytochrome c oxidase, and a CuZ catalytic center. The copper anomalous signal was used to solve the crystal structure of N(2)O reductase from Pseudomonas nautica by multiwavelength anomalous dispersion, to a resolution of 2.4 Angstrom. The structure reveals that the CuZ center belongs to a new type of metal cluster, in which four copper ions are liganded by seven histidine residues. N(2)O binds to this center via a single copper ion. The remaining copper ions might act as an electron reservoir, assuring a fast electron transfer and avoiding the formation of dead-end products.

Fortunato, E., P. Teodoro, V. Silva, I. Ferreira, Y. Nunes, N. Guimarães, F. Soares, F. Giuliani, G. Popovic, and W. Brener. "Performances of an optical ruler based on one-dimensional hydrogenated amorphous Si position-sensitive detectors produced using different metal contacts." Philosophical Magazine B. 80.4 (2000): 765-774. Abstract
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Prudencio, M., AS Pereira, P. Tavares, S. Besson, I. Cabrito, K. Brown, B. Samyn, B. Devreese, J. VanBeeumen, F. Rusnak, G. Fauque, JJG Moura, M. Tegoni, C. Cambillau, and I. Moura. "Purification, characterization, and preliminary crystallographic study of copper-containing nitrous oxide reductase from Pseudomonas nautica 617." Biochemistry. 39 (2000): 3899-3907. AbstractWebsite

The aerobic purification of Pseudomonas nautica 617 nitrous oxide reductase yielded two forms of the enzyme exhibiting different chromatographic behaviors. The protein contains six copper atoms per monomer, arranged in two centers named CUA and Cut. Cut could be neither oxidized nor further reduced under our experimental conditions, and exhibits a 4-line EPR spectrum (g(x)= 2.015, A(x) = 1.5 mT, g(y) = 2.071, A(y) = 2 mT, g(z) = 2.138, A(z) = 7 mT) and a strong absorption at similar to 640 nm. Cu-A can be stabilized in a reduced EPR-silent state and in an oxidized state with a typical 7-line EPR spectrum (g(x) g(y) = 2.021, A(x) = A(y) = 0 T, g(z) =0.178, A(z) = 4 mT) and absorption bands at 480, 540, and similar to 800 nm. The difference between the two purified forms of nitrous oxide reductase is interpreted as a difference in the oxidation state of the CuA center. In form A, CUA is predominantly oxidized (S = 1/2, Cu1.5+-Cu1.5+), while in form B it is mostly in the one-electron reduced state (S = 0, Cu1+-Cu1+). In both forms, Cu-Z remains reduced (S = 1/2). Complete crystallographic data at 2.4 Angstrom indicate that Cu-A is a binuclear site (similar to the site found in cytochrome c oxidase) and Cu-Z is a novel tetracopper cluster [Brown, K., et ai. (2000) Nat. Struct. Biol. (in press)]. The complete amino acid sequence of the enzyme was determined and comparisons made with sequences of other nitrous oxide reductases, emphasizing the coordination of the centers. A 10.3 kDa peptide copurified with both forms of nitrous oxide reductase shows strong homology with proteins of the heat-shock GroES chaperonin family.

Silva, R. J. C., FMB Fernandes, AJ Bottger, R. Delhez, and EJ Mittemeijer. "Stress state prediction applied to local composition changes." Ecrs 5: Proceedings of the Fifth European Conference on Residual Stresses. Vol. 347-3. 2000. 609-614. Abstract
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Prudencio, M., A. Pereira, P. Tavares, S. Besson, I. Cabrito, K. Brown, B. Samyn, B. Devreese, J. VanBeeumen, F. Rusnak, G. Fauque, J. Moura, M. Tegoni, C. Cambillau, and I. Moura. "{Purification, characterization, and preliminary crystallographic study of copper-containing nitrous oxide reductase from Pseudomonas nautica 617}." Biochemistry. 39 (2000): 3899-3907.
1999
Allain, Ronan, Philippe Taquet, Bernard Battail, Jean Dejax, Philippe Richir, Monette Veran, Franck Limon-Duparcmeur, R. Vacant, O. Mateus, Phouvong Sayarath, Bounxou Khenthavong, and Sitha Phouyavong. "Un nouveau genre de dinosaure sauropode de la formation des Gres superieurs (Aptien-Albien) du Laos." Comptes Rendus de l'Academie des Sciences - Series IIA - Earth and Planetary Science. 329 (1999): 609-616. Abstractallain_taquet_battail_dejax_richir_mateus_et_al_1999_un_nouveau_genre_de_dinosaure_sauropode_de_la_formation_des_gres_superieurs_aptien-albien_du_laos.pdfWebsite

The partly-articulated postcranial remains of two sauropod skeletons recently found in Tang Vay (Savannakhet Province, Laos) are assigned to the species Tangvayosaurus hoffeti (nov. gen., nov. sp.). The derived characters present in the new material confirm the presence of titanosaurs in South East Asia at the end of the Early Cretaceous, but are not consistent with its placement within Titanosaurus genus as first done by Hoffet in 1942. All of the material relative to this species is therefore referred to a new genus: Tangvayosaurus. Tangvayosaurus and the Thai genus Phuwiangosaurus have strong affinities and are considered as primitive titanosaurs.

Allain, Ronan, Philippe Taquet, Bernard Battail, Jean Dejax, Philippe Richir, Monette Véran, Franck Limon-Duparcmeur, Renaud Vacant, Octavio Mateus, Phouvong Sayarath, Bounxou Khenthavong, and Sitha Phouyavong. "Un nouveau genre de dinosaure sauropode de la formation des Grès supérieurs (Aptien-Albien) du Laos." Comptes Rendus de l{\textquotesingle}Académie des Sciences - Series {IIA} - Earth and Planetary Science. 329 (1999): 609-616. AbstractWebsite
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Kuhlmann, Stefan, Patries Boekholt, Luke Georghiou, Ken Guy, Jean-Alain Heraud, Philippe Laredo, Tarmo Lemola, Denis Loveridge, Terttu Luukkonen, António Moniz, Wolfgang Polt, and Ri Improving Distributed Intelligence in Complex Innovation Systems. University Library of Munich, Germany, 1999. Abstract

Science and technology (S&T) are considered to be a central source, or at least a basic medium, of societal and industrial innovation, while innovation is conceived to basically feed the regeneration of our welfare. The suppliers of S&T in Europe as well as the users of their „products“, are confronted with a number of challenges today. We want to stress here that it was not the primary goal of our Advanced Science & Technology Policy Planning (ASTPP) Network to come up with proposals how the strategic character of European S&T policies could be strengthened. The ASTPP-network instead focuses on one aspect: the provision of strategic intelligence necessary to identify and develop strategic choices. The underlying hypothesis is that the existing body of experiences with technology foresight, technology assessment and S/T policy evaluation provides a basis for the development of an advanced S&T policy „planning“ approach by trying to enhance, interlink or even integrate the growing, but still dispersed experience in these three areas of intelligence. By „intelligent“ we mean that the inter-relatedness of S&T, industrial efforts, societal needs and political interventions becomes more transparent so that interactive collaboration between them will be facilitated.

Bonaparte, J. F., and O. Mateus. "A new diplodocid, Dinheirosaurus lourinhanensis gen. et sp. nov., from the Late Jurassic beds of Portugal." Rev. Mus. Argent. Cienc. Nat. 5 (1999): 13-29. Abstractbonapartemateus1999_sauropod_dinheirosaurus_portugal.pdfWebsite

Presacral vertebrae of a new Diplodocidae from the Late Jurassic Amoreira-Porto Novo Formation of Lourinhã, Portugal are described and figured. Dinheirosaurus lourinhanensis gen. et sp. is diagnosed by well developed accessory articulations derived from the hyposphene, exposed in lateral view; and by the smaller dorsoventral length of the lower section of the neural arch. It is considered that the organization of the dorsal neural arch of Dinheirosaurus is more derived than in Diplodocus, except in the dorsoventral development of the lower portion of it, which is higher (more derived) in the latter. Possibly the isolated geography of Portugal in the Late Jurassic gave rise to the distinct characters of this new genus.

Amaral, Paula, and Pedro Barahona. "About infeasibility in the constraints of a linear model." Ricerca Operativa. 92 (1999): 49-67. Abstract
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Amaral, P., and P. Barahona. "After infeasibility in linear programming." Proceedings of CP-AI-OR99 workshop on integration of AI and OR techniques in Constraint Programming for Combinatorial Optimization problems. Vol. 1. Universit, 1999. Abstract

This work is focused on the correction of Infeasible Linear problems. Its motivation is not difficult to understand if one thinks on the complexity of model building in large real problems. The inconsistency can arise in the definition of the model due, for instance, to structural or data type errors. The identification of conflict sets of constraints is very useful but might not be enough to overcome the problem, since the implementation of a solution may require the definition of a new feasible model. We present a short review on known procedures for the diagnosis of these problems. The approach we propose is based on the correction of (potentially) all the parameters of the model restrictions. We present a pure algebraic methodology based on the Singular Value Decomposition of a matrix. This method is quite rigid in the changes of the matrix coefficients changes, so we give insights on a heuristic based approach in order to attain more flexibility.

Prudencio, M., AS Pereira, P. Tavares, S. Besson, and I. Moura. "Copper-containing nitrous oxide reductase from Pseudomonas nautica: spectroscopic and redox properties." Journal of Inorganic Biochemistry. 74 (1999): 267. AbstractWebsite
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Bonaparte, J. F., and O. Mateus. "A new diplodocid, Dinheirosaurus lourinhanensis gen. et sp. nov., from the Late Jurassic beds of Portugal." Revista del Museo Argentino de Ciencias Naturales. 5 (1999): 13-29. Abstract
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Bonaparte, J. F., and O. Mateus. "A new diplodocid, Dinheirosaurus lourinhanensis gen. et sp. nov., from the Late Jurassic beds of Portugal." Revista del Museo Argentino de Ciencias Naturales. 5 (1999): 13-29. Abstract
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Allain, R., P. Taquet, B. Battail, J. Dejax, P. Richir, M. Veran, F. Limon-Duparcmeur, and et al. "A new genus of sauropod dinosaur from the Gres superieurs formation (Aptian-Albian) of Laos." Comptes Rendus de l'Academie des Sciences Series IIA Earth and Planetary Science. 329 (1999): 609-616. Abstract
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Allain, R., P. Taquet, B. Battail, J. Dejax, P. Richir, M. Véran, F. Limon-Duparcmeur, and et al. "A new genus of sauropod dinosaur from the Gres superieurs formation (Aptian-Albian) of Laos | Un nouveau genre de dinosaure sauropode de la formation des Gres superieurs (Aptien-Albien) du Laos." Comptes Rendus de l'Academie de Sciences - Serie IIa: Sciences de la Terre et des Planetes. 329 (1999): 609-616. Abstract
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