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2001
Cunha, José C., João M. Lourenço, and Vitor Duarte. "The DDBG distributed debugger." Parallel Program Development for Cluster Computing. Commack, NY, USA: Nova Science Publishers, Inc., 2001. 279-290. Abstractcap13.pdf

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Cunha, José C., João M. Lourenço, and Vitor Duarte. "Debugging of parallel and distributed programs." Parallel Program Development for Cluster Computing. Commack, NY, USA: Nova Science Publishers, Inc., 2001. 97-129. Abstractcap03.pdf

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Lourenço, João M., and José C. Cunha. "Fiddle: A Flexible Distributed Debugging Architecture." Proceedings of the International Conference on Computational Science-Part II. {ICCS}'01. London, UK: Springer-Verlag, 2001. 821-830. Abstracticcs01.pdf

In the recent past, multiple techniques and tools have been proposed and contributed to improve the distributed debugging functionalities, in several distinct aspects, such as handling the non-determinism, allowing cyclic interactive debugging of parallel programs, and providing more user-friendly interfaces. However, most of these tools are tied to a specific programming language and provide rigid graphical user interfaces. So they cannot easily adapt to support distinct abstraction levels or user interfaces. They also don't provide adequate support for cooperation with other tools in a software engineering environment. In this paper we discuss several dimensions which may contribute to develop more flexible distributed debuggers. We describe Fiddle, a distributed debugging tool which aims at overcoming some of the above limitations.

Santos, J. P., M. F. Laranjeira, and F. Parente. "Calculation of the triple to double ionization cross-section ratio of Li in the suddem approximation." Europhysics Letters. 55 (2001): 479. Abstract

The triple-to-double ionization cross-section ratio of Li in the high-energy limit was computed in the sudden approximation with relativistic wave functions. Together with the calculated value of Dalgarno and Sadeghpour (Phys. Rev. A, 46 (1992) R3591), for the Li double-to-single ionization cross-section ratio, the value of 6.263x10-5 was obtained for the triple-to-single ionization cross-section ratio. This value is in full agreement with Wehlitz et al. experimental value of (6.38+-2.40)x10-5 obtained recently with synchrotron radiation (Phys. Rev. Lett., 81 (1998) 1813).

Lima, M. M., and R. Monteiro. "Characterisation and thermal behaviour of a borosilicate glass." Thermochimica Acta. 373 (2001): 69-74. AbstractWebsite

The changes occurring during the heating of a borosilicate glass have been investigated by differential thermal analysis, dilatometric analysis and thermomechanical analysis. The thermal properties of this glass, such as glass transition temperature, dilatometric softening temperature and linear thermal expansion coefficient, have been determined. Viscosity measurements in the temperature range 898-1048 K were performed in a thermomechanical analyser equipped with a penetration attachment for isothermal measurement, and from the temperature dependence of viscosity a value of 290 kJ mol-1 was obtained for the activation energy for viscous flow. Devitrification of the glass was observed, specifically in finely powdered glass samples, where the precipitation of cristobalite was identified by X-ray diffraction. Glass powder compacts sintered by viscous flow and cristobalite precipitation reduced strongly the shrinkage rate. © 2001 Elsevier Science B.V.

Lima, M. M., and R. Monteiro. "Characterisation and thermal behaviour of a borosilicate glass." Thermochimica acta. 373 (2001): 69-74. Abstract
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Di Rocco, G., AS Pereira, SA Bursakov, OY Gavel, F. Rusnak, J. Lampreia, JJG Moura, and I. Moura. "Cloning of a novel Mo-Cu containing protein from Desulfovibrio.gigas." Journal of Inorganic Biochemistry. 86 (2001): 202. AbstractWebsite
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Lopes, A.a, Fortunato Nunes Vilarinho Martins E. a P. a. "Correlation between the microscopic and macroscopic characteristics of SnO2 thin film gas sensors." International Journal of Inorganic Materials. 3 (2001): 1349-1351. AbstractWebsite

Hall effect measurements have been used to evaluate the conduction mechanism, exhibited by tin oxide thin film gas sensors deposited by spray pyrolysis. Two experiments have been carried out: (i) Hall measurements in air and (ii) in the presence of methane (first results reported), both as a function of temperature. From the measurements performed it was possible to infer the potential barrier and its dependence with the atmosphere used. The results obtained for the carrier concentration and mobility have been analysed in the light of the oxygen diffusion mechanism at grain boundaries by using the grain boundary-trapping model. In the presence of the methane gas the electrical resistivity decreases due to the lowering of the inter-grain boundary barrier height. © 2001 Published by Elsevier Science Ltd.

Cunha, José C., João Louren{\c c}o, and Vitor Duarte. "The DDBG distributed debugger." Commack, NY, USA: Nova Science Publishers, Inc., 2001. 279-290.
Cunha, José C., João Louren{\c c}o, and Vitor Duarte. "Debugging of parallel and distributed programs." Commack, NY, USA: Nova Science Publishers, Inc., 2001. 97-129.
Louren{\c c}o, João, and José C. Cunha. "Fiddle: A Flexible Distributed Debugging Architecture." Proceedings of the International Conference on Computational Science-Part II. ICCS ’01. London, UK, UK: Springer-Verlag, 2001. 821-830. Abstract
In the recent past, multiple techniques and tools have been proposed and contributed to improve the distributed debugging functionalities, in several distinct aspects, such as handling the non-determinism, allowing cyclic interactive debugging of parallel programs, and providing more user-friendly interfaces. However, most of these tools are tied to a specific programming language and provide rigid graphical user interfaces. So they cannot easily adapt to support distinct abstraction levels or user interfaces. They also don’t provide adequate support for cooperation with other tools in a software engineering environment. In this paper we discuss several dimensions which may contribute to develop more flexible distributed debuggers. We describe Fiddle, a distributed debugging tool which aims at overcoming some of the above limitations.
Lanca, M. C., J. N. Marat-Mendes, and L. A. Dissado. "The fractal analysis of water trees - An estimate of the fractal dimension." Ieee Transactions on Dielectrics and Electrical Insulation. 8 (2001): 838-844. AbstractWebsite

Water trees result from ac electrical aging of the polymeric insulation of medium and HV power cables in a humid or wet environment. As suggested by their name, they arise from penetration of water in the polymer. Visual observation with the help of an optical microscope shows tree (bush) type structures. This suggests that water trees might be fractal objects. Calculation of the fractal dimension from experimental samples may confirm the fractal characteristics and also give information on the damage caused to the polymer. In this work images of water trees taken under the optical microscope, dyed by methylene blue and etched for scanning electron microscopy (SEM), were studied in order to estimate the fractal dimension using a box-counting algorithm. The photographs, made using an optical microscope (scale of 100 mum), of the dyed samples were obtained from laboratory-aged low-density polyethylene (LDPE) specimens using accelerated techniques. Different field amplitude and frequency and also time of aging were used and the dimension values were compared. SEM images resulting from aged cross-linked polyethylene (XLPE) cables revealed a structure at a different scale (similar to 3 mum). Each photograph was analyzed to compare regions with and without water trees.

Lanca, M. C., J. N. Marat-Mendes, and L. A. Dissado. "The fractal analysis of water trees - An estimate of the fractal dimension." Ieee Transactions on Dielectrics and Electrical Insulation. 8 (2001): 838-844. AbstractWebsite

Water trees result from ac electrical aging of the polymeric insulation of medium and HV power cables in a humid or wet environment. As suggested by their name, they arise from penetration of water in the polymer. Visual observation with the help of an optical microscope shows tree (bush) type structures. This suggests that water trees might be fractal objects. Calculation of the fractal dimension from experimental samples may confirm the fractal characteristics and also give information on the damage caused to the polymer. In this work images of water trees taken under the optical microscope, dyed by methylene blue and etched for scanning electron microscopy (SEM), were studied in order to estimate the fractal dimension using a box-counting algorithm. The photographs, made using an optical microscope (scale of 100 mum), of the dyed samples were obtained from laboratory-aged low-density polyethylene (LDPE) specimens using accelerated techniques. Different field amplitude and frequency and also time of aging were used and the dimension values were compared. SEM images resulting from aged cross-linked polyethylene (XLPE) cables revealed a structure at a different scale (similar to 3 mum). Each photograph was analyzed to compare regions with and without water trees.

Martins, AF, C. R. Leal, M. H. Godinho, and F. Fried. "The influence of polymer molecular weight on the first normal-stress difference and shear-viscosity of LC solutions of hydroxypropylcellulose." Molecular Crystals and Liquid Crystals. 362.1 (2001): 305-312. Abstract
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de Carvalho, Nunes C., A. Luis, G. Lavareda, A. Amaral, P. Brogueira, and M. H. Godinho. "ITO thin films deposited by RTE on flexible transparent substrates." Optical Materials. 17.1 (2001): 287-290. Abstract
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Figueiredo, MO, JP Veiga, TP Silva, P. B. Lourenço, and P. Roca. "Materials and reconstruction techniques at the aqueduct of Carthage since the Roman period." Historical constructions. Guimarães: Universidade do Minho (2001): 391-400. Abstract
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Leroy, C. a, M. C. a Ferro, R. C. C. b Monteiro, and M. H. V. a Fernandes. "Production of glass-ceramics from coal ashes." Journal of the European Ceramic Society. 21 (2001): 195-202. AbstractWebsite

Coal fly ashes produced by an extinguished power plant in the north of Portugal have been melted with addition of CaCO3 and Na2CO3 to obtain glasses. One of the formulated compositions was selected for further studies and it was possible to manufacture glass-ceramics by crystallizing the parent glass through adequate time-temperature schedules. The macroscopic appearance, microstructure, mechanical, thermal and chemical properties indicated that these materials are quite attractive for cladding applications, exhibiting in some cases better performances than the conventional ceramic tiles.

Baldwin, J., W. C. Voegtli, N. Khidekel, P. Moenne-Loccoz, C. Krebs, AS Pereira, B. A. Ley, BH HUYNH, T. M. Loehr, P. J. Riggs-Gelasco, A. C. Rosenzweig, and J. M. Bollinger. "Rational reprogramming of the R2 subunit of Escherichia coli ribonucleotide reductase into a self-hydroxylating monooxygenase." Journal of the American Chemical Society. 123 (2001): 7017-7030. AbstractWebsite

The outcome of O-2 activation at the diiron(II) cluster in the R2 subunit of Escherichia coli (class I) ribonucleotide reductase has been rationally altered from the normal tyrosyl radical (Y122)(1) production to self-hydroxylation of a phenylalanine side-chain by two amino acid substitutions that leave intact the (histidine)(2)-(carboxylate)(4) ligand set characteristic of the diiron-carboxylate family. Iron ligand Asp (D) 84 was replaced with Glu (E), the amino acid found in the cognate position of the structurally similar diiron-carboxylate protein, methane monooxygenase hydroxylase (MMOH). We previously showed that this substitution allows accumulation of a mu -1,2-peroxodiiron(III) intermediate,(2 3) which does not accumulate in the wild-type (wt) protein and is probably a structural homologue of intermediate P (H-peroxo) in O-2 activation by MMOH.(4) In addition, the near-surface residue Trp (W) 48 was replaced with Phe (F), blocking transfer of the "extra" electron that occurs in wt R2 during formation of the formally Fe(LII)Fe(IV) cluster X.(5-7) Decay of the mu1,2-peroxodiiron(III) complex in R2-W38F/D84E gives an initial brown product, which contains very little YI22(.) and which converts very slowly (t(1/2) similar to 7 h) upon incubation at 0 degreesC to an intensely purple final product. X-ray crystallographic analysis of the purple product indicates that F208 has undergone epsilon -hydroxylation and the resulting phenol has shifted significantly to become st ligand to Fe2 of the diiron cluster. Resonance Raman (RR) spectra of the purple product generated with O-16(2) or O-18(2) show appropriate isotopic sensitivity in bands assigned to O-phenyl and Fe-O-phenyl vibrational modes, confirming that the oxygen of the Fe(III)-phenolate species is derived from Or. Chemical analysis, experiments involving interception of the hydroxylating intermediate with exogenous reductant, and Mossbauer and EXAFS characterization of the brown and purple species establish that F208 hydroxylation occurs during decay of the peroxo complex and formation of the initial brown product. The slow transition to the purple Fe(LII)-phenolate species is ascribed to a ligand rearrangement in which mu -O2- is lost and the F208-derived phenolate coordinates. The reprogramming to F208 monooxygenase requires both amino acid substitutions, as very little epsilon -hydroxyphenylalanine is formed and pathways leading to Y122(.) formation predominate in both R2-D84E and R2-W48F(2-7).

Indelicato, P., G. C. Rodrigues, E. Lindroth, M. A. Ourdane, F. Parente, J. P. Santos, P. Patté, and J. Bieron. "Relativistic and many-body effects on total binding energies of Cesium and other highly-charged ion." Physica Scripta. T92 (2001): 327. Abstract

The determination of atomic masses from highly ionized atoms using Penning Traps requires precise values for electronic binding energies. In the present work, binding energies of several ions (from several elements) are calculated in the framework of two relativistic many-body methods: Relativistic Many-Body Perturbation Theory (RMBPT) and Multi-Configuration Dirac– Fock (MCDF). The ions studied in this work are: Cl (He and Li-like), Se (F and Ne-like), Cs (He, Be, Ne, Al, Cl, Ar, K, Kr, Xe-like and neutral Cs), Hg, Pb and U (Br and Kr-like). Some of them are presented in this paper. Cesium has been treated in more details, allowing for a systematic comparison between MCDF and RMBPT methods. The Cs ions binding energies allow for the determination of atomic Cs mass, which can be used in a QED-independent fine structure constant determination.

Indelicato, P., E. Lindroth, T. Beier, J. Bieron, A. M. Costa, I. Lindgren, J. P. Marques, A. M. Martenson-Pendrill, M. C. Martins, M. A. Ourdane, F. Parente, P. Patté, G. C. Rodrigues, S. Salomonson, and J. P. Santos. "Relativistic Calculations for Trapped Ions." Hyperfine Interactions. 132 (2001): 347-361. AbstractWebsite

We present recent results in the field of total binding energy calculations, Landщ factors, quantum electrodynamics corrections and lifetime that are of interest for ion traps and ion sources. We describe in detail MCDF and RMBPT calculation of ionic binding energies, which are needed for the determination of atomic masses from highly charged ion measurements. We also show new results concerning Landщ factor in 3-electron ions. Finally we describe how relativistic calculations can help understand the physics of heavy ion production ion sources.

Cabrita, A., L. Pereira, D. Brida, A. Lopes, A. Marques, I. Ferreira, E. Fortunato, and R. Martins. "Silicon carbide photodiodes: Schottky and PINIP structures." Applied surface science. 184.1 (2001): 437-442. Abstract
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Cabrita, A., L. Pereira, D. Brida, A. Lopes, A. Marques, I. Ferreira, E. Fortunato, and R. Martins. "{Silicon carbide photodiodes: Schottky and PINIP structures}." Applied Surface Science. 184 (2001): 437-442. AbstractWebsite
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2000
Dias, JM, CA Cunha, S. Teixeira, G. Almeida, C. Costa, J. Lampreia, JJG Moura, I. Moura, and MJ Romao. "Crystallization and preliminary X-ray analysis of a membrane-bound nitrite reductase from Desulfovibrio desulfuricans ATCC 27774." ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY. 56 (2000): 215-217. Abstract
{Nitrite reductase from the sulfate-reducing bacterium Desulfovibrio desulfuricans ATCC 27774 is a multihaem (type c) membrane-bound enzyme that catalyzes the dissimilatory conversion of nitrite to ammonia. Crystals of the oxidized form of this enzyme were obtained using PEG and CaCl2 as precipitants in the presence of 3-(decylmethylammonium)propane-1-sulfonate and belong to the space group P2(1)2(1)2(1), With unit-cell parameters a = 78.94
Cidade, M. T., C. R. Leal, M. H. Godinho, and Patrick Navard. "Temperature dependence of the rheological properties of acetoxypropylcellulose in the thermotropic chiral nematic phase." 348.1 (2000): 27-39. Abstract
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Leite, {João Alexandre Carvalho Pinheiro}, and {José Júlio Alves} Alferes. "Dynamic updates of non-monotonic knowledge bases." Journal Of Logic Programming. 45 (2000): 43-70. Abstract
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