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2009
Ramos, Luís, Manuel L. Esquível, João T. Mexia, and João L. Silva. "Some Asymptotic Expansions and Distribution Approximations outside a CLT Context." Proceedings of 6th St. Petersburg Workshop on Simulation. 1. 2009. 444-448. Abstract
Some asymptotic expansions non necessarily related to the central limit theorem are discussed. After observing that the smoothing inequality of Esseen implies the proximity, in the Kolmogorov distance sense, of the distributions of the random variables of two random sequences satisfying a sort of general asymptotic relation, two instances of this observation are presented. A first example, partially motivated by the the statistical theory of high precision measurements, is given by a uniform asymptotic approximation to $(g(X+ μ_n))_{n ın \mathbbm{N}}$, where $g$ is some smooth function, $X$ is a random variable having a moment and a bounded density and $(μ_{n})_{n ın \mathbbm{N}}$ is a sequence going to infinity; the multivariate case as well as the proofs and a complete set of references will be published elsewhere. We next present a second class of examples given by a randomization of the interesting parameter in some classical asymptotic formulas, namely, a generic Laplace's type integral, by the sequence $(μ_n X)_{n ın \mathbbm{N}}$, $X$ being a Gamma distributed random variable. Finally, a simulation study of this last example is presented in order to stress the quality of asymptotic approximations proposed.
Faria, D. M. V., V. J. G. Lúcio, and A. M. P. Ramos Strengthening of reinforced concrete flat slabs using post-tensioning with anchorages by bonding. Eds. Fib. Fib symposium–concrete: 21st century superhero, London. London, 2009. Abstract

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Rocha A., Marques M. Manuel B.*. "Synthesis and characterization of novel indole-containing half-crowns as new emissive metal probes." Tetrahedron Lett.. 64 (2009): 7759-7770.
Lourenço, João M., Ricardo J. Dias, João Luís, Miguel Rebelo, and Vasco Pessanha. "Understanding the Behavior of Transactional Memory Applications." Proceedings of the 7th Workshop on Parallel and Distributed Systems: Testing, Analysis, and Debugging (PADTAD'09). {PADTAD}'09. New York, NY, USA: ACM, 2009. 31-39. Abstractpadtad2009.pdf

Transactional memory is a new trend in concurrency control that was boosted by the advent of multi-core processors and the near to come many-core processors. It promises the performance of finer grain with the simplicity of coarse grain threading. However, there is a clear absence of software development tools oriented to the transactional memory programming model, which is confirmed by the very small number of related scientific works published until now. This paper describes ongoing work. We propose a very low overhead monitoring framework, developed specifically for monitoring TM computations, that collects the transactional events into a single log file, sorted in a global order. This framework is then used by a visualization tool to display different types of charts from two categories: statistical charts and thread-time space diagrams. These last diagrams are interactive, allowing to identify conflicting transactions. We use the visualization tool to analyse the behavior of two different, but similar, testing applications, illustrating how it can be used to better understand the behavior of these transactional memory applications.

P. Sanchez, J. Santos, M. Alferez, A. Rashid, L. Fuentes, A. Moreira, J. Araújo, and U. Kulesza. "VML*." Proceedings of the International Conference on Software Language Engineering (SLE). ACM Press, 2009. Abstract

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Silva, Tiago A. N., C. R. Leal, A. Rodrigues, M. F. Bento, and João M. C. Travassos Anisotropic Solutions Applied to a Smart Damper. IV ECCOMAS Thematic Conference on Smart Structures and Materials (SMART'09)., 2009. Abstract
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Roque, A. A., Tiago A. N. Silva, J. M. F. Calado, and J. C. Q. Dias An Approach to Fault Diagnosis of Rolling Bearings. Vol. 4. WSEAS TRANSACTIONS on SYSTEMS and CONTROL, 4.4. World Scientific and Engineering Academy and Society (WSEAS), 2009. Abstract
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Freitas, A. C., F. Ferreira, A. M. Costa, R. Pereira, S. C. Antunes, F. Gonçalves, T. A. P. Rocha-Santos, M. S. Diniz, L. Castro, I. Peres, and A. C. Duarte. "Biological treatment of the effluent from a bleached kraft pulp mill using basidiomycete and zygomycete fungi." Science of the Total Environment. 407 (2009): 3282-3289. AbstractWebsite
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Barbosa, Paulo E. S., Franklin Ramalho, Jorge C. A. de Figueiredo, Antonio D. S. dos Junior, Anikó Costa, and Lu\'ıs Gomes. "Checking Semantics Equivalence of MDA Transformations in Concurrent Systems." J. UCS. 15 (2009): 2196-2224. Abstract
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Oliveira, JP, L. Oliveira, J. Ferreira, I. Bastos, T. Michalak, P. Pankiewicz, B. Nowacki, P. Makosa, and A. Rybarczyk. "Co-design strategy approach of lna, oscillator, and mixer." Electronics and Telecommunications Quarterly. 55 (2009): 585-599. Abstract
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Inácio, D., J. A. Inácio, J. Pina, S. Valtchev, M. Neves, J. Martins, and A. Rodrigues. "Conventional and HTS Disc motor with pole variation control." 2nd International Conference on Power Engineering, Energy and Electrical Drives (POWERENG'2009). 2009. 513-518. Abstract
In this paper, a poly-phase disc motor innovative feeding and control strategy, based on a variable poles approach, and its application to a high temperature superconductor (HTS) disc motor, are presented. The stator windings may be electronically commutated to implement a 2, 4, 6 or 8 poles winding, thus changing the motor's torque?speed characteristics. The motor may be a conventional induction motor with a conductive disc rotor, or a new HTS disc motor, with conventional copper windings at its two iron semi-stators and a HTS disc as a rotor. The conventional induction motor's operation principle is related with the induced electromotive forces in the conductive rotor. Its behaviour, characteristics and modelling through Steinmetz and others theories are well known. The operation principle of the motor with HTS rotor, however, is rather different and is related with vortices' dynamics and pinning characteristics; this is a much more complex process than induction, and its modelling is quite complicated. In this paper, the operation was simulated through finite-elements commercial software (FLUX2D), whereas superconductivity was simulated by the E-J power law. The electromechanical performance of both motor's computed are compared. Considerations about the systems overall efficiency, including cryogenics, are also discussed.
Inácio, D., J. A. Inácio, J. Pina, S. Valtchev, M. Neves, J. Martins, and A. Rodrigues. "Conventional and HTS Disc motor with pole variation control." 2nd International Conference on Power Engineering, Energy and Electrical Drives (POWERENG'2009). 2009. 513-518. Abstract

In this paper, a poly-phase disc motor innovative feeding and control strategy, based on a variable poles approach, and its application to a high temperature superconductor (HTS) disc motor, are presented. The stator windings may be electronically commutated to implement a 2, 4, 6 or 8 poles winding, thus changing the motor's torque?speed characteristics. The motor may be a conventional induction motor with a conductive disc rotor, or a new HTS disc motor, with conventional copper windings at its two iron semi-stators and a HTS disc as a rotor. The conventional induction motor's operation principle is related with the induced electromotive forces in the conductive rotor. Its behaviour, characteristics and modelling through Steinmetz and others theories are well known. The operation principle of the motor with HTS rotor, however, is rather different and is related with vortices' dynamics and pinning characteristics; this is a much more complex process than induction, and its modelling is quite complicated. In this paper, the operation was simulated through finite-elements commercial software (FLUX2D), whereas superconductivity was simulated by the E-J power law. The electromechanical performance of both motor's computed are compared. Considerations about the systems overall efficiency, including cryogenics, are also discussed.

Inácio, D., S. Inácio, J. Pina, S. Valtchev, M. V. Neves, J. F. A. Martins, and A. L. Rodrigues. "Conventional and HTS disc motor with pole variation control." POWERENG 2009 - 2nd International Conference on Power Engineering, Energy and Electrical Drives Proceedings (2009): 513-518. Abstract
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Jacobs, LL, O. Mateus, M. J. Polcyn, AS Schulp, CR Scotese, A. Goswami, KM Ferguson, JA Robbins, DP Vineyard, and AB Neto. "Cretaceous paleogeography, paleoclimatology, and amniote biogeography of the low and mid-latitude South Atlantic Ocean." Bulletin de la Societe Geologique de France. 180 (2009): 333-341. Abstract
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Pereira, R., S. C. Antunes, A. M. M. Gonçalves, S. M. Marques, F. Gonçalves, F. Ferreira, A. C. Freitas, T. A. P. Rocha-Santos, M. S. Diniz, L. Castro, I. Peres, and A. C. Duarte. "The effectiveness of a biological treatment with Rhizopus oryzae and of a photo-Fenton oxidation in the mitigation of toxicity of a bleached kraft pulp mill effluent." Water Research. 43 (2009): 2471-2480. AbstractWebsite
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Diniz, M. S., I. Peres, L. Castro, A. C. Freitas, T. A. P. Rocha-Santos, P. M. Costa, R. Pereira, and A. C. Duarte. "Effects of ECF-Kraft pulp mill effluent treated with fungi (Rhizopus oryzae) on reproductive steroids and liver CYP1A of exposed goldfish (Carassius auratus)." Ecotoxicology. 18 (2009): 1011-1017. AbstractWebsite
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Rozati, S.M.a, Moradi Golshahi Martins Fortunato S. a S. a. "Electrical, structural and optical properties of fluorine-doped zinc oxide thin films: Effect of the solution aging time." Thin Solid Films. 518 (2009): 1279-1282. AbstractWebsite

In this paper ageing effects of the solution used to prepare fluorine-doped ZnO films by the spray pyrolysis technique were investigated, concerning its role on the structure, the electrical and optical properties of films produced. The data reveal that the sheet resistance of the ZnO:F thin film decreases with the age of the solution used, reaching a minimum of 24 Ω/□, after 15 days. On the other hand the optical transmittance increases for films deposited using 6 days aging solution, decreasing afterwards as the aging time increases, being the optical transmittance in the visible range below 55%, for films deposited from solutions 36 days in age. The X-ray diffraction spectra show that the aged films are polycrystalline in nature with a [100] predominant orientation. The data also show that the intensity of (100) peak increases as the time of solution age increases, which is related to an improvement of the film crystallinity. © 2009 Elsevier B.V. All rights reserved.

Rivas, M. G., C. S. Mota, S. R. Pauleta, M. S. P. Carepo, F. Folgosa, S. L. A. Andrade, G. Fauque, AS Pereira, P. Tavares, JJ Calvete, I. Moura, and JJG Moura. "Isolation and characterization of a new Cu-Fe protein from Desulfovibrio aminophilus DSM12254." Journal of Inorganic Biochemistry. 103 (2009): 1314-1322. AbstractWebsite

The isolation and characterization of a new metalloprotein containing Cu and Fe atoms is reported. The as-isolated Cu-Fe protein shows an UV-visible spectrum with absorption bands at 320 nm, 409 nm and 615 nm. Molecular mass of the native protein along with denaturating electrophoresis and mass spectrometry data show that this protein is a multimer consisting of 14 +/- 1 subunits of 15254.3 +/- 7.6 Da. Mossbauer spectroscopy data of the as-isolated Cu-Fe protein is consistent with the presence of [2Fe-2S](2+) centers. Data interpretation of the dithionite reduced protein suggest that the metallic cluster could be constituted by two ferromagnetically coupled [2Fe-2S](+) spin delocalized pairs. The biochemical properties of the Cu-Fe protein are similar to the recently reported molybdenum resistance associated protein from Desulfovibrio, D. alaskensis. Further-more, a BLAST search from the DNA deduced amino acid sequence shows that the Cu-Fe protein has homology with proteins annotated as zinc resistance associated proteins from Desulfovibrio, D. alaskensis, D. vulgaris Hildenborough, D. piger ATCC 29098. These facts suggest a possible role of the Cu-Fe protein in metal tolerance. (C) 2009 Published by Elsevier Inc.

Santos-Silva, T., F. Ferroni, A. Thapper, J. Marangon, P. J. González, A. C. Rizzi, I. Moura, JJG Moura, MJ Romão, and CD Brondino. "Kinetic, structural, and EPR studies reveal that aldehyde oxidoreductase from Desulfovibrio gigas does not need a sulfido ligand for catalysis and give evidence for a direct Mo-C interaction in a biological system." Journal of the American Chemical Society. 131 (2009): 7990-7998. Abstract
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Ferreira, J., I. Bastos, L. Oliveira, JP Oliveira, T. Michalak, P. Pankiewicz, B. Nowacki, P. Makosa, and A. Rybarczyk. "LNA, oscillator and mixer co-design for compact RF-CMOS ISM receivers." Mixed Design of Integrated Circuits & Systems, 2009. MIXDES'09. MIXDES-16th International Conference. IEEE, 2009. 291-295. Abstract
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Oliveira, JP, L. B. Oliveira, J. Ferreira, I. Bastos, T. Michalak, P. Pankiewicz, B. Nowacki, P. Makosa, and A. Rybarczyk. "LNA, Oscillator and Mixer Co-Design Strategy Approach for RF-CMOS." Electronics and Telecommunications Quartely (2009). Abstract
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Rivas, M. G., M. S. P. Carepo, C. S. Mota, M. Korbas, M. C. Durand, A. T. Lopes, CD Brondino, AS Pereira, GN George, A. Dolla, JJG Moura, and I. Moura. "Molybdenum Induces the Expression of a Protein Containing a New Heterometallic Mo-Fe Cluster in Desulfovibrio alaskensis." Biochemistry. 48 (2009): 873-882. AbstractWebsite

The characterization of a novel Mo-Fe protein (MorP) associated with a system that responds to Mo in Desulfovibrio alaskensis is reported. Biochemical characterization shows that MorP is a periplasmic homomultimer of high molecular weight (260 +/- 13 kDa) consisting of 16-18 monomers of 15321.1 +/- 0.5 Da. The UV/visible absorption spectrum of the as-isolated protein shows absorption peaks around 280, 320, and 570 nm with extinction coefficients of 18700, 12800, and 5000 M(-1) cm(-1), respectively. Metal content, EXAFS data and DFT calculations support the presence of a Mo-2S-[2Fe-2S]-2S-Mo cluster never reported before. Analysis of the available genomes from Desulfovibrio species shows that the MorP encoding gene is located downstream of a sensor and a regulator gene. This type of gene arrangement, called two component system, is used by the cell to regulate diverse physiological processes in response to changes in environmemtal conditions. Increase of both gene expression and protein production was observed when cells were cultured in the presence of 45 mu M molybdenum. Involvement of this system in Mo tolerance of sulfate reducing bacteria is proposed.

Martins, R., Leandro Raniero, Luis Pereira, Daniel Costa†, Hugo Aguas, Sonia Pereira, Leonardo Silva, A. Gonçalves, I. Ferreira, and E. Fortunato. "Nanostructured silicon and its application to solar cells, position sensors and thin film transistors." Philosophical Magazine. 89.28-30 (2009): 2699-2721. Abstract
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Martins, R., Leandro Raniero, Luis Pereira, Daniel Costa, Hugo Aguas, Sonia Pereira, Leonardo Silva, A. Gonçalves, I. Ferreira, and E. Fortunato. "Nanostructured silicon and its application to solar cells, position sensors and thin film transistors." Philosophical Magazine. 89 (2009): 2699-2721. Abstract
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Sousa, P., Stanimir Valtchev, Mário Neves, and A. Rodrigues. "A New Open-Loop Control Method for Stepping Motor Driving." 2nd International Conference on Power Engineering, Energy and Electrical Drives (POWERENG'2009). 2009. 605-610.