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2008
Oliveira, L. B., J. R. Fernandes, I. M. Filanovsky, C. J. M. Verhoeven, and M. M. Silva. "Introduction." Analysis and Design of Quadrature Oscillators (2008): 1-5. Abstract
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Prabakaran, R., L. Silva, E. Fortunato, R. Martins, and I. Ferreira. "Investigation of hydrocarbon coated porous silicon using PECVD technique to detect CO< sub> 2 gas." Journal of Non-Crystalline Solids. 354.19 (2008): 2610-2614. Abstract
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Vidinha, P., N. M. T. Louren?o, C. Pinheiro, A. R. Brás, T. Carvalho, T. Santos-Silva, A. Mukhopadhyay, MJ Romão, J. Parola, M. Dionisio, J. M. S. Cabral, CAM Afonso, and S. Barreiros. "Ion jelly: A tailor-made conducting material for smart electrochemical devices." Chemical Communications (2008): 5842-5844. Abstract
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Santos, J. P., and F. Parente. "Ionisation of phosphorus, arsenic, antimony, and bismuth by electron impact." The European Physical Journal D - Atomic, Molecular, Optical and Plasma Physics. 47 (2008): 339-350. AbstractWebsite
Abstract.  Total ionization cross sections of neutral phosphorus, arsenic, antimony, and bismuth atoms by electron impact are reported and compared to the only available experimental results by Freund et al. [Phys. Rev. A 41, 3575 (1990)]. These calculations take into account the possibilities that some target atoms used in the experiments were in metastable states close to the ground state, the excitation-autoionization of nsnp4 excited states may be substantial, and the ions produced in experiments may be in excited, low-lying metastable states. The cross sections for direct ionization calculations are based on the BEB model by Kim and Rudd [Phys. Rev. A 50, 3954 (1994)]. Plane-wave Born cross sections scaled by the method developed by Kim [Phys. Rev. A 64, 3954 032713 (2001)] are used to determine the contributions from excitation-autoionization. The combination of the BEB model and the scaled Born cross sections is in agreement with the experimental data by Freund et al. These theoretical data are useful to experimentalists and can be used to complete data tables needed for plasma or astrophysical studies.
Santos, J. P., and F. Parente. "Ionisation of phosphorus, arsenic, antimony, and bismuth by electron impact." The European Physical Journal D - Atomic, Molecular, Optical and Plasma Physics. 47 (2008): 339-350. AbstractWebsite

Abstract.&nbsp;&nbsp;Total ionization cross sections of neutral phosphorus, arsenic, antimony, and bismuth atoms by electron impact are reported and compared to the only available experimental results by Freund et&nbsp;al. [Phys. Rev. A 41, 3575 (1990)]. These calculations take into account the possibilities that some target atoms used in the experiments were in metastable states close to the ground state, the excitation-autoionization of nsnp4 excited states may be substantial, and the ions produced in experiments may be in excited, low-lying metastable states. The cross sections for direct ionization calculations are based on the BEB model by Kim and Rudd [Phys. Rev. A 50, 3954 (1994)]. Plane-wave Born cross sections scaled by the method developed by Kim [Phys. Rev. A 64, 3954 032713 (2001)] are used to determine the contributions from excitation-autoionization. The combination of the BEB model and the scaled Born cross sections is in agreement with the experimental data by Freund et&nbsp;al. These theoretical data are useful to experimentalists and can be used to complete data tables needed for plasma or astrophysical studies.

Palma, Angelina S., Yan Liu, Maria A. Campanero-Rhodes, Robert A. Childs, Mark S. Stoll, Thomas Schallus, Claudia Muhle-Goll, Mukram Mackeen, Wengang Chai, and Ten Feizi. "Malectin-a Novel Lectin of the Endoplasmic Reticulum and a Candidate New Player in the Early Steps Of Protein N-Glycosylation." Glycobiology. 18 (2008): 948-949. Abstract
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Schallus, Thomas, Christine Jaeckh, Krisztina Feher, Angelina S. Palma, Yan Liu, Jeremy C. Simpson, Mukram Mackeen, Gunter Stier, Toby J. Gibson, Ten Feizi, Tomas Pieler, and Claudia Muhle-Goll. "Malectin: A novel carbohydrate-binding protein of the endoplasmic reticulum and a candidate player in the early steps of protein N-glycosylation." Molecular Biology of the Cell. 19 (2008): 3404-3414. Abstract
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Oliveira, L. B., J. R. Fernandes, I. M. Filanovsky, C. J. M. Verhoeven, and M. M. Silva. "Measurement Results." Analysis and Design of Quadrature Oscillators (2008): 119-135. Abstract
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Fortunato, Elvira, Pedro Barquinha, Goncalo Goncalves, Luis Pereira, and Rodrigo Martins. "New Amorphous Oxide Semiconductor for Thin Film Transistors (TFTs)." Advanced Materials Forum Iv. Eds. AT Marques, AF Silva, APM Baptista, C. Sa, FJLA Alves, LF Malheiros, and M. Vieira. Vol. 587-588. Materials Science Forum, 587-588. 2008. 348-352. Abstract
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Neagu, R. M., E. R. Neagu, M. C. Lanca, and J. N. Marat-Mendes. "New Experimental Facts Concerning the Thermally Stimulated Discharge Current in Dielectric Materials." Advanced Materials Forum Iv. Eds. AT Marques, AF Silva, APM Baptista, C. Sa, FJLA Alves, LF Malheiros, and M. Vieira. Vol. 587-588. Materials Science Forum, 587-588. 2008. 328-332. Abstract

The thermally stimulated discharge current (TSDC.) method is a very sensitive and a very selective technique to analyze dipole disorientation and the movement of de-trapped space charge (SC). We have proposed a variant of the TSDC method, namely the final thermally stimulated discharge current (FTSDC) technique. flee experimental conditions can be selected so that the FTSDC is mainly determined by the SC de-trapping. The temperatures of the maximum intensity of the fractional polarization peaks obtained at low temperature, in the range of the local (secondary) relaxation, are in general about 10 to 20 K above the poling temperature. Measurements of the FTSDC in a wide temperature range demonstrate the existence of an apparent peak at a temperature T-ma shifted with about 10 to 30 K above the charging temperature T-c. The shift of T-ma with respect to T-c depends on the experimental conditions. The peak width at the half maximum intensity decreases as T-c increases and the thermal apparent activation energy increases. The variations are not monotonous revealing the temperature range where the molecular motion is stronger and consequently the charge trapping and de-trapping processes are affected. Our results demonstrate that there is a strong similarity between the elementary peaks obtained by the two methods, and the current is mainly determined by SC de-trapping. Even the best elementary peaks are not fitted very well by the analytical equation, indicating that the hypothesis behind this equation have to be reconsidered.

Neagu, R. M., E. R. Neagu, Carmo M. Lanca, and J. N. Marat-Mendes. "New Experimental Facts Concerning the Thermally Stimulated Discharge Current in Dielectric Materials." Advanced Materials Forum Iv. Eds. AT Marques, AF Silva, APM Baptista, C. Sa, FJLA Alves, LF Malheiros, and M. Vieira. Vol. 587-588. Materials Science Forum, 587-588. 2008. 328-332. Abstract

The thermally stimulated discharge current (TSDC.) method is a very sensitive and a very selective technique to analyze dipole disorientation and the movement of de-trapped space charge (SC). We have proposed a variant of the TSDC method, namely the final thermally stimulated discharge current (FTSDC) technique. flee experimental conditions can be selected so that the FTSDC is mainly determined by the SC de-trapping. The temperatures of the maximum intensity of the fractional polarization peaks obtained at low temperature, in the range of the local (secondary) relaxation, are in general about 10 to 20 K above the poling temperature. Measurements of the FTSDC in a wide temperature range demonstrate the existence of an apparent peak at a temperature T-ma shifted with about 10 to 30 K above the charging temperature T-c. The shift of T-ma with respect to T-c depends on the experimental conditions. The peak width at the half maximum intensity decreases as T-c increases and the thermal apparent activation energy increases. The variations are not monotonous revealing the temperature range where the molecular motion is stronger and consequently the charge trapping and de-trapping processes are affected. Our results demonstrate that there is a strong similarity between the elementary peaks obtained by the two methods, and the current is mainly determined by SC de-trapping. Even the best elementary peaks are not fitted very well by the analytical equation, indicating that the hypothesis behind this equation have to be reconsidered.

Neagu, R. M., E. R. Neagu, Carmo M. Lanca, J. N. Marat-Mendes, AT Marques, AF Silva, APM Baptista, C. Sa, FJLA Alves, LF Malheiros, and M. Vieira. "New Experimental Facts Concerning the Thermally Stimulated Discharge Current in Dielectric Materials." Advanced Materials Forum Iv. Vol. 587-588. 2008. 328-332. Abstract
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Schulp, AS, M. J. Polcyn, O. Mateus, LL Jacobs, and ML Morais. "A new species of Prognathodon (Squamata, Mosasauridae) from the Maastrichtian of Angola, and the affinities of the mosasaur genus Liodon." Proceedings of the Second Mosasaur Meeting, Fort Hays Studies Special Issue 3, Fort Hays State University, Hays, Kansas. 2008. 1-12. Abstract
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Gavel, OY, SA Bursakov, G. Di Rocco, J. Trincao, I. J. Pickering, GN George, JJ Calvete, VL Shnyrov, CD Brondino, AS Pereira, J. Lampreia, P. Tavares, JJG Moura, and I. Moura. "A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774." Journal of Inorganic Biochemistry. 102 (2008): 1380-1395. AbstractWebsite

Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the "LID" domain. The sequence (129)Cys-X(5)-His-X(15)-Cys-X(2)-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain. (C) 2008 Elsevier Inc. All rights reserved.

Morrison, J. C., S. Boyd, L. Marsano, B. Bialecki, T. Ericsson, and J. P. Santos. "Numerical methods for solving the Hartree-Fock equations of diatomic molecules I." Communications in Computational Physics. 5 (2008): 959-985. AbstractWebsite
The theory of domain decomposition is described and used to divide the variable domain of a diatomic molecule into separate regions which are solved independently. This approach makes it possible to use fast Krylov methods in the broad interior of the region while using explicit methods such as Gaussian elimination on the boundaries. As is demonstrated by solving a number of model problems, these methods enable one to obtain solutions of the relevant partial differential equations and eigenvalue equations accurate to six significant figures with a small amount of computational time. Since the numerical approach described in this article decomposes the variable space into separate regions where the equations are solved independently, our approach is very well-suited to parallel computing and offers the long term possibility of studying complex molecules by dividing them into smaller fragments that are calculated separately.
Figueiredo, Ondina M., Teresa Pereira Silva, and João Pedro Veiga. "Oxidation state and coordination of iron in red pre-soils: first results from a Fe K-edge XANES study on regoliths from Santiago Island, Cape Verde." European Geoscience Union, General Assembly 2008, Division of Soil System Science SSS-14 New Frontiers in Soil Analysis (2008). Abstract
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Fernandes, J. R., H. B. Goncalves, L. B. Oliveira, and M. M. Silva. "A pulse generator for UWB-IR based on a relaxation oscillator." Circuits and Systems II: Express Briefs, IEEE Transactions on. 55 (2008): 239-243. Abstract
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Oliveira, L. B., J. R. Fernandes, I. M. Filanovsky, C. J. M. Verhoeven, and M. M. Silva. "Quadrature LC-Oscillator." Analysis and Design of Quadrature Oscillators (2008): 81-98. Abstract
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Oliveira, L. B., J. R. Fernandes, I. M. Filanovsky, C. J. M. Verhoeven, and M. M. Silva. "Quadrature Oscillator-Mixer." Analysis and Design of Quadrature Oscillators (2008): 63-80. Abstract
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Oliveira, L. B., J. R. Fernandes, I. M. Filanovsky, C. J. M. Verhoeven, and M. M. Silva. "Quadrature Relaxation Oscillator." Analysis and Design of Quadrature Oscillators (2008): 37-61. Abstract
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Amaral, Paula, Joaquim Júdice, and Hanif D. Sherali. "A reformulation–linearization–convexification algorithm for optimal correction of an inconsistent system of linear constraints." Computers & Operations Research. 35 (2008): 1494-1509. Abstract
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Chastre, C., and M. G. Silva Reinforced Concrete Columns Jacketed with FRP Composites and Subjected to Cyclic Horizontal Loads. International Conference CCC2008 - Challenges for Civil Construction. Porto: FEUP, 2008. Abstract
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Roque, A. A., Tiago A. N. Silva, J. M. F. Calado, and J. C. Q. Dias Rolling bearing fault detection and isolation – A didactic study. 4th WSEAS/IASME International Conference on EDUCATIONAL TECHNOLOGIES (EDUTE'08). World Scientific and Engineering Academy and Society (WSEAS), 2008. Abstract
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Palma, M. L., and J. P. Santos. "Spin-rotation and nuclear shielding constants of sulfur hexafluoride." Molecular Physics. 106 (2008): 1241-1247. AbstractWebsite
We present a first theoretical determination of the hyperfine coupling constants of a spherical top molecule using ab initio methods. The scalar and tensorial contributions to the spin-rotation constants and the diamagnetic and paramagnetic contributions to the nuclear shielding constant are calculated for the 32SF6 molecule. The corrections to the spin-rotation constants due to nuclear Thomas precession are evaluated and discussed. Our results are compared with previously reported experimental values.
Palma, M. L., and J. P. Santos. "Spin-rotation and nuclear shielding constants of sulfur hexafluoride." Molecular Physics. 106 (2008): 1241-1247. AbstractWebsite

We present a first theoretical determination of the hyperfine coupling constants of a spherical top molecule using <i>ab initio</i> methods. The scalar and tensorial contributions to the spin-rotation constants and the diamagnetic and paramagnetic contributions to the nuclear shielding constant are calculated for the <sup>32</sup>SF<sub>6</sub> molecule. The corrections to the spin-rotation constants due to nuclear Thomas precession are evaluated and discussed. Our results are compared with previously reported experimental values.