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2011
Filanovsky, I. M., M. Reja, and L. B. Oliveira. "New non-gyrator type active inductors with applications." Circuits and Systems (MWSCAS), 2011 IEEE 54th International Midwest Symposium on. IEEE, 2011. 1-4. Abstract
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Folgosa, F., C. M. Cordas, J. A. Santos, AS Pereira, JJG Moura, P. Tavares, and I. Moura. "New spectroscopic and electrochemical insights on a class I superoxide reductase: evidence for an intramolecular electron-transfer pathway." Biochemical Journal. 438 (2011): 485-494. AbstractWebsite

SORs (superoxide reductases) are enzymes involved in bacterial resistance to reactive oxygen species, catalysing the reduction of superoxide anions to hydrogen peroxide. So far three structural classes have been identified. Class I enzymes have two ironcentre-containing domains. Most studies have focused on the catalytic iron site (centre II), yet the role of centre I is poorly understood. The possible roles of this iron site were approached by an integrated study using both classical and fast kinetic measurements, as well as direct electrochemistry. A new heterometallic form of the protein with a zinc-substituted centre I, maintaining the iron active-site centre II, was obtained, resulting in a stable derivative useful for comparison with the native all-iron from. Second-order rate constants for the electron transfer between reduced rubredoxin and the different SOR forms were determined to be 2.8 x 10(7) M(-1) . s(-1) and 1.3 x 10(6) M(-1) . s(-1) for SOR(Fe(IIII)-Fe(II)) and for SOR(Fe(IIII)-Fe(III)) forms respectively, and 3.2 x 10(6) M(-1) s(-1) for the SOR(Zn(II)-Fe(III)) form. The results obtained seem to indicate that centre I transfers electrons from the putative physiological donor rubredoxin to the catalytic active iron site (intramolecular process). In addition, electrochemical results show that conformational changes are associated with the redox state of centre I, which may enable a faster catalytic response towards superoxide anion. The apparent rate constants calculated for the SOR-mediated electron transfer also support this observation.

Pina, João, Mário Ventim Neves, Alfredo Álvarez, and Amadeu Leão Rodrigues. "Numerical Design Methodology for an All Superconducting Linear Synchronous Motor." Technological Innovation for Sustainability. Vol. 349. IFIP Advances in Information and Communication Technology, 349. 2011. 553-562. Abstract

One potential advantage of the application of superconducting materials in electrical machines is the possibility to build lighter and compact devices by removing iron. These machines find applications, e.g., in systems where cryogenics is already available, or in naturally cryogenic environments. The design of motors with high temperature superconductors (HTS) presents issues unconsidered in classical machines, besides considerations on cryogenics, such as HTS brittleness or mechanical restrictions. Moreover, HTS' electromagnetic properties also degrade due to flux density components, which arise if there is no iron to guide magnetic flux. Several aspects must thus be considered in the design stage, as applications may turn less attractive or even unfeasible. In this paper these issues are detailed, and a numerical methodology for the design of an all superconducting (without iron or conventional conductors) linear synchronous motor is presented.

Coelho, Carlos A., and Filipe J. Marques. "On the Exact, Asymptotic and Near-exact Distributions for the Likelihood Ratio Statistics to Test Equality of Several Exponential Distributions." AIP Conference Proceedings. Vol. 1389. AIP, 2011. 1471-1474. Abstract
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Domingues, T., J. R. Fernandes, and L. B. Oliveira. "Oscillator noise budget for ADC systems." Mixed Design of Integrated Circuits and Systems (MIXDES), 2011 Proceedings of the 18th International Conference. IEEE, 2011. 358-361. Abstract
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Aelenei, Laura, Roberto Lollini, Helder Gon, Daniel Aelenei, Masa Noguchi, Michael Donn, and Fran Garde. "Passive cooling approaches in net-zero energy solar buildings: lessons learned from demonstration buildings." CISBAT 2011 - CleanTec for Sustainable Buildings. 978-2-8399-0906-8. 2011. Abstract
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Antão, Armando N., T. Santana, M. Vicente da Silva, and N. M. C. Guerra. "Passive earth-pressure coefficients by upper-bound numerical limit analysis." Canadian Geotechnical Journal. 48 (2011): 767-780. Abstract

A three-dimensional (3D) numerical implementation of the limit analysis upper-bound theorem is used to determine passive horizontal earth-pressure coefficients. An extension technique allowing determination of the 3D passive earth pressures for any width-to-height ratios greater than 7 is presented. The horizontal passive earth-pressure coefficients are presented and compared with solutions published previously. Results of the ratio between the 3D and two-dimensional horizontal passive earth-pressure coefficients are shown and found to be almost independent of the soil-to-wall friction ratio. A simple equation is proposed for calculating this passive earth-pressure ratio.

Moutinho, Filipe, Lu{\'ı}s Gomes, Paulo E. S. Barbosa, João Paulo Barros, Franklin Ramalho, Jorge Figueiredo, Anikó Costa, and André Monteiro. "Petri Net Based Specification and Verification of Globally-Asynchronous-Locally-Synchronous System." Technological Innovation for Sustainability - Second {IFIP} {WG} 5.5/SOCOLNET Doctoral Conference on Computing, Electrical and Industrial Systems, DoCEIS 2011, Costa de Caparica, Portugal, February 21-23, 2011. Proceedings. 2011. 237-245. Abstract
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Pinheiro, C., and M. M. Chaves. "Photosynthesis and drought: can we make metabolic connections from available data?" Journal of Experimental Botany. 62 (2011): 869-882. AbstractWebsite

Photosynthesis is one of the key processes to be affected by water deficits, via decreased CO2 diffusion to the chloroplast and metabolic constraints. The relative impact of those limitations varies with the intensity of the stress, the occurrence (or not) of superimposed stresses, and the species we are dealing with. Total plant carbon uptake is further reduced due to the concomitant or even earlier inhibition of growth. Leaf carbohydrate status, altered directly by water deficits or indirectly (via decreased growth), acts as a metabolic signal although its role is not totally clear. Other relevant signals acting under water deficits comprise: abscisic acid (ABA), with an impact on stomatal aperture and the regulation at the transcription level of a large number of genes related to plant stress response; other hormones that act either concurrently (brassinosteroids, jasmonates, and salycilic acid) or antagonistically (auxin, cytokinin, or ethylene) with ABA; and redox control of the energy balance of photosynthetic cells deprived of CO2 by stomatal closure. In an attempt to systematize current knowledge on the complex network of interactions and regulation of photosynthesis in plants subjected to water deficits, a meta-analysis has been performed covering > 450 papers published in the last 15 years. This analysis shows the interplay of sugars, reactive oxygen species (ROS), and hormones with photosynthetic responses to drought, involving many metabolic events. However, more significantly it highlights (i) how fragmented and often non-comparable the results are and (ii) how hard it is to relate molecular events to plant physiological status, namely photosynthetic activity, and to stress intensity. Indeed, the same data set usually does not integrate these different levels of analysis. Considering these limitations, it was hard to find a general trend, particularly concerning molecular responses to drought, with the exception of the genes ABI1 and ABI3. These genes, irrespective of the stress type (acute versus chronic) and intensity, show a similar response to water shortage in the two plant systems analysed (Arabidopsis and barley). Both are associated with ABA-mediated metabolic responses to stress and the regulation of stomatal aperture. Under drought, ABI1 transcription is up-regulated while ABI3 is usually down-regulated. Recently ABI3 has been hypothesized to be essential for successful drought recovery.

Pinheiro, C., and M. M. Chaves. "Photosynthesis and drought: can we make metabolic connections from available data?" Journal of Experimental Botany. 62 (2011): 869-882. AbstractWebsite
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Capodicasa, Cristina, Paola Chiani, Carla Bromuro, Flavia De Bernardis, Marcello Catellani, Angelina S. Palma, Yan Liu, Ten Feizi, Antonio Cassone, Eugenio Benvenuto, and Antonella Torosantucci. "Plant production of anti-beta-glucan antibodies for immunotherapy of fungal infections in humans." Plant Biotechnology Journal. 9 (2011): 776-787. Abstract
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Silva, L.B.a, Veigas Doria Costa Inácio Martins Fortunato Baptista B. b G. b. "Portable optoelectronic biosensing platform for identification of mycobacteria from the Mycobacterium tuberculosis complex." Biosensors and Bioelectronics. 26 (2011): 2012-2017. AbstractWebsite

In this paper we report on the fabrication and performance of a portable and low cost optoelectronic platform integrating a double color tuned light emitting diode as light source, an amorphous/nanocrystalline silicon photodetector with a flat spectral response in the wavelength range from 520. nm to 630. nm and integrated electronic for signal acquisition and conditioning constituted by current to voltage converter, a filter and an amplification stage, followed by an analog to digital converter, with appropriate software for full automation to minimize human error. Incorporation of the double color tuned light emitting diode provides for a simple yet innovative solution to signal acquisition independently from the light intensity and/or solution concentration, while considerably decreasing production costs. Detection based on Au-nanoprobes constitutes the biorecognition step and allowed identification of specific sequences of Mycobacterium tuberculosis complex, namely Mycobacterium bovis and M. tuberculosis in biological samples. © 2010 Elsevier B.V.

Valtchev, Stanimir. "Pre-Certification of HSUN\textregistered Module According To IEC 62108." 26th European Photovoltaic Solar Energy Conference and Exhibition (PVSEC). 2011. Abstract
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Alagador, D., M. J. Martins, J. O. Cerdeira, M. Cabeza, and M. B. Araújo. "A probability-based approach to match species with reserves when data are at different resolutions." Biological Conservation. 144 (2011): 811-820. Abstract
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Sousa, A. M. R., J. Xavier, J. J. L. Morais, V. M. J. Filipe, and M. Vaz. "Processing discontinuous displacement fields by a spatio-temporal derivative technique." Optics and Lasers in Engineering. 49 (2011): 1402-1412. Abstract
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Santos, J. P., M. C. Martins, A. M. Costa, J. P. Marques, P. Indelicato, and F. Parente. "Production and decay of chlorine ion excited species in an electron cyclotron resonance ion source plasma." Physica Scripta. T144 (2011): 014005. AbstractWebsite

The most important processes for the creation of chlorine ion excited states from the ground configurations of Cl 10+ to Cl 15+ ions in an electron cyclotron resonance ion source, leading to the emission of K x-ray lines, were studied. Theoretical values for inner-shell excitation and ionization cross-sections, including double KL and triple KLL ionization, transition probabilities and energies for the de-excitation processes, were calculated in the framework of the multi-configuration Dirac–Fock method. With reasonable assumptions about the electron energy distribution, a theoretical Kα x-ray spectrum was obtained, which was then compared with recent experimental data.

Santos, J. P., M. C. Martins, A. M. Costa, J. P. Marques, P. Indelicato, and F. Parente. "Production and decay of chlorine ion excited species in an electron cyclotron resonance ion source plasma." Physica Scripta. T144 (2011): 014005. AbstractWebsite

The most important processes for the creation of chlorine ion excited states from the ground configurations of Cl 10+ to Cl 15+ ions in an electron cyclotron resonance ion source, leading to the emission of K x-ray lines, were studied. Theoretical values for inner-shell excitation and ionization cross-sections, including double KL and triple KLL ionization, transition probabilities and energies for the de-excitation processes, were calculated in the framework of the multi-configuration Dirac–Fock method. With reasonable assumptions about the electron energy distribution, a theoretical Kα x-ray spectrum was obtained, which was then compared with recent experimental data.

Wang, J.a b, Li Sallet Rego Martins Fortunato M. a V. c. "Properties of P-doped ZnO films RF-sputtered at different substrate temperature." Hongwai yu Jiguang Gongcheng/Infrared and Laser Engineering. 40 (2011): 1490-1494. AbstractWebsite

In order to study the properties of P-doped ZnO films deposited at low temperature substrates, P-doped ZnO films were RF-sputtered on sapphire substrates in the range from RT to 350°C. XRD spectra indicated the growth of the crystallites along the strongest <001> orientation. Further ZnO (002) peak became the weakest when the film was sputtered at 250°C. AFM pictures showed that the surface morphology varied with the deposition temperature. The sample RMS increased with the increase of substrate temperature. XPS spectra showed a clear broad P 2p peak at about 134 eV. Further the film composition varied with the substrate temperature. The average visible transmittance calculated in the wavelength ranging 400-600 nm was more than 60%. The optical band gap calculated from the absorption coefficient was about 3.2 eV. The Hall measurements confirm the n-type conductivity of the films. The carrier concentration in the films decreases with the increase of substrate temperature. The study is helpful for understanding the properties of P-doped ZnO films sputtered at lower substrate temperature and achieving p type ZnO films at lower temperature.

Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278. AbstractWebsite
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Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278. AbstractWebsite
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Palma, L. B., F. V. Coito, and P. S. Gil. "Real-time detection of oscillations in control loops." Power Engineering, Energy and Electrical Drives (POWERENG), 2011 International Conference on. IEEE, 2011. 1-6. Abstract
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Palma, L., F. Coito, and P. Gil. "Real-Time Detection of Oscillations in Control Loops." IEEE International Conference on Power Engineering, Energy and Electrical Drives. n/a 2011. Abstract
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Branquinho, R.a b, Veigas Pinto Martins Fortunato Baptista B. c J. V. "Real-time monitoring of PCR amplification of proto-oncogene c-MYC using a Ta2O5 electrolyte-insulator-semiconductor sensor." Biosensors and Bioelectronics. 28 (2011): 44-49. AbstractWebsite

We present a new approach for real-time monitoring of PCR amplification of a specific sequence from the human c-MYC proto-oncogene using a Ta 2O 5 electrolyte-insulator-semiconductor (EIS) sensor. The response of the fabricated EIS sensor to cycle DNA amplification was evaluated and compared to standard SYBR-green fluorescence incorporation, showing it was possible to detect DNA concentration variations with 30mV/μM sensitivity. The sensor's response was then optimized to follow in real-time the PCR amplification of c-MYC sequence from a genomic DNA sample attaining an amplification profile comparable to that of a standard real-time PCR. Owing to the small size, ease of fabrication and low-cost, the developed Ta 2O 5 sensor may be incorporated onto a microfluidic device and then used for real-time PCR. Our approach may circumvent the practical and economical obstacles posed by current platforms that require an external fluorescence detector difficult to miniaturize and incorporate into a lab-on-chip system. © 2011 Elsevier B.V.

Pereira, Vasco, Jorge Sá Silva, Alberto Cardoso, P. Gil, P. Furtado, R. M. Silva, J. Cecílio, A. Santos, A. Gomes, Edmundo Monteiro, J. d O, and R. Eiras. "Redes de Sensores sem Fios com Desempenho Controlado – Projecto FP7 GINSENG." Ingenium (Revista da Ordem dos Engenheiros) (2011): n/a. Abstract
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