During the course of evolution, the cellulosome, one of Nature's most intricate multi-enzyme complexes, has been continuously fine-tuned to efficiently deconstruct recalcitrant carbohydrates. To facilitate the uptake of released sugars, anaerobic bacteria use highly ordered protein-protein interactions to recruit these nanomachines to the cell surface. Dockerin modules located within a non-catalytic macromolecular scaffold, whose primary role is to assemble cellulosomal enzymatic subunits, bind cohesin modules of cell envelope proteins, thereby anchoring the cellulosome onto the bacterial cell. Here we have elucidated the unique molecular mechanisms used by anaerobic bacteria for cellulosome cellular attachment. The structure and biochemical analysis of five cohesin-dockerin complexes revealed that cell surface dockerins contain two cohesin-binding interfaces, which can present different or identical specificities. In contrast to the current static model, we propose that dockerins utilize multivalent modes of cohesin recognition to recruit cellulosomes to the cell surface, a mechanism that maximises substrate access while facilitating complex assembly.

The importance of understanding interactomes makes preeminent the study of protein interactions and protein complexes. Traditionally, protein interactions have been elucidated by experimental methods or, with lower impact, by simulation with protein docking algorithms. This article describes features and applications of the BiGGER docking algorithm, which stands at the interface of these two approaches. BiGGER is a user-friendly docking algorithm that was specifically designed to incorporate experimental data at different stages of the simulation, to either guide the search for correct structures or help evaluate the results, in order to combine the reliability of hard data with the convenience of simulations. Herein, the applications of BiGGER are described by illustrative applications divided in three Case Studies: (Case Study A) in which no specific contact data is available; (Case Study B) when different experimental data (e.g., site-directed mutagenesis, properties of the complex, NMR chemical shift perturbation mapping, electron tunneling) on one of the partners is available; and (Case Study C) when experimental data are available for both interacting surfaces, which are used during the search and/or evaluation stage of the docking. This algorithm has been extensively used, evidencing its usefulness in a wide range of different biological research fields.

Abstract The present work shows the effect of magnesium doping on structural, optoelectrical and electrical properties of Cu2O thin films prepared by spray pyrolysis. The variation in the concentration of Mg shows significant impact on the final thin film properties, whereas the film doped with 0.5 at{%} of Mg exhibited major property improvements in comparison with the undoped thin film and among the other concentrations tested. This condition was further applied for the deposition of an absorber layer in a heterojunction solar cell array with a gradient in thicknesses of active layers to investigate the impact of changing thicknesses on the PV parameters of the solar cell. TiO2 was used as a window layer and the 0.5 at{%} Cu2O doped film as an absorber layer. The produced heterojunction solar cell array was further exposed to a rapid thermal annealing treatment. The I–V measurements show an open circuit voltage of up to 365 mV and a short circuit current density, which is dependent on absorber layer thickness, and reaches to a maximum value of 0.9 mA/cm2.

The usability of requirements engineering (RE) techniques has been recognised as a key factor for their successful adoption by industry. RE techniques must be accessible to stakeholders with different backgrounds, so they can be empowered to effectively and efficiently contribute to building successful systems. When selecting an appropriate requirements engineering technique for a given context, one should consider the usability supported by each of the candidate techniques. The first step towards achieving this goal is to gather the best evidence available on the usability of RE approaches by performing a systematic literature review, to answer one research question: How is the usability of requirements engineering techniques and tools addressed? We systematically review articles published in the Requirements Engineering Journal, one of the main sources for mature work in RE, to motivate a research roadmap to make RE approaches more accessible to stakeholders with different backgrounds.

Measurements in civil engineering load tests usually require considerable time and complex procedures. Therefore, measurements are usually constrained by the number of sensors resulting in a restricted monitored area. Image processing analysis is an alternative way that enables the measurement of the complete area of interest with a simple and effective setup. In this article photo sequences taken during load displacement tests were captured by a digital camera and processed with image correlation algorithms. Three different image processing algorithms were used with real images taken from tests using specimens of PVC and Plexiglas. The data obtained from the image processing algorithms were also compared with the data from physical sensors. A complete displacement and strain map were obtained. Results show that the accuracy of the measurements obtained by photogrammetry is equivalent to that from the physical sensors but with much less equipment and fewer setup requirements.

In this paper we revisit the Jackson exponentiality test. We study and provide functions in R language to compute theoretical moments, the distribution function and quantiles of the statistic test. Approximations to the exact distribution function and quantiles are also provided and their precision discussed. In addition, we provide an application of the Jackson test to real data.In this paper we revisit the Jackson exponentiality test. We study and provide functions in R language to compute theoretical moments, the distribution function and quantiles of the statistic test. Approximations to the exact distribution function and quantiles are also provided and their precision discussed. In addition, we provide an application of the Jackson test to real data.

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Requirements documents and models need to be used by many stakeholders with dierent technological prociency, during software development. Each stakeholder may need to understand the entire (or simply part of the) requirements artifacts. To empower those stakeholders, views of the requirements should be congurable to their particular needs. Information visualization techniques may help in this process. In this paper, we propose dierent views aimed at highlighting information that is relevant for a particular stakeholder, helping him to query requirements artifacts. We oer three kinds of visualization capturing language and domain elements, while providing a gradual model overview: the big picture view, the syntax-based view, and the concern-based view. We instantiate these views with i* models and introduce an implementation prototype in the iStarLab tool.

The i* community has published guidelines, including model layout guidelines, for the construction of models. Our goal is to evaluate the effect of the layout guidelines on the i* novice stakeholders’ ability to understand and review i* models. We conducted a quasi-experiment where participants were given two understanding and two reviewing tasks. Both tasks involved a model with a bad layout and another model following the i* layout guidelines. We evaluated the impact of layouts by combining the success level in those tasks and the required effort to accomplish them. Effort was assessed using time, perceived complexity (with NASA TLX), and eye-tracking data. Participants were more successful in understanding than in reviewing tasks. However, we found no statistically significant difference in the success, time taken, or perceived complexity, between tasks conducted with models with a bad layout and models with a good layout. Most participants had little to no prior knowledge in i*, making them more representative of stakeholders with no requirements engineering expertise. They were able to understand the models fairly well after a short tutorial, but struggled when reviewing models. Adherence to the existing i* layout guidelines did not significantly impact i* model understanding and reviewing performance.

The Ørsted Dal Member of the Upper Triassic Fleming Fjord Formation in East Greenland is well known for its rich vertebrate fauna, represented by numerous specimens of both body and ichnofossils. In particular, the footprints of theropod dinosaurs have been described. Recently, an international expedition discovered several slabs with 100 small chirotheriid pes and manus imprints (pes length 4–4.5 cm) in siliciclastic deposits of this unit. They show strong similarities with Brachychirotherium, a characteristic Upper Triassic ichnogenus with a global distribution. A peculiar feature in the Fleming Fjord specimens is the lack of a fifth digit, even in more deeply impressed imprints. Therefore, the specimens are assigned here tentatively to cf. Brachychirotherium. Possibly, this characteristic is related to the extremely small size and early ontogenetic stage of the trackmaker. The record from Greenland is the first evidence of this morphotype from the Fleming Fjord Formation. Candidate trackmakers are crocodylian stem group archosaurs; however, a distinct correlation with known osteological taxa from this unit is not currently possible. While the occurrence of sauropodomorph plateosaurs in the bone record links the Greenland assemblage more closer to that from the Germanic Basin of central Europe, here the described footprints suggest a Pangaea-wide exchange.Supplementary material: Three-dimensional model of cf. Brachychirotherium pes–manus set (from MGUH 31233b) from the Upper Triassic Fleming Fjord Formation (Norian–Rhaetian) of East Greenland as pdf, ply and jpg files (3D model created by Oliver Wings; photographs taken by Jesper Milàn) is available at https://doi.org/10.6084/m9.figshare.c.2133546

In this work we present a fully automated plasma-enhanced reactive thermal evaporation system (rf-PERTE) that can be used for the deposition of transparent metal oxide films without intentional heating of the substrate. The system and developed software enables the full control over critical deposition conditions such as mass flow of oxygen, process pressure, current flowing through crucible and rf-power. These parameters are automatically adjusted during the deposition thus keeping them in a narrow process window. This way, highly transparent and conductive coating can be deposited with a high degree of reproducibility of the optical and electrical characteristics. The resistivity of 9×10^-4 Ω-cm and the peak transmittance of 90% in the visible spectral range were achieved for indium oxide films deposited on glass substrates. This technique is also suitable for the deposition of transparent conducting coatings in a wide range of plastic materials for flexible solar cells. In particular, we have successfully deposited indium oxide on PEN (polyethylene naphtalate) sheets with electrical and optical properties approaching the ones for films on glass.

© 2016, Springer-Verlag Berlin Heidelberg.The glaze and in-glaze pigments of the historical nineteenth-century glazed tiles from the Pena National Palace (Sintra, Portugal) were characterized using a multi-analytical approach. Chemical composition and microstructural characterization were ascertained by µ-PIXE, µ-Raman, optical microscopy and VP-SEM–EDS. The manufacturing technique and colour palette in these tiles were found to be close to the ceramic pigments used in traditional majolica. The blue and purple colours derive from cobalt oxide and manganese oxide, respectively. A mixture of Pb–Sn–Sb yellow with cobalt oxide and iron oxide was used for green and dark yellow, respectively, while grey tonalities consist of a complex mixture of cobalt oxide, manganese oxide and Pb–Sn–Sb yellow in different proportions. Results obtained allowed the determination of the oxides and elements used in pigments as well as production techniques, resorting to traditional majolica manufacture, although the tiles were produced by the end of the nineteenth century.

The work reported here addresses load matching improvement in Net Zero Energy Buildings (Net-ZEBs). The related relevant literature shows that currently research work is mainly focused on improving the load matching of individual buildings. In this paper the concept of a Cooperative Net Zero Energy Community (CNet-ZEC) is introduced, extending discussion to the enhancement of load matching at a wider community level. Both building and community levels are compared in order to assess the work proposed here, through the analysis of three distinct scenarios where five Net-ZEBs work individually or in community.

The results presented here were obtained through a detailed simulation based on 1-min resolution stochastic load profiles and recorded weather data. The results indicate that over the period of a year the CNet-ZEC has the potential to increase the electrical demand covered by onsite electricity generation up to 21% and the on-site generation that is used by the building up to 15%. The following elements are considered by the CNet-ZEC in order to produce those results: (i) demand heterogeneity of the buildings integrating the community; (ii) the higher number of controllable devices; and (iii) the potential higher amount of energy available to satisfy the community demand.

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