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2013
Moniz, António B. "Human-Robot Interaction in Industrial Working Environments: Results from a Start-up Project." Technikfolgenabschätzung – Theorie und Praxis. 22.1 (2013): 65-69. Abstracttatup131_moni13a.pdfWebsite

The social dimension of worker-robot interac-tion in industry is becoming a decisive aspect of robotics development. Many problems and difficulties of robotics research are not only related to technical issues but framed by social aspects. Human-robot interaction (HRI) as a specific research field of robotics tackles this issue. The debate on social involvement in HRI design of a few decades ago must be re-opened. A start-up project was initiated in 2012 at Karlsruhe Institute of Technology (KIT) to define a new research field and establish a conceptual framework on HRI. It was related to recent developments in the manufacturing industry and professional service robotics. The aim was to cooperate with other research teams to establish an expert network in this field. Special focus was placed on the design of work organisation models and issues of robotics technology design for worker (or operator) and robot interaction. In the current paper we present the most important conclusions from these research activities.

Bundaleski, N., J. Trigueiro, A. G. Silva, A. M. C. Moutinho, and O. M. N. D. Teodoro. "Influence of the patch field on work function measurements based on the secondary electron emission." JOURNAL OF APPLIED PHYSICS. 113.183720 (2013): 1-11.2013_influence_of_the_patch_field_on_work_function_measurements_based_on_the_secondary_electron_emission.pdf
Bundaleski, Nenad, Stefano Caporali, Sergey P. Chenakin, Augusto M. C. Moutinho, Orlando M. N. D. Teodoro, and Alexander Tolstogouzov. "Ion-induced fragmentation of imidazolium ionic liquids : TOF-SIMS study." International Journal of Mass Spectrometry. 353 (2013): 19-25.2013_ion-induced_fragmentation_of_imidazolium_ionic_liquids.pdf
João, Costa, Ortigueira Manuel, and Batista Arnaldo. "K-means Clustering for Sleep Spindles Classification." International Journal of Information Technology & Computer Science (2091-1610). 10 (2013): 77-85.
Oliveira, João Pedro, Francisco Braz Fernandes, and Rosa M. Miranda Laser welded NiTi. Correlation between mechanical cycling behavior and microstructure. Saarbrucken: LAP - Lambert Academic Publishing, 2013.
Strganac, Christopher, Louis L. Jacobs, Kurt M. Ferguson, Michael J. Polcyn, Octávio Mateus, Anne S. Schulp, and Maria Luísa Morais Late Cretaceous marine reptiles and cooling at the South Atlantic coast inferred through stable oxygen isotopes of Inoceramus from the Namibe Basin, Angola. Geological Society of America Abstracts with Programs. Vol. 45, No. 7, p.0., 2013.
Soares, João, João M. Lourenço, and Nuno Preguiça. "MacroDB: Scaling Database Engines on Multicores." Euro-Par 2013 Parallel Processing. Eds. Felix Wolf, Bernd Mohr, and Dieter Mey. Vol. 8097. Lecture Notes in Computer Science, 8097. Springer Berlin Heidelberg, 2013. 607-619. Abstracteuropar2013-soares.pdf

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Polcyn, M. J., LL Jacobs, O. Mateus, AS Schulp, C. Strganac, R. Araújo, JF Graf, D. Vineyard, and TS Myers A marine vertebrate assemblage from the Campanian-Maastrichtian boundary at Bentiaba, Angola. Geological Society of America Abstracts with Programs. Vol. 45, No. 7, p.0., 2013.polcyn_et_al_2013_abstract__a_marine_vertebrate_assemblage_from_the_campanian-maastrichtian_boundary_at_bentiaba_angola_2013__gsa_27-30_october_2013.pdf
Martins, N., and M. Rebelo. "A meshfree method for elasticity problems with interfaces." Applied Mathematics and Computation. 219.22 (2013): 10732-10745 .
Marcelo, Filipa, Catarina Dias, Paulo J. Madeira, Tiago Jorge, Helena M. Florêncio, Javier F. Canada, Eurico J. Cabrita, Jésus Jiménez-Barbero, and Amelia P. Rauter. "Molecular Recognition of Rosmarinic Acid from Salvia sclareoides Extracts by Acetylcholinesterase: A New Binding Site Detected by NMR Spectroscopy." Chemistry: A European Journal. 19 (2013): 6641-6649. AbstractWebsite

Acetylcholinesterase (AChE) inhibition is one of the most currently available therapies for the management of Alzheimer’s disease (AD) symptoms. In this context, NMR spectroscopy binding studies were accomplished to explain the inhibition of AChE activity by Salvia sclareoides extracts. HPLC-MS analyses of the acetone, butanol and water extracts eluted with methanol and acidified water showed that rosmarinic acid is present in all the studied samples and is a major constituent of butanol and water extracts. Moreover, luteolin 4′-O-glucoside, luteolin 3′,7-di-O-glucoside and luteolin 7-O-(6′′-O-acetylglucoside) were identified by MS2 and MS3 data acquired during the LC-MSn runs. Quantification of rosmarinic acid by HPLC with diode-array detection (DAD) showed that the butanol extract is the richest one in this component (134 μg mg−1 extract). Saturation transfer difference (STD) NMR spectroscopy binding experiments of S. sclareoides crude extracts in the presence of AChE in buffer solution determined rosmarinic acid as the only explicit binder for AChE. Furthermore, the binding epitope and the AChE-bound conformation of rosmarinic acid were further elucidated by STD and transferred NOE effect (trNOESY) experiments. As a control, NMR spectroscopy binding experiments were also carried out with pure rosmarinic acid, thus confirming the specific interaction and inhibition of this compound against AChE. The binding site of AChE for rosmarinic acid was also investigated by STD-based competition binding experiments using Donepezil, a drug currently used to treat AD, as a reference. These competition experiments demonstrated that rosmarinic acid does not compete with Donepezil for the same binding site. A 3D model of the molecular complex has been proposed. Therefore, the combination of the NMR spectroscopy based data with molecular modelling has permitted us to detect a new binding site in AChE, which could be used for future drug development.

Pimenta, Jorge, Aldino Viegas, João Sardinha, Ivo C. Martins, Eurico J. Cabrita, Carlos M. G. A. Fontes, Jose A. M. Prates, and Rosa M. L. N. Pereira. "NMR Solution Structure and SRP54M predicted interaction of the N-Terminal sequence (1-30) of the ovine Doppel protein." Peptides. 49 (2013): 32-40. AbstractWebsite

Prion protein (PrPC) biosynthesis involves a multi-step process that includes translation and post-translational modifications. While PrP has been widely investigated, for the homolog Doppel (Dpl), limited knowledge is available. In this study, we focused on a vital step of eukaryotic protein biosynthesis: targeting by the signal recognition particle (SRP). Taking the ovine Dpl (OvDpl(1-30)) peptide as a template, we studied its behavior in two different hydrophobic environments using CD and NMR spectroscopy. In both trifluoroethanol (TFE) and dihexanoyl-sn-glycero-3-phosphatidylcholine (DHPC), the OvDpl(1-30) peptide revealed to fold in an alpha-helical conformation with a well-defined central region extending from residue Cys8 until Ser22. The NMR structure was subsequently included in a computational docking complex with the conserved M-domain of SRP54 protein (SRP54M), and further compared with the N-terminal structures of mouse Dpl and bovine PrPC proteins. This allowed the determination of (i) common predicted N-terminal/SRP54M polar contacts (Asp331, Gln335, Glu365 and Lys432) and (ii) different N–C orientations between prion and Dpl peptides at the SRP54M hydrophobic groove, that are in agreement with each peptide electrostatic potential. Together, these findings provide new insights into the biosynthesis of prion-like proteins. Besides they also show the role of protein conformational switches in signalization toward the endoplasmic membrane, a key event of major significance in the cell cycle. They are thus of general applicability to the study of the biological function of prion-like as well as other proteins.

N.J.Ford, M. L. Morgado, and M. Rebelo Nonpolynomial approximation of solutions to delay fractional differential equations. Proceedings of the 13th International Conference on Computational and Mathematical Methods in Science and Engineering, CMMSE2013. Almería , Spain.: ISBN:978-84-616-2723-3, 2013.
Ford, Neville J., Luísa M. Morgado, and Magda Rebelo. "Nonpolynomial collocation approximation of solutions to fractional differential equation." Fractional Calculus and Applied Analysis. 16.4 (2013): 874-891.
Ferreira, Adelino, Fábio Simões, Rui Micaelo, and Cássio Paiva Novo método de dimensionamento de pavimentos da AASHTO – aplicação a Portugal. 17.º Congreso Ibero-Latinoamericano del Asfalto. Antigua, Guatemala, 2013.
Ferreira, Adelino, Fábio Simões, Rui Micaelo, and Cássio Paiva Novo método de dimensionamento de pavimentos rodoviários da AASHTO – Aplicação a Portugal. 19ª Reunião de Pavimentação Urbana. Cuiabá, Brasil, 2013.
Moniz, António Brandão Organizational concepts and interaction between humans and robots in industrial environments. IROS 2013 "DRHE 2013 Dependable Robots in Human Environments". Tokyo: AIST - National Institute of Advanced Industrial Science and Technology, 2013. Abstract

This paper is discussing the intuitive interaction with robotic systems and the conceptualisation connected with known organisational problems. In particular, the focus will be on the manufacturing industry with respect to its social dimension. One of the aims is to identify relevant research questions about the possibility of development of safer robot systems in closer human-machine intuitive interaction systems at the manufacturing shop-floor level. We try to contribute to minimize the cognitive and perceptual workload for robot operators in complex working systems. In particular that will be highly relevant when more different robots with different roles and produced by different companies or designers are to be used in the manufacturing industry to a larger extent. The social sciences approach to such technology assessment is of high relevance to understand the dimensions of the intuitive interaction concept.

Paulos, Margarida, and António Brandão Moniz. "Os trabalhadores do conhecimento num setor tradicional: O caso dos designers do vestuário." Sociologia Problemas e Práticas. 2013.72 (2013): 103-122.
Mannion, Philip D., Paul Upchurch, Rosie N. Barnes, and Octávio Mateus. "Osteology of the Late Jurassic Portuguese sauropod dinosaur Lusotitan atalaiensis (Macronaria) and the evolutionary history of basal titanosauriforms." Zoological Journal of the Linnean Society. 168 (2013): 98-206. Abstractmannion_et_al_2013_sauropod_lusotitan_portugal.pdfWebsite

Titanosauriforms represent a diverse and globally distributed clade of neosauropod dinosaurs, but their inter-relationships remain poorly understood. Here we redescribe Lusotitan atalaiensis from the Late Jurassic Lourinhã Formation of Portugal, a taxon previously referred to Brachiosaurus. The lectotype includes cervical, dorsal, and caudal vertebrae, and elements from the forelimb, hindlimb, and pelvic girdle. Lusotitan is a valid taxon and can be diagnosed by six autapomorphies, including the presence of elongate postzygapophyses that project well beyond the posterior margin of the neural arch in anterior-to-middle caudal vertebrae. A new phylogenetic analysis, focused on elucidating the evolutionary relationships of basal titanosauriforms, is presented, comprising 63 taxa scored for 279 characters. Many of these characters are heavily revised or novel to our study, and a number of ingroup taxa have never previously been incorporated into a phylogenetic analysis. We treated quantitative characters as discrete and continuous data in two parallel analyses, and explored the effect of implied weighting. Although we recovered monophyletic brachiosaurid and somphospondylan sister clades within Titanosauriformes, their compositions were affected by alternative treatments of quantitative data and, especially, by the weighting of such data. This suggests that the treatment of quantitative data is important and the wrong decisions might lead to incorrect tree topologies. In particular, the diversity of Titanosauria was greatly increased by the use of implied weights. Our results support the generic separation of the contemporaneous taxa Brachiosaurus, Giraffatitan, and Lusotitan, with the latter recovered as either a brachiosaurid or the sister taxon to Titanosauriformes. Although Janenschia was recovered as a basal macronarian, outside Titanosauria, the sympatric Australodocus provides body fossil evidence for the pre-Cretaceous origin of titanosaurs. We recovered evidence for a sauropod with close affinities to the Chinese taxon Mamenchisaurus in the Late Jurassic Tendaguru beds of Africa, and present new information demonstrating the wider distribution of caudal pneumaticity within Titanosauria. The earliest known titanosauriform body fossils are from the late Oxfordian (Late Jurassic), although trackway evidence indicates a Middle Jurassic origin. Diversity increased throughout the Late Jurassic, and titanosauriforms did not undergo a severe extinction across the Jurassic/Cretaceous boundary, in contrast to diplodocids and non-neosauropods. Titanosauriform diversity increased in the Barremian and Aptian–Albian as a result of radiations of derived somphospondylans and lithostrotians, respectively, but there was a severe drop (up to 40%) in species numbers at, or near, the Albian/Cenomanian boundary, representing a faunal turnover whereby basal titanosauriforms were replaced by derived titanosaurs, although this transition occurred in a spatiotemporally staggered fashion.

Salminen, J., J. Dinis, and O. Mateus Preliminary magnetostratigraphy for Jurassic/Cretaceous transition in Porto da Calada, Portugal. In: Veikkolainen, T., Suhonen, K., Näränen, J., Kauristie, K., and Kaasalainen, S. (eds.). XXVI Geofysiikan päivät,. May 21-22 2013 in Helsinki, 2013.salminen.johanna_gfp2013_portugal_preliminary_magnetostratigraphy_for_jurassic_cretaceous_transition_in.pdf
Figueiredo, Angelo Miguel, João Sardinha, Geoffrey R. Moore, and Eurico J. Cabrita. "Protein destabilisation in ionic liquids: the role of preferential interactions in denaturation." Phys. Chem. Chem. Phys..15 (2013): 19632-19643. AbstractWebsite

The preferential binding of anions and cations in aqueous solutions of the ionic liquids (ILs) 1-butyl- 3-methylimidazolium ([C4mim]+) and 1-ethyl-3-methylimidazolium ([C2mim]+) chloride and dicyanamide (dca-) with the small alpha-helical protein Im7 was investigated using a combination of differential scanning calorimetry, NMR spectroscopy and molecular dynamics (MD) simulations. Our results show that direct ion interactions are crucial to understand the effects of ILs on the stability of proteins and that an anion effect is dominant. We show that the binding of weakly hydrated anions to positively charged or polar residues leads to the partial dehydration of the backbone groups, and is critical to control stability, explaining why dca- is more denaturing than Cl-. Direct cation–protein interactions also mediate stability; cation size and hydrophobicity are relevant to account for destabilisation as shown by the effect of [C4mim]+ compared to [C2mim]+. The specificity in the interaction of IL ions with protein residues established by weak favourable interactions is confirmed by NMR chemical shift perturbation, amide hydrogen exchange data and MD simulations. Differences in specificity are due to the balance of interaction established between ion pairs and ion-solvent that determine the type of residues affected. When the interaction of both cation and anion with the protein is strong the net result is similar to a non-specific interaction, leading ultimately to unfolding. Since the nature of the ions is a determinant of the level of interaction with the protein towards denaturation or stabilisation, ILs offer a unique possibility to modulate protein stabilisation or even folding events.

Micael Inácio, António Ramos, Válter Lúcio, and Duarte Faria. "Punching of High Strength Concrete Flat Slabs - Experimental Investigation." fib symposium Tel Aviv 2013. Tel Aviv: fib, 2013. 377-380. Abstract

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Cunha, Jácome, João Paulo Fernandes, Jorge Mendes, Rui Pereira, and João Saraiva. "Querying Model-Driven Spreadsheets." Proceedings of the 2013 IEEE Symposium on Visual Languages and Human-Centric Computing. VLHCC '13. Washington, DC, USA: IEEE Computer Society, 2013. 83-86. Abstractvlhcc2013-query.pdf

Spreadsheets are being used with many different purposes that range from toy applications to complete information systems. In any of these cases, they are often used as data repositories that can grow significantly. As the amount of data grows, it also becomes more difficult to extract concrete information out of them. This paper focuses on the problem of spreadsheet querying. In particular, we propose an expressive and composable technique where intuitive queries can be defined. Our approach builds on a model-driven spreadsheet development environment, and queries are expressed referencing entities in the model of a spreadsheet instead of in its actual data. Finally, the system that we have implemented relies on Google's query function for spreadsheets.

Belo, Orlando, Jácome Cunha, João Paulo Fernandes, Jorge Mendes, Rui Pereira, and João Saraiva. "QuerySheet: A Bidirectional Query Environment for Model-Driven Spreadsheets." Proceedings of the 2013 IEEE Symposium on Visual Languages and Human-Centric Computing. VLHCC '13. Washington, DC, USA: IEEE Computer Society, 2013. 199-200. Abstractvlhcc2013-td.pdf

This paper presents a tool, named QUERYSHEET, to query spreadsheets. We defined a language to write the queries, which resembles SQL, the language to query databases. This allows to write queries which are more related to the spreadsheet content than with current approaches.

Liu, H., Â. Mestre, and Teresa Sousa. "Rainbow vertex k-connection in graphs." Discrete Applied Mathematics. 161.16-17 (2013): 2549-2555. Abstractrvck-preprint.pdf

Let k be a positive integer and G be a k-connected graph. An edge-coloured path is rainbow if its edges have distinct colours. The rainbow k-connection number of G, denoted by rc_k(G), is the minimum number of colours required to colour the edges of G so that any two vertices of G are connected by k internally vertex-disjoint rainbow paths. The function rc_k(G) was first introduced by Chartrand, Johns, McKeon, and Zhang in 2009, and has since attracted considerable interest. In this paper, we consider a version of the function rc_k(G) which involves vertex-colourings. A vertex-coloured path is vertex-rainbow if its internal vertices have distinct colours. The rainbow vertex k-connection number of G, denoted by rvc_k(G), is the minimum number of colours required to colour the vertices of G so that any two vertices of G are connected by k internally vertex-disjoint vertex-rainbow paths. We shall study the function rvc_k(G) when G is a cycle, a wheel, and a complete multipartite graph. We also construct graphs G where rc_k(G) is much larger than rvc_k(G) and vice versa so that we cannot in general bound one of rc_k(G) and rvc_k(G) in terms of the other.