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2005
Gomes, Lu\'ıs, João Paulo Barros, and Anikó Costa. "Structuring Mechanisms in Petri Net Models: From specification to FPGA based implementations." Design of embedded control systems. 2005. 153-166. Abstract
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Santos-Silva, T., J. Trincao, AL Carvalho, C. Bonifacio, F. Auchere, I. Moura, JJG Moura, and MJ Romao. "Superoxide reductase from the syphilis spirochete Treponema pallidum: crystallization and structure determination using soft X-rays." Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 61 (2005): 967-970. Abstract
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Santos-Silva, T., J. Trincão, AL Carvalho, C. Bonifácio, F. Auchère, I. Moura, JJG Moura, and MJ Romão. "Superoxide reductase from the syphilis spirochete Treponema pallidum: Crystallization and structure determination using soft X-rays." Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 61 (2005): 967-970. Abstract
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Santos, J. P., F. Parente, S. Boucard, and J. P. Desclaux. "X-ray energies of circular transitions and electron screening in kaonic atoms." Physical Review A. 71 (2005): 032501 EP -. AbstractWebsite

The QED contribution to the energies of the circular (n, = n–1), 2n13, transitions have been calculated for several kaonic atoms throughout the periodic table, using the current world-average kaon mass. Calculations were done in the framework of the Klein-Gordon equation, with finite nuclear size, finite particle size, and all-order Uelhing vacuum polarization corrections, as well as Källén and Sabry and Wichmann and Kroll corrections. These energy level values are compared with other computed values. The circular transition energies are compared with available measured and theoretical transition energies. Electron screening is evaluated using a Dirac-Fock model for the electronic part of the wave function. The effect of electronic wave-function correlation is evaluated.Exo

Santos, J. P., F. Parente, S. Boucard, P. Indelicato, and J. P. Desclaux. "X-ray energies of circular transitions and electrons screening in kaonic atoms." Physical Review A. 71 (2005): 032501. AbstractWebsite
The QED contribution to the energies of the circular (n, = n–1), 2n13, transitions have been calculated for several kaonic atoms throughout the periodic table, using the current world-average kaon mass. Calculations were done in the framework of the Klein-Gordon equation, with finite nuclear size, finite particle size, and all-order Uelhing vacuum polarization corrections, as well as Källén and Sabry and Wichmann and Kroll corrections. These energy level values are compared with other computed values. The circular transition energies are compared with available measured and theoretical transition energies. Electron screening is evaluated using a Dirac-Fock model for the electronic part of the wave function. The effect of electronic wave-function correlation is evaluated.
Santos, J. P., F. Parente, S. Boucard, and P. Indelicato. "X-ray energies of circular transitions in sigmonic atoms." Nuclear Instruments and Methods in Physics Research Section B. 235 (2005): 206. AbstractWebsite
Energies of the circular (n, ℓ = n − 1) 1 less-than-or-equals, slant n less-than-or-equals, slant 20 levels have been calculated for hydrogenlike sigmonic atoms with 1 less-than-or-equals, slant Z less-than-or-equals, slant 92, using the current world average sigma mass, as well as the electronic shift in Σ− + Ne e− + nucleus systems, where Ne stands for the number of electrons. The electronic influence on sigmonic orbitals has also been investigated through the computation of the hyperfine structure and the anomalous Σ− magnetic moment effects in sigmonic Be 2p states.
Santos, J. P., F. Parente, S. Boucard, and P. Indelicato. "X-ray energies of circular transitions in sigmonic atoms." Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms. 235 (2005): 206-209. AbstractWebsite

Energies of the circular (n, ℓ = n − 1) 1 less-than-or-equals, slant n less-than-or-equals, slant 20 levels have been calculated for hydrogenlike sigmonic atoms with 1 less-than-or-equals, slant Z less-than-or-equals, slant 92, using the current world average sigma mass, as well as the electronic shift in Σ− + Ne e− + nucleus systems, where Ne stands for the number of electrons. The electronic influence on sigmonic orbitals has also been investigated through the computation of the hyperfine structure and the anomalous Σ− magnetic moment effects in sigmonic Be 2p states.Exo

Fortunato, E., P. Barquinha, A. Pimentel, A. Goncalves, A. Marques, L. Pereira, and R. Martins Zinc oxide thin-film transistors. Eds. N. H. Nickel, and E. Terukov. Vol. 194. Zinc Oxide - A Material for Micro- and Optoelectronic Applications, 194., 2005. AbstractWebsite
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Barbosa, Joaquim, Silva C. Ribeiro, O. M. N. D. Teodoro, and Caetano Monteiro. "{Evaluation of Y2O3 as front layer of ceramic crucibles for vaccum induction melting of tial based alloys}." Proceedings of 2005 TMS Anual Meeting. San Francisco: TMS, 2005. 1-12. Abstract

During the last decades titanium alloys were found to be valuable engineering materials for many different applications. Formerly used in critical applications like aerospace, aeronautic and military equipment, where the factor cost is not relevant, titanium alloys are finding now new and different markets. However, the development of such new markets will depend on an effective cost reduction of titanium parts, in order to achieve a selling cost suitable with its application in consumer goods. A possible solution to decrease production costs might be the use of traditional casting techniques to produce near net shape functional parts. During the last years, the authors have developed extensive research work on this field, and a new technique both for melting and moulding, using ceramic multi-layered crucibles and investment casting shells was developed. This paper presents some of the results obtained during that research work: Ti-48Al alloy were melted and cooled inside CaO, MgO and Y O stabilized ZrO crucibles with inside layer of Y O . The chemical composition, hardness and microstructure at the metal-crucible interface, studied by secondary ion mass spectrometry, SEM/EDS and XRS are presented. On a second step, the same alloy was melted on the same crucibles, and poured into graphite moulds, and the crucibles wall was characterized by SEM/EDS and XRS.

Liu, Hua Rong, Pedro T. Gomes, Sandra I. Costa, Teresa M. Duarte, R. Branquinho, Anabela C. Fernandes, James C. W. Chien, R. P. Singh, and Maria M. Marques. "{Highly active new $\alpha$-diimine nickel catalyst for the polymerization of $\alpha$-olefins}." Journal of Organometallic Chemistry. 690 (2005): 1314-1323. Abstract

A new silylated $\alpha$-diimine ligand, bis[N,N′-(4-tert-butyl- diphenylsilyl-2,6-diisopropylphenyl)imino]acenaphthene 3, and its corresponding Ni(II) complex, {\{}bis[N,N′-(4-tert-butyl-diphenylsilyl-2,6- diisopropylphenyl)imino]acenaphthene{\}}dibromonickel 4, have been synthesized and characterized. The crystal structures of 3 and 4 were determined by X-ray crystallography. In the solid state, complex 4 is a dimer with two bridging Br ligands linking the two nickel centers, which have square pyramidal geometries. Complex 4, activated either by diethylaluminum chloride (DEAC) or methylaluminoxane (MAO) produces very active catalyst systems for the polymerization of ethylene and moderately active for the polymerization of propylene. The activity values are in the order of magnitude of 107 g PE (mol Ni [E] h)-1 for the polymerization of ethylene and of 105 g PP (mol Ni [P] h)-1 for the polymerization of propylene. NMR analysis shows that branched polyethylenes (PE) are obtained at room or higher temperatures and almost linear PE is obtained at 0°C with 4/DEAC. © 2004 Elsevier B.V. All rights reserved.

Pereira, L., P. Barquinha, E. Fortunato, and R. Martins. "{Influence of metal induced crystallization parameters on the performance of polycrystalline silicon thin film transistors}." Thin Solid Films. 487 (2005): 102-106. AbstractWebsite
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Fortunato, E, Barquinha, P, Pimentel, and A. "{Zinc oxide thin-film transistors}." 194 (2005): 225-238. AbstractWebsite
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2004
Fortunato, E. M. C., P. M. C. Barquinha, A. C. M. B. G. Pimentel, A. M. F. Goncalves, A. J. S. Marques, R. F. P. Martins, and L. M. N. Pereira. "Wide-bandgap high-mobility ZnO thin-film transistors produced at room temperature." Applied Physics Letters. 85 (2004): 2541-2543. AbstractWebsite
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Bursakov, SA, OY Gavel, G. Di Rocco, J. Lampreia, J. Calvete, AS Pereira, JJG Moura, and I. Moura. "Antagonists Mo and Cu in a heterometallic cluster present on a novel protein (orange protein) isolated from Desulfovibrio gigas." JOURNAL OF INORGANIC BIOCHEMISTRY. 98 (2004): 833-840. Abstract
An orange-coloured protein (ORP) isolated from Desulfovibrio gigas, a sulphate reducer, has been previously shown by extended X-ray absorption fine structure (EXAFS) to contain a novel mixed-metal sulphide cluster of the type {[}S2MoS2CuS2MoS2] {[}J. Am. Chem. Soc. 122 (2000) 8321]. We report here the purification and the biochemical/spectroscopic characterisation of this novel protein. ORP is a soluble monomeric protein (11.8 kDa). The cluster is non-covalently bound to the polypeptide chain. The presence of a MoS42- moiety in the structure of the cofactor contributes with a quite characteristic UV-Vis spectra, exhibiting an orange colour, with intense absorption peaks at 480 and 338 nm. Pure ORP reveals an Abs(480)/Abs(338) ratio of 0.535. The gene sequence coding for ORP as well as the amino acid sequence was determined. The putative biological function of ORP is discussed. (C) 2003 Elsevier Inc. All rights reserved.
Barquinha, P., L. Pereira, H. Águas, E. Fortunato, and R. Martins. "{Influence of the deposition conditions on the properties of titanium oxide produced by r.f. magnetron sputtering}." Materials Science in Semiconductor Processing. 7 (2004): 243-247. AbstractWebsite
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Pinho, Fernando F. S., Manuel F. C. BAIÃO, and Válter J. G. Lúcio. "Estudo experimental sobre técnicas de consolidação e reforço de paredes de alvenaria de pedra ordinária." 2º Congresso Nacional da Construção. FEUP, Porto 2004.
Barquinha, P., L. Pereira, H. Aguas, E. Fortunato, and R. Martins. "Influence of the deposition conditions on the properties of titanium oxide produced by r.f. magnetron sputtering." Materials Science in Semiconductor Processing. 7 (2004): 243-247. AbstractWebsite
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Damásio, {Carlos Augusto Isaac Piló Viegas}, {José Júlio Alves} Alferes, {Pedro Manuel Corrêa Calvente de} Barahona, and {Francisco Moura Castro Ascensão E. de de} Azevedo. "Deductive Diagnosis of Digital Circuits." Artificial Intelligence Applications and Innovations. 2004. 155-165. Abstract
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Damásio, {Carlos Augusto Isaac Piló Viegas}, {José Júlio Alves} Alferes, {Pedro Manuel Corrêa Calvente de} Barahona, and {Francisco Moura Castro Ascensão E. de de} Azevedo. "Deductive Diagnosis of Digital Circuits." IFIP World Computer Congress. 2004. 155-166. Abstract
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Lapa, N., R. Barbosa, B. Mendes, and J. F. Santos Oliveira. "Chemical and ecotoxicological long-term behaviour of new materials for quarry back-filling and underground constructions." International RILEM Conference on the Use of Recycled Materials in Building and Structures. Eds. E. Vázquez, Ch. F. Hendriks, and G. M. T. Janssen. Barcelona: RILEM, 2004. 373-382. Abstractpaper_186_final_version.pdf

The main aim of the Valomat project was the development of new materials for quarry back-filling and underground constructions, based on the reuse of bottom ashes from MSWI. Bottom ashes were collected in six incineration plants of Europe. Some of them were selected for the development of new materials.
One task of this project comprised the study of the long-term behavior of new materials, under simulated conditions of environmental exposure. Three different scenarios were studied. For each scenario, a pilot plant was constructed and the new materials were studied under laboratory conditions or natural weather. The long-term behavior of these materials was assessed through the characterization of chemical and ecotoxicological properties of the leachates.
The chemical contamination and the ecotoxicological levels of the leachates were relatively low, although different levels had been determined for the three different scenarios. The immersion in dechlorinated tap water (scenario S1) had shown the highest emission levels of chlorides, sulphates, DOC, and Al, especially for the materials B2/1 and B2/2. The lowest ecotoxicological and chemical levels were determined in the scenario in which the materials were buried in a sieved soil.

B. Tekinerdogan, A. Moreira, J. Araújo, and P. Clements Early Aspects: Aspect-Oriented Requirements Engineering and Architecture Design. University of Twente, 2004. Abstract

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G. Blair, L. Blair, A. Rashid, A. Moreira, J. Araújo, and R. Chitchyan. "Engineering Aspect-Oriented Systems." Aspect-Oriented Software Development . Robert E. Filman, Tzilla Elrad, Siobhan Clarke, Mehmet Aksit ed. Addison-Wesley, 2004. Abstract

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Ortigueira, M. D., and AG Batista. "A Fractional Linear System View of the Fractional Brownian Motion." Nonlinear Dynamics.38 (2004): 295-303.
Lapa, N., J. Morais, C. Borges, B. Mendes, and J. F. Santos Oliveira. "An integrated approach to assess the biodegradability of a wastewater containing chromium by using chemical and biological methods." Global Symposium on Recycling, Waste Treatment and Clean Technology, REWAS’2004. Eds. I. Gaballah, B. Mishra, R. Solozabal, and M. Tanaka. San Sebastián: TMS/INASMET, 2004. 1351-1362. Abstractrewas04_lapa_et_al.pdf

The Water Company of the North Alentejo (Águas do Norte Alentejano) (Portugal) has decided to implement a treatment plant to treat an urban wastewater with a significant influence of tannery effluents. The design of the wastewater treatment plant was attributed to a consortium coordinated by Sisaqua Company. Since the levels of the biodegradability and toxicity of the wastewater to be treated were unknown, Sisaqua Company asked the New University of Lisboa to develop and execute a monitoring plan to define the chemical composition and the levels of the biodegradability and toxicity of the wastewater.
A composite sampling procedure of the wastewater was performed during a daily working cycle of the tanneries. The composite sample was characterized for 19 chemical parameters. Five of these parameters were total Cr, Cr (VI), Zn, Cu and Al, which were determined in the dissolved and suspended fractions. The composite sample was also submitted to a biological test to assess its biodegradability degree. This assay was performed according to the methodology indicated in the test 301E of OECD [1], taking into account the amendment of 1992. A respirometric assay was carried out, to assess the toxic effect of the composite sample on the biological populations involved in the biological stabilization of organic compounds. This assay followed the “Sapromat” methodology developed by Brabander and Vandeputte [2]. Finally, the composite sample was submitted to a coagulation-flocculation process according to the methodologies proposed by Eckenfelder [3, 4] and Pereira [5]. The supernatants were characterized for the same chemical and biological parameters as it was described for the composite sample.
It was possible to conclude that the high levels of Cr present in the composite wastewater were mainly in the trivalent oxidation state. Since this oxidation state is less toxic for biological populations than the Cr (VI) and this metal was mainly in the suspended fraction, it was possible to obtain a biodegradability of the organic compounds quite similar to those observed for domestic wastewaters. The toxicity determined by the “Sapromat” method was slightly higher than those determined for domestic wastewaters. Nevertheless, this toxicity did not affect significantly the wastewater biodegradability. The Cr (III) was easily removed by a chemical coagulation-flocculation process.