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2012
Micaelo, Rui, André Santos, and Cátia Duarte Compaction and mixing temperatures of asphalt mixtures with modified bitumen. 5th Congress Eurasphalt & Eurobitume 2012. Istanbul, Turkey, 2012.
Martins, D., I. Catarino, J. Franco, L. Ribeiro, and G. Bonfait. "Controlled actuation of a Gas-Gap Heat Switch." ICEC 24. Fukuoka, Japan 2012. Abstract

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Mateus, O., M. J. Polcyn, LL Jacobs, R. Araújo, AS Schulp, J. Marinheiro, B. Pereira, and D. Vineyard Cretaceous amniotes from Angola: dinosaurs, pterosaurs, mosasaurs, plesiosaurs, and turtles. V Jornadas Internacionales sobre Paleontología de Dinosaurios y su Entorno. Salas de los Infantes, Burgos, 2012. Abstractmateus_et_al_2012_amniotes_from_angola_cretaceous_amniotes_from_angola_dinosaurs_pterosaurs_mosasaurs.pdf

Although rich in Cretaceous vertebrate fossils, prior to 2005 the amniote fossil record of Angola was poorly known. Two horizons and localities have yielded the majority of the vertebrate fossils collected thus far; the Turonian Itombe Formation of Iembe in Bengo Province and the Maastrichtian Mocuio Formation of Bentiaba in Namibe Province. Amniotes of the Mesozoic of Angola are currently restricted to the Cretaceous and include eucryptodire turtles, plesiosaurs, mosasaurs, pterosaurs, and dinosaurs. Recent collecting efforts have greatly expanded our knowledge of the amniote fauna of Angola and most of the taxa reported here were unknown prior to 2005.

Ferraz, Ricardo, Luís C. Branco, Isabel M. Marrucho, João M. M. Araújo, Luis Paulo N. Rebelo, Manuel Nunes da Ponte, Cristina Prudêncio, João Paulo Noronha, and Zeljko Petrovski. "Development of novel ionic liquids based on ampicillin." Med. Chem. Commun.. 3 (2012): 494.Development of Novel Ionic Liquids Based on Ampicillin.pdf
Queirós, Raquel B., J. P. Noronha, P. V. S. Marques, and Goreti M. F. Sales. "Emerging (bio)sensing Technology for Assessing and Monitoring Freshwater Contamination – Methods and Applications." Ecological Water Quality - Water Treatment and Reuse. InTech, 2012. 65-94.Emerging Bio Sensing Technology for Assessing and Monitoring Freshwater Contamination Methods and Applications.pdf
E. Piveta, A. Moreira, M. Pimenta, J. Araújo, P. Guerreiro, and T. Price. "An Empirical Study of Aspect-Oriented Metrics." Science of Computer Programming (2012). Abstract

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Afonso, J., D. Martins, I. Catarino, R. Patrício, A. Rocaboy, M. Linder, T. Tirolien, and G. Bonfait "Energy storage unit using cryogenic liquids for integration in cryocoolers". ICEC 24. Fukuoka, Japan, 2012.
Myers, TS, NJ Tabor, LL Jacobs, and O. Mateus. "Estimating soil pCO2 using paleosol carbonates: implications for the relationship between primary productivity and faunal richness in ancient terrestrial ecosystems." Paleobiology. 38.4 (2012): 585-604. Abstractmyers_et_al_2012_estimating_soil_paleosols_portugal.pdf

In this paper we present a method for estimating soil pCO2 in ancient environments using the measured carbon-isotope values of pedogenic carbonates and plant-derived organic matter. The validity of soil pCO2 estimates proves to be highly dependent on the organic δ13C values used in the calculations. Organic matter should be sourced from the same paleosol profiles as sampled carbonates to yield the most reliable estimates of soil pCO2. In order to demonstrate the potential use of soil pCO2 estimates in paleoecological and paleoenvironmental studies, we compare samples from three Upper Jurassic localities. Soil pCO2 estimates, interpreted as a qualitative indicator of primary paleoproductivity, are used to rank the Late Jurassic terrestrial environments represented by the Morrison Formation in western North America, the informally named Lourinhã formation in Western Europe, and the Stanleyville Group in Central Africa. Because modern terrestrial environments show a positive correlation between primary productivity and faunal richness, a similar relationship is expected in ancient ecosystems. When the relative paleoproductivity levels inferred for each study area are compared with estimates of dinosaur generic richness, a positive correlation emerges. Both the Morrison and Lourinhã formations have high inferred productivity levels and high estimated faunal richness. In contrast, the Stanleyville Group appears to have had low primary productivity and low faunal richness. Paleoclimatic data available for each study area indicate that both productivity and faunal richness are positively linked to water availability, as observed in modern terrestrial ecosystems.

Barišić, Ankica, Vasco Amaral, Miguel Goulão, and Bruno Barroca. "Evaluating the Usability of Domain-Specific Languages." Formal and Practical Aspects of Domain-Specific Languages: Recent Developments. Ed. Marjan Mernik. IGI Global, 2012. Abstract

We can regard Domain-Specific Languages (DSLs) as User Interfaces (UIs) because they bridge the gap
between the domain experts and the computation platforms. Usability of DSLs by domain experts is a key
factor for their successful adoption. The few reports supporting improvement claims are persuasive, but
mostly anecdotal. Systematic literature reviews show that evidences on the effects of the introduction of
DSLs are actually very scarce. In particular, the evaluation of usability is often skipped, relaxed, or at
least omitted from papers reporting the development of DSLs. The few exceptions mostly take place at
the end of the development process, when fixing problems is already too expensive. A systematic
approach, based on techniques for the experimental evaluation of UIs, should be used to assess suitability
of new DSLs. This chapter presents a general experimental evaluation model, tailored for DSLs’
experimental evaluation, and instantiates it in several DSL’s evaluation examples.

Tschopp, E., and O. Mateus. "Evidence for presence of clavicles and interclavicles in sauropod dinosaurs and its implications on the furcula-clavicle homology." Journal of Vertebrate Paleontology, Program and Abstracts, 2012, 184. ISSN 1937-2809 (2012): 184. Abstracttschopp__mateus_2012_interclavicles_clavicles_svp_2012_abstract.pdf

Clavicles and interclavicles are plesiomorphically present in Reptilia. However, several groups show reduction or even loss of these elements. Crocodylimorpha, e.g., lost the clavicles, whereas dinosaurs are generally interpreted to only preserve the clavicles, the theropod furcula representing an unique case of fused clavicles. In sauropods, reports of clavicles are relatively frequent in non-titanosauriforms. These elements are elongated, curved, and rather stout bones with a spatulate and a bifurcate end. However, they were always found as single bones, and differ from the relatively short and unbifurcated clavicles found articulated with the scapulae of basal sauropodomorphs.
Elements from the Howe Quarry (Late Jurassic; Wyoming, USA) shed new light on these interpretations. Besides the elongated, curved bones (herein named morphotype A), also pairs of symmetric, L-shaped bones were recovered (morphotype B), associated with diplodocid dorsal and cervical vertebrae. Elements resembling morphotype B - articulated between the scapulae - have recently been reported from a diplodocid found near Tensleep, Wyoming. Taphonomic evidence, as well as the fact that they were preserved in symmetrical pairs, therefore implies that morphotype B represents the true sauropod clavicles.
Contrary to earlier reports, morphotype A elements from the Howe Quarry, as well as of previously reported specimens show a symmetry plane following the long axis of the elements. It is thus possible that the morphotype A elements were single bones from the body midline. The only such element present in the pectoral girdle of tetrapods are the interclavicle and the furcula. Comparison with crocodilian and lacertiform interclavicles indicates that the bifurcate end of the sauropod elements might represent the reduced transverse processes of the anterior end, and the spatulate end would have covered the coracoids or sternal plates ventrally.
The presence of both clavicles and interclavicles in the pectoral girdle stiffens the anterior trunk, and enhances considerably its stability. Such an enforcement might have been needed in diplodocids due to the strong lateral forces induced to the fore-limbs by the posteriorly placed center of mass (due to shorter fore- than hind-limbs), as well as lateral movements of the enormously elongated necks and tails. The absence of clavicles and interclavicles in titanosauriforms coincides with the development of wide-gauge locomotion style.
The presence of interclavicles in sauropods supports the recently proposed homology of the furcula with the interclavicle, instead of representing fused clavicles. Interclavicles were thus not lost, but may have remained cartilaginous or have yet to be found in basal dinosauriforms.

Herrera, J., Rivera P. Salas, R. Vargas, I. Macia, R. Pinho, A. Garcia, J. Araújo, and K. Breitman An Exploraty Study of Aspect-Oriented Requirement Engineering Tools. 26º Simpósio Brasileiro de Engenharia de Software (SBES). Natal, Brazil: IEEE digital library, 2012.
Cunha, Jácome, João Paulo Fernandes, Jorge Mendes, and João Saraiva. "Extension and Implementation of ClassSheet Models." Proceedings of the 2012 IEEE Symposium on Visual Languages and Human-Centric Computing. VLHCC '12. Washington, DC, USA: IEEE Computer Society, 2012. 19-22. Abstractvlhcc12.pdf

n this paper we explore the use of models in the context of spreadsheet engineering. We review a successful spreadsheet modeling language, whose semantics we further extend. With this extension we bring spreadsheet models closer to the business models of spreadsheets themselves. An addon for a widely used spreadsheet system, providing bidirectional model-driven spreadsheet development, was also improved to include the proposed model extension.

Malheiro, A. "Finite derivation type for semilattices of semigroups." Semigroup Forum. 84 (2012): 515-526. AbstractWebsite

In this paper we investigate how the combinatorial property finite derivation type (FDT) is preserved in a semilattice of semigroups. We prove that if S=S[Y,S_α] is a semilattice of semigroups such that Y is finite and each S_α (α∈Y) has FDT, then S has FDT. As a consequence we can show that a strong semilattice of semigroups S[Y,S_α,λ_{α,β}] has FDT if and only if Y is finite and every semigroup S α (α∈Y) has FDT.

Mendes, Ana Sofia, Maria Amalia Botelho, Ana Luisa Papoila, João Viegas, Daniel Aelenei, Paixão, P. Paquete, Iolanda Caires, Susana Azevedo, Pedro Martins, J. Martins, C. Pedro, P. Neves, Nuno Neuparth, and João Teixeira. "Geria Project preliminary study on indoor air quality and health related quality of life in elderly care centers." CISE 2012, Conference. 2012. Abstract

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Guirgis, Bassem, Cláudia Sá e Cunha, Inês Gomes, Miguel Cavadas, Isabel Silva, Gonçalo Doria, Gregory Blatch, Pedro Baptista, Eulália Pereira, Hassan Azzazy, Maria Mota, Miguel Prudêncio, and Ricardo Franco. "Gold nanoparticle-based fluorescence immunoassay for malaria antigen detection." Analytical and Bioanalytical Chemistry. 402.3 (2012): 1019-1027.
Azzazy, Hassan M. E., M. H. Mansour Mai, M. Samir Tamer, and Ricardo Franco. "Gold nanoparticles in the clinical laboratory: principles of preparation and applications." Clinical Chemistry and Laboratory Medicine. 50.2 (2012): 193.
Estevão, Mónica S., Luísa C. R. Carvalho, Marisa Freitas, Ana Gomes, Aldino Viegas, João Manso, Stefan Erhadrt, Eurico J. Cabrita, and Maria Manuel B. Marques. "Indole based cyclooxygenase inhibitors: synthesis, biological evaluation, docking and NMR screening." European Journal of Medicinal Chemistry. 54 (2012): 823-833. Abstract

The close structural similarity between the two cyclooxygenase (COXs) isoforms and the absence of selective inhibitors without side effects continues to stimulate the development of novel approaches towards selective anti-inflammatory drugs. In the present study a small library of new indolic compounds involving two different substitutions patterns at the indole scaffold was synthesized. In order to establish a relation between the spatial distribution of known functional groups related with inhibitory activity, two substitution patterns were explored: one with substituents at N-1, C-3, C-5 positions and another at C-2, C-3 and C5 positions. Accordingly, indole positions C-5, C-3 and N-1 were substituted with: sulfonamide or methylsulfone at C-5, p-halo-benzyl group at C-3, and an alkyl chain with a trifluoromethyl group at N-1. Alternatively, a p-halo-benzyl group was introduced at C-2, leaving the indolic nitrogen free. Inhibitory studies were performed and the activity results obtained against both COXs isoforms were rationalized based on docking and NMR studies. Docking studies show that dialkyation at C-2 and C-3 favors a binding with an orientation similar to that of the known selective inhibitor SC-558. From the tested compounds, this substitution pattern is correlated with the highest inhibitory activity and selectivity: 70% COX-2 inhibition at 50 M, and low COX-1 inhibition (18±9%). Additionally, Saturation Transfer Difference NMR experiments reveal different interaction patterns with both COXs isoforms that may be related with different orientations of the sulfonamide group in the binding pocket. Despite the moderated inhibitory activities found, this study represents an innovative approach towards COXs inhibitory activity rationalization and to the design of anti-inflammatory drugs.

Cano, Manuela, Susana Nogueira, Ana Luisa Papoila, F. Aguiar, Pedro Martins, J. Marques, Iolanda Caires, J. Martins, C. Pedro, P. Paixão, J. Rosado-Pinto, Paula Leiria-Pinto, Daniel Aelenei, Ana Mendes, João Teixeira, M. C. Proença, and Nuno Neuparth. "Indoor Air Quality in Portuguese Children Day Care Centers ? ENVIRH Project." The Second International Conference on Building Energy and Environment (COBEE). 978-0-9816881-9-0; 0-9816881-9-5. 2012. Abstract

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Lapa, N., R. Barbosa, and B. Mendes. "Intrinsic properties of new materials for civil engineering works based on the reuse of MSWI bottom ashes: chemical and ecotoxicological assessment." Urban Mining: A global cycle approach to resource recovery from solid waste. Eds. R. Cossu, V. Salieri, and V. Bisinella. Padova: CISA Publisher, 2012. 298-307.
Zajega, F., Mancas M., Ben Mandhkour R., Leroy J., Riche N., Rocca F., Rybarczyk Y., and Dutoit T. "KinAct: the attentive social game demonstration." 11th Asian Conference on Computer Vision. Daejeon, Korea 2012. copy.pdf
Araújo, R., R. Castanhinha, O. Mateus, and R. Martins Late Jurassic theropod embryos from Porto das Barcas, Lourinhã formation, Portugal. Journal of Vertebrate Paleontology, Program and Abstracts, 2012, ISSN 1937-2809 ., 2012. Abstractaraujo_et_al_mateus_2012_dinosaur_eggs_portugal_svp_2012_abstract_book_meeting_abstracts.pdf.pdf

A clutch of several crushed eggs and embryos from the Late Jurassic (near the Kimmeridgian-Tithonian
boundary), Lourinhã Formation, Portugal contains a complete maxilla, erupted and scattered teeth,
and presacral vertebrae. The maxilla bears four teeth separated by individualized interdental plates,
the dorsal process of the maxilla is confluent with the maxillary body, the ventral rim of the antorbital
fossa is parallel to the tooth row, and the anterior border of the maxilla forms a right angle with the
ventral margin. The teeth are conical and recurved distally with carinae on mesial and distal sides. The
vertebrae are amphiplatyan, with a ventral pair of neurovascular foramina and heavily pitted articular
facets. These fossils allow unambiguous association of basal theropod osteology (Megalosauroidea) with
a new eggshell morphotype. Synchrotron micro-computed tomographic scanning (SRμCT), scanning
electron microscopy, and thin-sections under polarized and normal light revealed that the outer
ornamentation of the eggshell is composed of anastomosing ridges and islets, the pores communicate
near the outer region of the eggshells, and in radial section they are irregular canals that ramify towards
the surface. Micro-proto induced x-ray emission (micro-PIXE) analysis of the eggshell (excluding pores)
revealed the presence of Mg, Fe, Mn (0.33%, 0.27% and 0.18%, respectively) and several trace elements,
with a corresponding loss of Ca (39.4% detected but 40.0% expected for calcite), which suggests minimal
eggshell diagenesis. The eggshells do not luminesce, which could imply that no diagenetic alteration
took effect. However, the quenching effect of Fe2+ has to be taken into consideration. Conversely,
luminescence is observed in the pores since they are filled with sediment, composed of phyllosilicates,
as revealed by SRμCT, micro-PIXE and x-ray diffraction analyses.

Rebelo, M., T. Diogo, and S. McKee. "A Mathematical Treatment of the Fluorescence Capillary-Fill Device." SIAM, J. Applied Mathematics. 72.4 (2012): 1081-1112.
Cunha, Jácome, João Paulo Fernandes, Jorge Mendes, and João Saraiva. "MDSheet: A Framework for Model-driven Spreadsheet Engineering." Proceedings of the 34rd International Conference on Software Engineering. ICSE'12. ACM, 2012. 1395-1398. Abstracticse12_tooldemo.pdf

n this paper, we present MDSHEET, a framework for the embedding, evolution and inference of spreadsheet models. This framework offers a model-driven software development mechanism for spreadsheet users.

Martins, N., and M. Rebelo The method of fundamental solutions for elasticity problems with interfaces. Proceedings of 7th International Conference of the Croatian Society of Mechanics. Zadar, Croatia, 2012.