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2016
Cardoso, Pedro, Pedro Amaro, Jose Paulo Santos, Joaquim T. de Assis, and Maria Luisa Carvalho. "Determination of Nickel and Manganese Contaminants in Pharmaceutical Iron Supplements using Energy Dispersive X-ray Fluorescence." Applied Spectroscopy (2016). AbstractWebsite

In this study, we investigate the capability of energy dispersive X-ray fluorescence (EDXF) spectrometry in a triaxial geometry apparatus as a fast and nondestructive determination method of both dominant and contaminant elements in pharmaceutical iron supplements. The following iron supplements brands with their respective active ingredients were analyzed: Neutrofer fólico (iron gylcinate), Anemifer (iron(II) sulfate monohydrate), Noripurum (iron(III)-hydroxide polymaltose complex), Sulferbel (iron(II) sulfate monohydrate), and Combiron Fólico (carbonyl iron). Although we observe a good agreement between the iron content obtained by the present method and that indicated in the supplement's prescribed dose, we observe contamination by manganese and nickel of up to 180 μg and 36 μg, respectively. These contents correspond to 7.2% and 14.4% of the permitted daily exposure of manganese and nickel, respectively, for an average adult individual as determined by the European Medicine Agency (EMEA). The method was successfully validated against the concentrations of several certified reference materials of biological light matrices with similar concentrations of contaminants. Moreover, we also validated our method by comparing the concentrations with those obtained with the inductively coupled plasma-atomic emission technique.

Almeida, Bernardo F., Isabel Correia, and Francisco Saldanha-da-Gama. "Priority-based heuristics for the multi-skill resource constrained project scheduling problem." Expert Systems with Applications. 57 (2016): 91-103. AbstractWebsite
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Ito, Y., T. Tochio, H. Ohashi, M. Yamashita, S. Fukushima, M. Polasik, K. Słabkowska, Ł. Syrocki, E. Szymańska, J. Rzadkiewicz, P. Indelicato, J. P. Marques, M. C. Martins, J. P. Santos, and F. Parente. "Kα1,2x-ray linewidths, asymmetry indices, and [KM]shake probabilities in elements Ca to Ge and comparison with theory for Ca, Ti, and Ge." Physical Review A. 94 (2016): 042506-11. AbstractWebsite
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Marques, J. P., P. Indelicato, F. Parente, J. M. Sampaio, and J. P. Santos. "Ground-state Landé <span class="aps-inline-formula"><math xmlns="http://www.w3.org/1998/Math/MathML"><mi>g</mi></math></span> factors for selected ions along the boron isoelectronic sequence." Physical Review A. 94 (2016): 042504. AbstractWebsite

Land\'e $g$ factors for the fine-structure $1{s}^{2}2{s}^{2}2p\phantom{\rule{0.16em}{0ex}}^{2}P_{1/2}$ and $^{2}P_{3/2}$ levels in the boron isoelectronic sequence for selected $Z$ values have been calculated using the multiconfiguration Dirac-Fock method with both quantum-electrodynamic and electronic correlation corrections included. All-order Breit and vacuum polarization corrections were included in the calculation, with a fully optimized active set wave function. The results are compared with the available theoretical data, showing a very good agreement.

Marques, J. P., P. Indelicato, F. Parente, J. M. Sampaio, and J. P. Santos. "Ground-state Landé g factors for selected ions along the boron isoelectronic sequence." Physical Review A. 94 (2016): 042504. AbstractWebsite

Land\'e $g$ factors for the fine-structure $1{s}^{2}2{s}^{2}2p\phantom{\rule{0.16em}{0ex}}^{2}P_{1/2}$ and $^{2}P_{3/2}$ levels in the boron isoelectronic sequence for selected $Z$ values have been calculated using the multiconfiguration Dirac-Fock method with both quantum-electrodynamic and electronic correlation corrections included. All-order Breit and vacuum polarization corrections were included in the calculation, with a fully optimized active set wave function. The results are compared with the available theoretical data, showing a very good agreement.

Sampaio, J. M., T. I. Madeira, M. Guerra, F. Parente, P. Indelicato, J. P. Santos, and J. P. Marques. "Relativistic calculations of K-, L- and M-shell X-ray production cross-sections by electron impact for Ne, Ar, Kr, Xe, Rn and Uuo." Journal of Quantitative Spectroscopy and Radiative Transfer. 182 (2016): 87-93. AbstractWebsite

Journal of Quantitative Spectroscopy and Radiative Transfer, 182 + (2016) 87-93. doi:10.1016/j.jqsrt.2016.05.012

Branquinho, Rita, Ana Santa, Emanuel Carlos, Daniela Salgueiro, Pedro Barquinha, Rodrigo Martins, and Elvira Fortunato. "{Solution Combustion Synthesis: Applications in Oxide Electronics}." Developments in Combustion Technology. Eds. Kyprianidis G. Konstantinos, and Jan Skvaril. InTech, 2016. 397-417. Abstract

Oxide-based electronics have been well established as an alternative to silicon technology; however, typical processing requires complex, high-vacuum equipment, which is a major drawback, particularly when targeting low-cost applications. The possibility to deposit the materials by low-cost techniques such as inkjet printing has drawn tremendous interest in solution processible materials for electronic applications; however, high processing temperatures still required. To overcome this issue, solution combustion synthesis has been recently pursued. Taking advantage of the exothermic nature of the reaction as a source of energy for localized heating, the precursor solutions can be converted into oxides at lower process temperatures. Theoretically, this can be applied to any metal ions to produce the desired oxide, opening unlimited possibilities to materials' composition and combinations. Solution combustion synthesis has been applied for the production of semiconductor thin films based on ZnO, In2O3, SnO2 and combinations of these oxides, and also for high $ąppa$ dielectrics (Al2O3). All of which are required for numerous electronic devices and applications such as fully oxide-based thin-film transistors (TFTs). The properties of produced thin films are highly dependent on the precursor solution characteristics; hence, the influence of several processing parameters; organic fuel, solvent and annealing temperature was studied. Although precursor solution degradation/oxide formation mechanisms are not yet fully understood, particularly for thin films, we demonstrate that high-performance devices are obtained with combustion solution-based metal oxide thin films. The results clearly show that solution combustion synthesis is becoming one of the most promising methods for low-temperature flexible electronics.

Lorenz, M., et al. "{The 2016 oxide electronic materials and oxide interfaces roadmap}." Journal of Physics D: Applied Physics. 49 (2016): 433001. AbstractWebsite

Oxide electronic materials provide a plethora of possible applications and offer ample opportunity for scientists to probe into some of the exciting and intriguing phenomena exhibited by oxide systems and oxide interfaces. In addition to the already diverse spectrum of properties, the nanoscale form of oxides provides a new dimension of hitherto unknown phenomena due to the increased surface-to-volume ratio. Oxide electronic materials are becoming increasingly important in a wide range of applications including transparent electronics, optoelectronics, magnetoelectronics, photonics, spintronics, thermoelectrics, piezoelectrics, power harvesting, hydrogen storage and environmental waste management. Synthesis and fabrication of these materials, as well as processing into particular device structures to suit a specific application is still a challenge. Further, characterization of these materials to understand the tunability of their properties and the novel properties that evolve due to their nanostructured nature is another facet of the challenge. The research related to the oxide electronic field is at an impressionable stage, and this has motivated us to contribute with a roadmap on 'oxide electronic materials and oxide interfaces'. This roadmap envisages the potential applications of oxide materials in cutting edge technologies and focuses on the necessary advances required to implement these materials, including both conventional and novel techniques for the synthesis, characterization, processing and fabrication of nanostructured oxides and oxide-based devices. The contents of this roadmap will highlight the functional and correlated properties of oxides in bulk, nano, thin film, multilayer and heterostructure forms, as well as the theoretical considerations behind both present and future applications in many technologically important areas as pointed out by Venkatesan. The contributions in this roadmap span several thematic groups which are represented by the following authors: novel field effect transistors and bipolar devices by Fortunato, Grundmann, Boschker, Rao, and Rogers; energy conversion and saving by Zaban, Weidenkaff, and Murakami; new opportunities of photonics by Fompeyrine, and Zuniga-Perez; multiferroic materials including novel phenomena by Ramesh, Spaldin, Mertig, Lorenz, Srinivasan, and Prellier; and concepts for topological oxide electronics by Kawasaki, Pentcheva, and Gegenwart. Finally, Miletto Granozio presents the European action 'towards oxide-based electronics' which develops an oxide electronics roadmap with emphasis on future nonvolatile memories and the required technologies. In summary, we do hope that this oxide roadmap appears as an interesting up-to-date snapshot on one of the most exciting and active areas of solid state physics, materials science, and chemistry, which even after many years of very successful development shows in short intervals novel insights and achievements.

Rahangdale, H. V., D. Mitra, P. K. Das, S. De, M. Guerra, J. P. Santos, and S. Saha. "Spectroscopic investigations of L-shell ionization in heavy elements by electron impact." Journal of Quantitative Spectroscopy and Radiative Transfer. 174 (2016): 79-87. AbstractWebsite

Journal of Quantitative Spectroscopy and Radiative Transfer, 174 + (2016) 79-87. doi:10.1016/j.jqsrt.2016.01.026

Amaro, Pedro, Filippo Fratini, Laleh Safari, Jorge Machado, Mauro Guerra, Paul Indelicato, and Jose Paulo Santos. "Relativistic evaluation of the two-photon decay of the metastable 1s22s2p 3P0 state in berylliumlike ions with an effective-potential model." Physical Review A. 93 (2016): 032502-8. AbstractWebsite

The two-photon $1{s}^{2}2s2p\phantom{\rule{0.16em}{0ex}}{}^{3}{P}_{0}\ensuremath{\rightarrow}1{s}^{2}{s}^{2}\phantom{\rule{0.16em}{0ex}}{}^{1}{S}_{0}$ transition in berylliumlike ions is investigated theoretically within a fully relativistic framework and a second-order perturbation theory. We focus our analysis on how electron correlation, as well as the negative-energy spectrum, can affect the forbidden $E1M1$ decay rate. For this purpose, we include the electronic correlation via an effective local potential and within a single-configuration-state model. Due to its experimental interest, evaluations of decay rates are performed for berylliumlike xenon and uranium. We find that the negative-energy contribution can be neglected at the present level of accuracy in the evaluation of the decay rate. On the other hand, if contributions of electronic correlation are not carefully taken into account, it may change the lifetime of the metastable state by up to 20%. By performing a fully relativistic $jj$-coupling calculation, we find a decrease of the decay rate by two orders of magnitude compared to nonrelativistic $LS$-coupling calculations, for the selected heavy ions.

Amaro, Pedro, Filippo Fratini, Laleh Safari, Jorge Machado, Mauro Guerra, Paul Indelicato, and José Paulo Santos. "{Relativistic evaluation of the two-photon decay of the metastable $1s^2\,2s\,2p\,^3P_0$ state in berylliumlike ions with an effective-potential model}." Physical Review A. 93 (2016): 032502. AbstractWebsite
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Sampaio, J. M., M. Guerra, F. Parente, T. I. Madeira, P. Indelicato, J. P. Santos, and J. P. Marques. "Calculations of photo-induced X-ray production cross-sections in the energy range 1–150 keV and average fluorescence yields for Zn, Cd and Hg." Atomic Data and Nuclear Data Tables. 111-112 (2016): 67-86. AbstractWebsite

Atomic Data and Nuclear Data Tables, 111-112 (2016) 67-86. doi:10.1016/j.adt.2016.02.001

Ramos, I., I. M. Pataco, M. P. Mourinho, F. Lidon, F. Reboredo, M. F. Pessoa, M. L. Carvalho, J. P. Santos, and M. Guerra. "Elemental mapping of biofortified wheat grains using micro X-ray fluorescence." Spectrochimica Acta Part B: Atomic Spectroscopy. 120 (2016): 30-36. AbstractWebsite

Spectrochimica Acta Part B: Atomic Spectroscopy, 120 (2016) 30-36. doi:10.1016/j.sab.2016.03.014

Röder, Marko, et al. "{Coulomb dissociation of $^{20,21}$N}." Physical Review C. 93 (2016): 065807. AbstractWebsite
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Bahubalindruni, Pydi Ganga, Asal Kiazadeh, Allegra Sacchetti, Jorge Martins, Ana Rovisco, Vitor Grade Tavares, Rodrigo Martins, Elvira Fortunato, and Pedro Barquinha. "{Influence of Channel Length Scaling on InGaZnO TFTs Characteristics: Unity Current-Gain Cutoff Frequency, Intrinsic Voltage-Gain, and On-Resistance}." Journal of Display Technology. 12 (2016): 515-518. AbstractWebsite
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Barrocas, B., S. Sério, A. Rovisco, Y. Nunes, and Melo M. E. Jorge. "{Removal of rhodamine 6G dye contaminant by visible light driven immobilized Ca1⿿Ln MnO3 (Ln = Sm, Ho; 0.1 ⿤x⿤ 0.4) photocatalysts}." Applied Surface Science. 360 (2016): 798-806. AbstractWebsite

Visible-light-driven Ca1-xLnxMnO3 (Ln=Sm, Ho; 0.1≤x≤0.4) films were grown by RF- magnetron sputtering onto fused silica substrates. The effects of Ca2+ substitution for Ho3+ or Sm3+ in Ca1-xLnxMnO3 on the structural, morphological and photocatalytic properties for Rhodamine 6G dye degradation under visible light irradiation were investigated. XRD showed a pure typical perovskite phase for all the prepared films, except for Ca0.9Ho0.1MnO3 and a decrease of the crystallite size with the increase of the amount of ion substituted. SEM and AFM revealed that the films surface is dense, with low roughness. UV-vis spectroscopy indicated for the two series band gaps in the range of 1.6 - 2.8eV, being lower for the films containing holmium. The results showed that some Ca1-xHoxMnO3 and Ca1-xSmxMnO3 films present higher photocatalytic activity for Rh6G degradation in comparison with TiO2 films and for the same x value the Ho-films exhibited higher photocatalytic activity. For both films series the maximal degradation rate was obtained for x=0.2; above this content the degradation percentage exhibits a decreasing trend with the increase of Ho or Sm substitution, except for x=0.4 in the case of Ho system, which is observed again an increase in the degradation rate. The Rh6G photocatalytic degradation followed a pseudo first-order reaction kinetics. XRD and SEM of the used photocatalysts evidenced high photochemical stability.

Nobrega, C. S., I. H. Saraiva, C. Carreira, B. Devreese, M. Matzapetakis, and S. R. Pauleta. "The solution structure of the soluble form of the lipid-modified azurin from Neisseria gonorrhoeae, the electron donor of cytochrome c peroxidase." Biochim Biophys Acta. 1857 (2016): 169-76. AbstractWebsite

Neisseria gonorrhoeae colonizes the genitourinary track, and in these environments, especially in the female host, the bacteria are subjected to low levels of oxygen, and reactive oxygen and nitrosyl species. Here, the biochemical characterization of N. gonorrhoeae Laz is presented, as well as, the solution structure of its soluble domain determined by NMR. N. gonorrhoeae Laz is a type 1 copper protein of the azurin-family based on its spectroscopic properties and structure, with a redox potential of 277+/-5 mV, at pH7.0, that behaves as a monomer in solution. The globular Laz soluble domain adopts the Greek-key motif, with the copper center located at one end of the beta-barrel coordinated by Gly48, His49, Cys113, His118 and Met122, in a distorted trigonal geometry. The edge of the His118 imidazole ring is water exposed, in a surface that is proposed to be involved in the interaction with its redox partners. The heterologously expressed Laz was shown to be a competent electron donor to N. gonorrhoeae cytochrome c peroxidase. This is an evidence for its involvement in the mechanism of protection against hydrogen peroxide generated by neighboring lactobacilli in the host environment.

Brás, Joana L. A., Benedita A. Pinheiro, Kate Cameron, Fiona Cuskin, Aldino Viegas, Shabir Najmudin, Pedro Bule, Virginia M. R. Pires, Maria João Romão, Edward A. Bayer, Holly L. Spencer, Steven Smith, Harry J. Gilbert, Victor D. Alves, Ana Luísa Carvalho, and Carlos M. G. A. Fontes. "Diverse specificity of cellulosome attachment to the bacterial cell surface." Scientific Reports. 6 (2016): 38292. AbstractWebsite

During the course of evolution, the cellulosome, one of Nature's most intricate multi-enzyme complexes, has been continuously fine-tuned to efficiently deconstruct recalcitrant carbohydrates. To facilitate the uptake of released sugars, anaerobic bacteria use highly ordered protein-protein interactions to recruit these nanomachines to the cell surface. Dockerin modules located within a non-catalytic macromolecular scaffold, whose primary role is to assemble cellulosomal enzymatic subunits, bind cohesin modules of cell envelope proteins, thereby anchoring the cellulosome onto the bacterial cell. Here we have elucidated the unique molecular mechanisms used by anaerobic bacteria for cellulosome cellular attachment. The structure and biochemical analysis of five cohesin-dockerin complexes revealed that cell surface dockerins contain two cohesin-binding interfaces, which can present different or identical specificities. In contrast to the current static model, we propose that dockerins utilize multivalent modes of cohesin recognition to recruit cellulosomes to the cell surface, a mechanism that maximises substrate access while facilitating complex assembly.

Guerra, M., C. Ferreira, M. L. Carvalho, J. P. Santos, and S. Pessanha. "Distribution of toxic elements in teeth treated with amalgam using μ-energy dispersive X-ray fluorescence." Spectrochimica Acta Part B: Atomic Spectroscopy. 122 (2016): 114-117. AbstractWebsite

Spectrochimica Acta Part B: Atomic Spectroscopy, 122 (2016) 114-117. doi:10.1016/j.sab.2016.06.006

Guimarães, D., A. A. Dias, M. Carvalho, M. L. Carvalho, J. P. Santos, F. R. Henriques, F. Curate, and S. Pessanha. "Quantitative determinations and imaging in different structures of buried human bones from the XVIII-XIXth centuries by energy dispersive X-ray fluorescence – Postmortem evaluation." Talanta. 155 (2016): 107-115. AbstractWebsite

Talanta, 155 + (2016) 107-115. doi:10.1016/j.talanta.2016.04.028

Cabanelas, P., J. Cruz, M. Fonseca, A. Henriques, F. Louren{\c c}o, H. Lu{\'ıs, J. Machado, Pires J. Ribeiro, A. M. Sánchez-Ben{\'ıtez, P. Teubig, P. Velho, M. Zarza-Moreno, D. Galaviz, and A. P. Jesus. "{Cross sections for proton induced high energy $\gamma$-ray emission (PIGE) in reaction F(p,$\gamma$)O at incident proton energies between 1.5 and 4 MeV}." Nuclear Inst. and Methods in Physics Research, B. 381 (2016): 110-113. AbstractWebsite
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Lopes, A., A. Gabriel, J. Machado, P. Ribeiro, R. Gomes, Jo M. P. o Coelho, C. O. Silva, C. P. Reis, J. P. Santos, and P. Vieira. "Multiple Source Phototherapy in Breast Cancer: A Viability Study." 9th International Conference on Biomedical Electronics and Devices. SCITEPRESS - Science and and Technology Publications, 2016. 247-250. Abstract
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Neca, A. J., R. Soares, M. S. Carepo, and S. R. Pauleta. "Resonance assignment of DVU2108 that is part of the Orange Protein complex in Desulfovibrio vulgaris Hildenborough." Biomol NMR Assign. 10 (2016): 117-20. AbstractWebsite

We report the 94 % assignment of DVU2108, a protein belonging to the Orange Protein family, that in Desulfovibrio vulgaris Hildenborough forms a protein complex named the Orange Protein complex. This complex has been shown to be implicated in the cell division of this organism. DVU2108 is a conserved protein in anaerobic microorganisms and in Desulfovibrio gigas the homologous protein was isolated with a novel Mo-Cu cluster non-covalently attached to the polypeptide chain. However, the heterologously produced DVU2108 did not contain any bound metal. These assignments provide the means to characterize the interaction of DVU2108 with the proteins that form the Orange Protein complex using NMR methods.

Silva, Teresa, Francisco Costa, Judite Fernandes, Rogério Calvo, and Octávio Mateus The use of a portable X-ray fluorescence analyzer in the reconstitution of dinosaur fossils. European Conference on X-Ray Spectrometry (EXRS), 2016. Abstract

Portable X-ray fluorescence spectrometers (p-XRF) have been used in many fields of application/studies like art, archaeology, heavy metals in soil, rocks and ores characterization, and have been a powerful tool for a rapid non-destructive in-situ analysis, without any sample preparation required. This approach was applied in the present case, to distinguish the origin of the fossil bones of two dinosaur specimens from different localities that were accidentally put together in the museum a few years ago. Fossil bones with sedimentary matrix associated were stored together until today in the collection of Geological Museum (Lisbon) and regarded as one single specimen. One set of bones is part of the holotype MG 5787 of the ankylosaur Dracopelta zbyszweskii, which was discovered at Praia do Sul, and described in 1980, while the other, is an undescribed half skeleton of dacentrurine stegosaur, unearthed in the 1960’s at Atouguia da Baleia, near Peniche (both in the coast of central Portugal, distanced about 100 km from each other). Since both specimens are highly valuable for paleontology, a study was developed with the aim of separating and reconstituting the two specimens. The handheld p-XRF (Genius 9000+7000 from Skyray Instrument) was directly used in the sedimentary matrix when it was separated from the bone, and the measure of the chemical content was performed in the intermediate layer between the surface and the bone, to avoid contaminations. Although the light elements could not be attained, because the analyzer is not equipped with the option of gas charging system, the spectra obtained showed differences mainly in the ratio K/Ca, allowing distinguishing the provenance of the bones (Atouguia or Praia do Sul). These results were compared with chemical analysis obtained with XRF laboratorial equipment and complemented by the mineralogical study through X-ray diffraction (XRD) of the sediments where the bones fossilized. The difference observed in the mineralogical constitution of the sedimentary matrix from the two localities (mainly quartz, calcite, feldspars and micas with variable content) explains the variation in the values found for the ratio K/Ca (<0.5 for Atouguia and >>1 for Praia do Sul). The data obtained will be presented and discussed focusing on the importance of using a portable X-ray fluorescence analyzer applied to the reconstitution of dinosaur fossils that proved to be very useful in the present case.