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2010
Carvalho, Ana Luísa, José Trincão, and Maria João Romão. "X-Ray Crystallography in Drug Discovery." Methods in molecular biology (Clifton, N.J.). Vol. 572. 2010. 31-56. Abstract

Macromolecular X-ray crystallography is an important and powerful technique in drug discovery, used by pharmaceutical companies in the discovery process of new medicines. The detailed analysis of crystal structures of protein-ligand complexes allows the study of the specific interactions of a particular drug with its protein target at the atomic level. It is used to design and improve drugs. The starting point of these studies is the preparation of suitable crystals of complexes with potential ligands, which can be achieved by using different strategies described in this chapter. In addition, an introduction to X-ray crystallography is given, highlighting the fundamental steps necessary to determine the three-dimensional structure of protein-ligand complexes, as well as some of the tools and criteria to validate crystal structures available in databases.

Ribeiro, A. S. M. a, R. C. C. b Monteiro, E. J. R. a Davim, and M. H. V. a Fernandes. "Ash from a pulp mill boiler-Characterisation and vitrification." Journal of Hazardous Materials. 179 (2010): 303-308. AbstractWebsite

The physical, chemical and mineralogical characterisation of the ash resulting from a pulp mill boiler was performed in order to investigate the valorisation of this waste material through the production of added-value glassy materials. The ash had a particle size distribution in the range 0.06-53μm, and a high amount of SiO2 (∼82wt%), which was present as quartz. To favour the vitrification of the ash and to obtain a melt with an adequate viscosity to cast into a mould, different amounts of Na2O were added to act as fluxing agent. A batch with 80wt% waste load melted at 1350°C resulting in a homogeneous transparent green-coloured glass with good workability. The characterisation of the produced glass by differential thermal analysis and dilatometry showed that this glass presents a stable thermal behaviour. Standard leaching tests revealed that the concentration of heavy metals in the leaching solution was lower than those allowed by the Normative. As a conclusion, by vitrification of batch compositions with adequate waste load and additive content it is possible to produce an ash-based glass that may be used in similar applications as a conventional silicate glass inclusively as a building ecomaterial. © 2010 Elsevier B.V.

Pinheiro, C., J. P. Baeta, A. M. Pereira, H. Domingues, and C. P. Ricardo. "Diversity of seed mineral composition of Phaseolus vulgaris L. germplasm." Journal of Food Composition and Analysis. 23 (2010): 319-325. AbstractWebsite

A collection of 155 accessions of ancient Portuguese common beans (Phaseolus vulgaris L) was evaluated in relation to the content of 8 minerals (Zn, Cu, Fe, Mn, Ca, Mg, P and K) important for human nutrition. A high degree of variability for P. Fe, Zn, Cu, Mn and Ca was observed in the collection. Total correlation matrix analysis revealed the existence of two important sets of strong positive correlations (P <= 0.0001), one involving P, Fe, Zn, Cu and protein, and the other Ca and Mn. The principal component analysis showed that Zn, Fe and Cu are highly correlated to the first component (27% of variability) and Mn and Ca to the second component (22% of the variability). The high mineral variability observed in the seeds of this common bean collection could be useful for the selection of cultivars with higher nutrition value and for the improvement of seed nutrition quality traits. (C) 2010 Elsevier Inc. All rights reserved.

Pinheiro, C., J. P. Baeta, A. M. Pereira, H. Domingues, and C. P. Ricardo. "Diversity of seed mineral composition of Phaseolus vulgaris L. germplasm." Journal of Food Composition and Analysis. 23 (2010): 319-325. AbstractWebsite
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Rocha-Santos, T., F. Ferreira, L. Silva, A. C. Freitas, R. Pereira, M. Diniz, L. Castro, I. Peres, and A. C. Duarte. "Effects of tertiary treatment by fungi on organic compounds in a kraft pulp mill effluent." Environmental Science and Pollution Research. 17 (2010): 866-874. AbstractWebsite
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Neagu, E. R., R. M. Neagu, C. J. Dias, M. C. Lanca, P. Inacio, and J. N. Marat-Mendes. "Electrical Method to Study the Weak Molecular Movements at Nanometric Scale in Low Mobility Materials." Advanced Materials Forum V, Pt 1 and 2. Eds. L. G. Rosa, and F. Margarido. Vol. 636-637. Materials Science Forum, 636-637. 2010. 430-436. Abstract

For the characterization of the new materials and for a better understanding of the connection between structure and properties it is necessary to use more and more sensible methods to study molecular movement at nanometric scale. This paper presents the experimental basis for a new electrical method to study the fine molecular movements at nanometric scale in dielectric materials. The method will be applied for polar and non-polar materials characterization. Traditionally, the electrical methods used to study the molecular movements are based on the movements of the dipoles that are parts of the molecules. We have proposed recently a combined protocol to analyze charge injection/extraction, transport, trapping and detrapping in low mobility materials. The experimental results demonstrate that the method can be used to obtain a complex thermogram which contains information about all molecular movements, even at nanoscopic level. Actually during the charging process we are decorating the structure with space charge and during the subsequent heating we are observing an apparent peak and the genuine peaks that are related to charge de-trapping determined by the molecular movement. The method is very sensitive, very selective and allows to determinate the parameters for local and collective molecular movements, including the temperature dependence of the activation energy and the relaxation time.

Neagu, E. R., R. M. Neagu, C. J. Dias, M. C. Lanca, P. Inacio, and J. N. Marat-Mendes. "Electrical Method to Study the Weak Molecular Movements at Nanometric Scale in Low Mobility Materials." Advanced Materials Forum V, Pt 1 and 2. Eds. L. G. Rosa, and F. Margarido. Vol. 636-637. Materials Science Forum, 636-637. 2010. 430-+. Abstract
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Kiazadeh, Asal, Henrique L. Gomes, Ana M. Rosa da Costa, José A. Moreira, Dago M. de Leeuw, and Stefan C. J. Meskers. "Electronic memory devices based on metal nanoparticles." Braga 2010. Abstract
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Ribeiro, T., T. Santos-Silva, V. D. Alves, FMV Dias, A. S. Luís, JAM Prates, LMA Ferreira, MJ Romão, and CMGA Fontes. "Family 42 carbohydrate-binding modules display multiple arabinoxylan-binding interfaces presenting different ligand affinities." Biochimica et Biophysica Acta - Proteins and Proteomics. 1804 (2010): 2054-2062. Abstract
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Martins, R., L. Pereira, P. Barquinha, N. Correia, G. GONCALVES, I. Ferreira, C. Dias, and E. Fortunato. "Floating gate memory paper transistor." Oxide-Based Materials and Devices. Eds. F. H. Teherani, D. C. Look, C. W. Litton, and D. J. Rogers. Vol. 7603. Proceedings of SPIE, 7603. 2010. Abstract
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Martins, R., L. Pereira, P. Barquinha, N. Correia, G. GONCALVES, I. Ferreira, C. Dias, and E. Fortunato. "Floating gate memory paper transistor." Oxide-Based Materials and Devices. Eds. F. H. Teherani, D. C. Look, C. W. Litton, and D. J. Rogers. Vol. 7603. Proceedings of SPIE, 7603. 2010. Abstract
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Felisberto-Rodrigues, C., IC Ribeiro, M. Veloso, C. P. Ricardo, and C. Pinheiro. "Germination under aseptic conditions of different ecotypes of wild beet (Beta vulgaris L. ssp maritima)." Seed Science and Technology. 38 (2010): 517-521. Abstract
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Felisberto-Rodrigues, C., IC Ribeiro, M. Veloso, C. P. Ricardo, and C. Pinheiro. "Germination under aseptic conditions of different ecotypes of wild beet (Beta vulgaris L. ssp maritima)." Seed Science and Technology. 38 (2010): 517-521. Abstract
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Silva, R. M., Jorge Sá Silva, Alberto Cardoso, P. Gil, J. Cecílio, P. Furtado, A. Gomes, C. Sreenan, T. O. Donovan, M. Noonan, A. Klein, Z. Jerzak, U. Roedig, J. Brown, R. Eiras, J. d O, L. Silva, T. Voigt, A. Dunkels, Z. He, L. Wolf, F. Bsching, W. Poettner, J. Li, V. Vassiliou, A. Pitsillides, Z. Zinonos, M. Koutroullos, and C. Ioannou. "GINSENG - Performance Control in Wireless Sensor Networks." 4th Workshop on Real-World Wireless Sensor Networks - REALWSN2010, Colombo, Sri Lanka. n/a 2010. Abstract
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Diniz, M. S., I. Peres, L. Castro, A. C. Freitas, T. A. P. Rocha-Santos, R. Pereira, and A. C. Duarte. "Impact of a secondary treated bleached Kraft pulp mill effluent in both sexes of goldfish (Carassius auratus L.)." Journal of Environmental Science and Health - Part A Toxic/Hazardous Substances and Environmental Engineering. 45 (2010): 1858-1865. AbstractWebsite
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Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, and J. N. Marat-Mendes. "Medium Electric Field Electron Injection/Extraction at Metal-Dielectric Interface." Advanced Materials Forum V, Pt 1 and 2. Eds. L. G. Rosa, and F. Margarido. Vol. 636-637. Materials Science Forum, 636-637. 2010. 437-443. Abstract
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Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, and J. N. Marat-Mendes. "Medium Electric Field Electron Injection/Extraction at Metal-Dielectric Interface." Advanced Materials Forum V, Pt 1 and 2. Eds. L. G. Rosa, and F. Margarido. Vol. 636-637. Materials Science Forum, 636-637. 2010. 437-443. Abstract

The isothermal charging current and the isothermal discharging current in low mobility materials are analyzed either in terms of polarization mechanisms or in terms of charge injection/extraction at the metal-dielectric interface and the conduction current through the dielectric material. We propose to measure the open-circuit isothermal charging and discharging currents just to overpass the difficulties related to the analysis of the conduction mechanisms in dielectric materials. We demonstrate that besides a polarization current there is a current related to charge injection or extraction at the metal-dielectric interface and a reverse current related to the charge trapped into the shallow superficial or near superficial states of the dielectric and which can move at the interface in the opposite way that occurring during injection. Two important parameters can be determined (i) the highest value of the relaxation time for the polarization mechanisms which are involved into the transient current and (ii) the height of the potential barrier W-0 at the metal-dielectric interface. The experimental data demonstrate that there is no threshold field for electron injection/extraction at a metal-dielectric interface.

Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, and J. N. Marat-Mendes. "Medium Electric Field Electron Injection/Extraction at Metal-Dielectric Interface." Advanced Materials Forum V, Pt 1 and 2. Eds. L. G. Rosa, and F. Margarido. Vol. 636-637. Materials Science Forum, 636-637. 2010. 437-443. Abstract
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Inacio, P., J. N. Marat-Mendes, E. Neagu, and C. J. Dias. "Modelling of a Piezoelectric Polymer Film System for Biosensing Applications." Advanced Materials Forum V, Pt 1 and 2. Eds. L. G. Rosa, and F. Margarido. Vol. 636-637. Materials Science Forum, 636-637. 2010. 1206-1211. Abstract
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Santos, H. M., D. Glez-Peña, M. Reboiro-Jato, F. Fdez-Riverola, M. S. Diniz, C. Lodeiro, and J. - L. Capelo-Martínez. "A novel 18O inverse labeling-based workflow for accurate bottom-up mass spectrometry quantification of proteins separated by gel electrophoresis." Electrophoresis. 31 (2010): 3407-3419. AbstractWebsite
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Costa, Anikó, Paulo E. S. Barbosa, Lu\'ıs Gomes, Franklin Ramalho, Jorge C. A. de Figueiredo, and Antonio D. S. dos Junior. "Properties Preservation in Distributed Execution of Petri Nets Models." DoCEIS. 2010. 241-250. Abstract
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Pina, J. M., P. Suárez, Ventim M. Neves, A. Álvarez, and A. L. Rodrigues. "Reverse engineering of inductive fault current limiters." Journal of Physics: Conference Series. 234 (2010): 1-9. AbstractWebsite

The inductive fault current limiter is less compact and harder to scale to high voltage networks than the resistive one. Nevertheless, its simple construction and mechanical robustness make it attractive in low voltage grids. Thus, it might be an enabling technology for the advent of microgrids, low voltage networks with dispersed generation, controllable loads and energy storage. A new methodology for reverse engineering of inductive fault current limiters based on the independent analysis of iron cores and HTS cylinders is presented in this paper. Their electromagnetic characteristics are used to predict the devices' hysteresis loops and consequently their dynamic behavior. Previous models based on the separate analysis of the limiters' components were already derived, e.g. in transformer like equivalent models. Nevertheless, the assumptions usually made may limit these models' application, as shown in the paper. The proposed methodology obviates these limitations. Results are validated through simulations.

Barbosa, Paulo E. S., Franklin Ramalho, Jorge Figueiredo, Anikó Costa, Lu\'ıs Gomes, and Antônio Junior. "Semantic Equations for Formal Models in the Model-Driven Architecture." DoCEIS. 2010. 251-260. Abstract
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Ferreira, I. M. P. L. V., O. Pinho, D. Monteiro, S. Faria, S. Cruz, A. Perreira, A. C. Roque, and P. Tavares. "Short communication: Effect of kefir grains on proteolysis of major milk proteins." Journal of Dairy Science. 93 (2010): 27-31. AbstractWebsite

The effect of kefir grains on the proteolysis of major milk proteins in milk kefir and in a culture of kefir grains in pasteurized cheese whey was followed by reverse phase-HPLC analysis. The reduction of kappa-, alpha-, and beta-caseins (CN), alpha-lactalbumin (alpha-LA), and beta-lactoglobulin (beta-LG) contents during 48 and 90 h of incubation of pasteurized milk (100 mL) and respective cheese whey with kefir grains (6 and 12 g) at 20 degrees C was monitored. Significant proteolysis of alpha-LA and kappa-, alpha-, and beta-caseins was observed. The effect of kefir amount (6 and 12 g/100 mL) was significant for alpha-LA and alpha- and beta-CN. alpha-Lactalbumin and beta-CN were more easily hydrolyzed than alpha-CN. No significant reduction was observed with respect to beta-LG concentration for 6 and 12 g of kefir in 100 mL of milk over 48 h, indicating that no significant proteolysis was carried out. Similar results were observed when the experiment was conducted over 90 h. Regarding the cheese whey kefir samples, similar behavior was observed for the proteolysis of alpha-LA and beta-LG: alpha-LA was hydrolyzed between 60 and 90% after 12 h (for 6 and 12 g of kefir) and no significant beta-LG proteolysis occurred. The proteolytic activity of lactic acid bacteria and yeasts in kefir community was evaluated. Kefir milk prepared under normal conditions contained peptides from proteolysis of alpha-LA and kappa-, alpha-, and beta-caseins. Hydrolysis is dependent on the kefir: milk ratio and incubation time. beta-Lactoglobulin is not hydrolyzed even when higher hydrolysis time is used. Kefir grains are not appropriate as adjunct cultures to increase beta-LG digestibility in whey-based or whey-containing foods.