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2009
Ayouchi, R., L. Bentes, C. Casteleiro, O. Conde, C. P. Marques, E. Alves, A. M. C. Moutinho, H. P. Marques, O. Teodoro, and R. Schwarz. "{Photosensitivity of nanocrystalline ZnO films grown by PLD}." Applied Surface Science. 255 (2009): 5917-5921. Abstract

We have studied the properties of ZnO thin films grown by laser ablation of ZnO targets on (0 0 0 1) sapphire (Al2O3), under substrate temperatures around 400 8C. The films were characterized by different methods including X-ray photoelectron spectroscopy (XPS), X-ray diffraction (XRD) and atomic force microscopy (AFM). XPS analysis revealed that the films are oxygen deficient, and XRD analysis with u–2u scans and rocking curves indicate that the ZnO thin films are highly c-axis oriented. All the films are ultraviolet (UV) sensitive. Sensitivity is maximum for the films deposited at lower temperature. The films deposited at higher temperatures show crystallite sizes of typically 500 nm, a high dark current and minimum photoresponse. In all films we observe persistent photoconductivity decay. More densely packed crystallites and a faster decay in photocurrent is observed for films deposited at lower temperature.

2008
Martins, R. M. S., A. Muecklich, N. Schell, R. J. C. Silva, K. K. Mahesh, and F. M. Braz Fernandes. "Characterization of Sputtered Shape Memory Alloy Ni-Ti Films by Cross-sectional TEM and SEM." Microscopy and Microanalysis. 14 (2008): 85-86. Abstract
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Wang, Jinzhong, Elangovan Elamurugu, Vincent Sallet, Francois Jomard, Alain Lusson, Ana Botelho M. do Rego, Pedro Barquinha, Goncalo Goncalves, Rodrigo Martins, and Elvira Fortunato. "Effect of annealing on the properties of N-doped ZnO films deposited by RF magnetron sputtering." Applied Surface Science. 254 (2008): 7178-7182. AbstractWebsite
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Gavel, Olga Yu., Sergey A. Bursakov, Giulia Di Rocco, Jose Trincao, Ingrid J. Pickering, Graham N. George, Juan J. Calvete, Valery L. Shnyrov, Carlos D. Brondino, Alice S. Pereira, Jorge Lampreia, Pedro Tavares, Jose J. G. Moura, and Isabel Moura. "A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774." JOURNAL OF INORGANIC BIOCHEMISTRY. 102 (2008): 1380-1395. Abstract
Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the ``LID{''} domain. The sequence (129)Cys-X(5)-His-X(15)-Cys-X(2)-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain. (C) 2008 Elsevier Inc. All rights reserved.
Martins, R. M. S., N. Schell, M. Beckers, R. J. C. Silva, K. K. Mahesh, and Braz F. M. Fernandes. "Role of the substrate on the growth of Ni-Ti sputtered thin films." Materials Science and Engineering a-Structural Materials Properties Microstructure and Processing. 481 (2008): 626-629. Abstract
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Martins, R. M. S., N. Schell, A. Muecklich, H. Reuther, M. Beckers, R. J. C. Silva, L. Pereira, and Braz F. M. Fernandes. "Study of graded Ni-Ti shape memory alloy film growth on Si(100) substrate." Applied Physics a-Materials Science & Processing. 91.2 (2008): 291-299. Abstract
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Pauleta, S. R., Y. Lu, C. F. Goodhew, I. Moura, G. W. Pettigrew, and J. A. Shelnutt. "Calcium-dependent heme structure in the reduced forms of the bacterial cytochrome c peroxidase from Paracoccus pantotrophus." Biochemistry. 47 (2008): 5841-5850. AbstractWebsite

This work reports for the first time a resonance Raman study of the mixed-valence and fully reduced forms of Paracoccus pantotrophus bacterial cytochrome c peroxidase. The spectra of the active mixed-valence enzyme show changes in the structure of the ferric peroxidatic heme compared to the fully oxidized enzyme; these differences are observed upon reduction of the electron-transferring heme and upon full occupancy of the calcium site. For the mixed-valence form in the absence of Ca2+, the peroxidatic heme is six-coordinate and low-spin on the basis of the frequencies of the structure-sensitive Raman lines: the enzyme is inactive. With added Ca2+, the peroxidatic heme is five-coordinate high-spin and active. The calcium-dependent spectral differences indicate little change in the conformation of the ferrous electron-transferring heme, but substantial changes in the conformation of the ferric peroxidatic heme. Structural changes associated with Ca2+ binding are indicated by spectral differences in the structure-sensitive marker lines, the out-of-plane low-frequency macrocyclic modes, and the vibrations associated with the heme substituents of that heme. The Ca2+-dependent appearance of a strong gamma(15) saddling-symmetry mode for the mixed-valence form is consistent with a strong saddling deformation in the active peroxidatic heme, a feature seen in the Raman spectra of other peroxidases. For the fully reduced form in the presence of Ca2+, the resonance Raman spectra show that the peroxidatic heme remains high-spin.

Guerreiro, B., C. Silvestre, P. Oliveira, and J. F. Vasconcelos. "{Nonlinear and geometric optimization methods for LADAR calibration}." IEEE International Conference on Robotics and Automation, 2008. 2008. 1406-1411. Abstract
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Guerreiro, B., C. Silvestre, P. Oliveira, and J. F. Vasconcelos. "{Nonlinear and geometric optimization methods for LADAR calibration}." IEEE International Conference on Robotics and Automation, 2008. 2008. 1406-1411. Abstract
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dos Santos, Amarante F. P., and C. Cismasiu. "Comparison Between Two {SMA} Constitutive Models for Seismic Applications." Twelfth Conference on Nonlinear Vibrations, Dynamics, and Multibody Systems. Blacksburg, VA 24061 2008. Abstract
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de Sousa, P. M. P., S. R. Pauleta, D. Rodrigues, M. L. S. Goncalves, G. W. Pettigrew, I. Moura, JJG Moura, and M. M. C. dos Santos. "Benefits of membrane electrodes in the electrochemistry of metalloproteins: mediated catalysis of Paracoccus pantotrophus cytochrome c peroxidase by horse cytochrome c: a case study." Journal of Biological Inorganic Chemistry. 13 (2008): 779-787. AbstractWebsite

A comparative study of direct and mediated electrochemistry of metalloproteins in bulk and membrane-entrapped solutions is presented. This work reports the first electrochemical study of the electron transfer between a bacterial cytochrome c peroxidase and horse heart cytochrome c. The mediated catalysis of the peroxidase was analysed both using the membrane electrode configuration and with all proteins in solution. An apparent Michaelis constant of 66 +/- 4 and 42 +/- 5 mu M was determined at pH 7.0 and 0 M NaCl for membrane and bulk solutions, respectively. The data revealed that maximum activity occurs at 50 mM NaCl, pH 7.0, with intermolecular rate constants of (4.4 +/- 0.5) x 10(6) and (1.0 +/- 0.5) x 10(6) M(-1) s(-1) for membrane-entrapped and bulk solutions, respectively. The influence of parameters such as pH or ionic strength on the mediated catalytic activity was analysed using this approach, drawing attention to the fact that careful analysis of the results is needed to ensure that no artefacts are introduced by the use of the membrane configuration and/or promoters, and therefore the dependence truly reflects the influence of these parameters on the (mediated) catalysis. From the pH dependence, a pK of 7.5 was estimated for the mediated enzymatic catalysis.

Guerreiro, B. J., C. Silvestre, and R. Cunha. "{Terrain Avoidance Model Predictive Control for Autonomous Rotorcraft}." 17th IFAC World Congress. 2008. 1076-1081. Abstract
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Guerreiro, B. J., C. Silvestre, and R. Cunha. "{Terrain Avoidance Model Predictive Control for Autonomous Rotorcraft}." 17th IFAC World Congress. 2008. 1076-1081. Abstract
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Borges, Rui, Isabel Tissot, Ana Isabel Seruya, Rui JC Silva, Sara Fragoso, Belmira Maduro, and Alexandre Pais. "Gilding and silvering surface decoration techniques, and copper provenance studies of the tomb of D. Afonso of Portugal (15th century)." X-Ray Spectrometry. 37.4 (2008): 338-345. Abstract
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Duarte, Filipe J. S., Eurico J. Cabrita, Gernot Frenking, and Gil Santos. "Mechanistic study of intramolecular aldol reactions of dialdehydes." European Journal of Organic Chemistry (2008): 3397-3402. Abstract
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MC, Lanca, Peuckert S, Neagu ER, Gil L, Silva PC, and Marat-MendeS J. "Electrical Properties Studies of a Cork/TetraPak (R)/Paraffin Wax Composite." Advanced Materials Forum Iv. Ed. Baptista APM Sa Alves Malheiros LF Vieira C. F. M. Marques AT, Silva AF. Vol. 587-588. Materials Science Forum, 587-588. 2008. 613-617. Abstract
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Grilo, Antonio, Li Man-Sze, Crave Servane, and Berg van den Roland. "An Enterprise Interoperability Value Proposition Framework." ISPIM. 2008. 201-209. Abstract
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Man-Se, Li, Crave Servane, Grilo Antonio, and Berg van den Roland. "A New Value Proposition of Interoperability for Enterprises to Advance the Frontiers of the European Knowledge Economy." Collaboration and the Knowledge Economy: Issues, Applications, Case Studies, Paul Cunningham and Miriam Cunningham (Eds), IOS Press. 2008. 861-869. Abstract
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Martins, R., P. Barquinha, A. Pimentel, L. Pereira, E. Fortunato, D. Kang, I. Song, C. Kim, J. Park, and Y. Park. "Electron transport in single and multicomponent n-type oxide semiconductors." Thin Solid Films. 516 (2008): 1322-1325. AbstractWebsite
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Pereira, L., P. Barquinha, E. Fortunato, R. Martins, D. Kang, C. J. Kim, H. Lim, I. Song, and Y. Park. "High k dielectrics for low temperature electronics." Thin Solid Films. 516 (2008): 1544-1548. AbstractWebsite
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Martins, R., P. Barquinha, A. Pimentel, L. Pereira, E. Fortunato, D. Kang, I. Song, C. Kim, J. Park, and Y. Park. "{Electron transport in single and multicomponent n-type oxide semiconductors}." Thin Solid Films. 516 (2008): 1322-1325. AbstractWebsite
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Pereira, L., P. Barquinha, E. Fortunato, R. Martins, D. Kang, C. J. Kim, H. Lim, I. Song, and Y. Park. "{High k dielectrics for low temperature electronics}." Thin Solid Films. 516 (2008): 1544-1548. AbstractWebsite
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Martins, R. M. S., N. Schell, A. Mücklich, H. Reuther, M. Beckers, R. J. C. Silva, L. Pereira, and F. M. {Braz Fernandes}. "{Study of graded Ni-Ti shape memory alloy film growth on Si(100) substrate}." Applied Physics A. 91 (2008): 291-299. AbstractWebsite
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Fortunato, E., L. Raniero, L. Silva, A. Goncalves, A. Pimentel, P. Barquinha, H. Aguas, L. Pereira, G. GONCALVES, I. Ferreira, E. Elangovan, and R. Martins. "Highly stable transparent and conducting gallium-doped zinc oxide thin films for photovoltaic applications." Solar Energy Materials and Solar Cells. 92 (2008): 1605-1610. AbstractWebsite
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Fortunato, E., L. Raniero, L. Silva, A. Goncalves, A. Pimentel, P. Barquinha, H. Aguas, L. Pereira, G. GONCALVES, and I. Ferreira. "{Highly stable transparent and conducting gallium-doped zinc oxide thin films for photovoltaic applications}." Solar Energy Materials and Solar Cells. 92 (2008): 1605-1610. AbstractWebsite
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