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2013
Marques, Ricardo, Hervé Paulino, Fernando Alexandre, and Pedro D. Medeiros. "Algorithmic Skeleton Framework for the Orchestration of GPU Computations." Euro-Par 2013 Parallel Processing - 19th International Conference, Euro-Par 2013, Aachen, Germany, August 26-30, 2013. Proceedings. Ed. Dieter Mey an Felix Wolf, Bernd Mohr. Lecture Notes in Computer Science. Aachen, Germany: Springer-Verlag, 2013. 874-885. Abstract

The Graphics Processing Unit (GPU) is gaining popular- ity as a co-processor to the Central Processing Unit (CPU). However, harnessing its capabilities is a non-trivial exercise that requires good knowledge of parallel programming, more so when the complexity of these applications is increasingly rising. Languages such as StreamIt [1] and Lime [2] have addressed the offloading of composed computations to GPUs. However, to the best of our knowledge, no support exists at library level. To this extent, we propose Marrow, an algorithmic skeleton frame- work for the orchestration of OpenCL computations. Marrow expands the set of skeletons currently available for GPU computing, and enables their combination, through nesting, into complex structures. Moreover, it introduces optimizations that overlap communication and computa- tion, thus conjoining programming simplicity with performance gains in many application scenarios. We evaluated the framework from a perfor- mance perspective, comparing it against hand-tuned OpenCL programs. The results are favourable, indicating that Marrow’s skeletons are both flexible and efficient in the context of GPU computing.

Monteiro, Rui, João Araújo, Vasco Amaral, Miguel Goulão, and Pedro Patrício. "Adding Interoperability to Requirements Models." Software Quality Professional Journal. 15.4 (2013): 16-27. Abstractsqpv15i4monteiro.pdfWebsite

Complex software systems inherently require a variety of models used in all of the development stages. A general concern is to guarantee consistency and traceability among these models. Model-driven development (MDD) can help tackle this concern. Although MDD has been mainly used in later development stages, it is relatively unexplored in requirements engineering. In this article, the authors discuss how to
leverage MDD to support consistency and traceability in requirements modeling. To illustrate this, they apply MDD to goaloriented requirements engineering (GORE) by making bidirectional mappings between two well-known GORE approaches (i* and KAOS). The result is an interoperable framework that can be used to migrate from one goal model to another through automatic model transformations, keeping consistency and traceability, so requirements engineers can make the best use of each approach.

Costa, Gonçalo, Rui Micaelo, and Adelino Ferreira Análise dos critérios de aceitação/rejeição do caderno de encargos tipo obra para pavimentação. 17.º Congreso Ibero-Latinoamericano del Asfalto. Antigua, Guatemala, 2013.
Santos, Susana, Nuno Lapa, Andreia Alves, João Morais, and Benilde Mendes. "Analytical methods and validation for determining trace elements in red wines." Journal of Environmental Science and Health, Part B: Pesticides, Food Contaminants, and Agricultural Wastes. 48.5 (2013): 364-375. AbstractWebsite

The objective of this work is to quantify As, Hg, Cd, Ni and Pb in Portuguese red wines. First, the methods for the quantification of trace elements in red wines were validated. Several pre-treatments were compared, namely a pre-digestion process with HNO3, a pre-oxidation step with H2O2, and a spiking step of wine samples with a known concentration of the trace elements analyzed. Except for As, it was determined that the quantification of the trace elements does not require a pre-digestion process with HNO3. For all of the trace elements analyzed, a pre-oxidation step with H2O2 may enable an accurate quantification. The techniques chosen for the quantification of trace elements were hydride generation atomic absorption spectrometry (HGAAS) for As and Hg, electrothermal atomic absorption spectrometry (ETAAS) for Cd, and flame atomic absorption spectrometry (FAAS) for Ni and Pb. In the second stage of this work, 25 Portuguese red wines spanning all of the red wine-producing regions were analyzed for all of the five trace elements referred to above. Only Cd and Pb have shown concentrations above the limit values defined by the “Organization Internationale de la Vigne et du Vin.” The Target Hazard Quotient (THQ) equation was used to determine in which wine-producing regions that wine consumption can be a problem for public health in terms of the concentrations of the five trace elements analyzed. THQ values have indicated that for the universe of the 25 red wines analyzed no region produces wines that can pose problems for public health, when the Portuguese red wine standard consumption is considered.

Simões, F., F. Lopes, A. Ferreira, and R. Micaelo Aplicação a Portugal do novo método de dimensionamento de pavimentos rodoviários da AASHTO. 7º Congresso Rodoviário Português. Lisboa, 2013.
Kullberg, J. C., R. B. Rocha, A. F. Soares, J. Rey, P. Terrinha, A. C. Azerêdo, P. Callapez, Duarte, L.V., M. C. Kullberg, L. Martins, J. R. Miranda, C. Alves, J. Mata, J. Madeira, O. Mateus, M. Moreira, and C. R. Nogueira. "A Bacia Lusitaniana: Estratigrafia, Paleogeografia e Tectónica." Geologia de Portugal no contexto da Ibéria. Volume II. Ed. Terrinha Kullberg A. P. J. C. and Dias, R. Araújo. Lisboa: Escolar Editora, 2013. 195-350.kullberg_et_al_2013_a_bacia_lusitaniana.pdf
Matos, Pedro, Rui Micaelo, and Cátia Duarte Bituminous mastic behaviour at mixing and paving temperatures: filler and bitumen influence analysis. 5th EATA Conference. Braunschweig, Germany, 2013.
Bianucci, Giovanni, Ismael Miján, Olivier Lambert, Klaas Post, and Octávio Mateus. "Bizarre fossil beaked whales (Odontoceti, Ziphiidae) fished from the Atlantic Ocean floor off the Iberian Peninsula." Geodiversitas. 35.1 (2013): 105-153. Abstractbianucci_et_al_2013_fossil_beaked_whales_iberian_peninsula.pdf

Forty partial fossil skulls belonging to beaked whales (Cetacea, Odontoceti, Ziphiidae) were collected by trawling and long-line fishing on Neogene (probably Late Early to Middle Miocene) layers of the Atlantic floor off the coasts of Portugal and Spain (Asturias and Galicia). e systematic study of the most diagnostic Iberian specimens, those preserving the rostrum and the dorsal part of the cranium, led to the recognition of two new genera (Globicetus n. gen. and Imocetus n. gen.) and four new species (Choneziphius leidyi n. sp., G. hiberus n. gen., n. sp., I. piscatus n. gen., n. sp., and Tusciziphius atlanticus n. sp.).
Based on the matrix of a previous work, the phylogenetic analysis places all the new taxa in the subfamily Ziphiinae Gray, 1850. More fragmentary specimens are tentatively referred to the genera Caviziphius Bianucci & Post, 2005 and Ziphirostrum du Bus, 1868. Among these new ziphiids, extremely bizarre skull morphologies are observed. In G. hiberus n. gen., n. sp. the proximal portion of the rostrum bears a voluminous premaxillary spheroid. In T. atlanticus n. sp. a medial premaxillary bulge is present on the rostrum; together with asymmetric
rostral maxillary eminences at the rostrum base, this bulge displays various degrees of elevation in different specimens, which may be interpreted as sexual dimorphism. Specimens of I. piscatus n. gen., n. sp. bear two sets of even crests: spur-like rostral maxillary crests and longitudinal maxillary crests laterally bordering a wide and long facial basin. A preliminary macroscopic observation of these elements indicates very dense bones, with a compactness comparable with that of cetacean ear bones. Questioning their function, the high medial rostral elements (the premaxillary spheroid of G. hiberus n. gen., n. sp. and the medial bulge of T. atlanticus n. sp.) remind the huge rostral maxillary crests of adult males of the extant Hyperoodon ampullatus (Forster, 1770). In the latter, the crests are very likely related to head-butting. However, they are made of much more spongy bone than in the fossil taxa studied here, and therefore possibly better mechanically suited for facing impacts. Other interpretations of these unusual bone specializations, related to deep-diving (ballast) and echolocation (sound reflection), fail to explain the diversity of shapes and the hypothetical sexual dimorphism observed in at least part of the taxa. e spur-like rostral maxillary crests and long maxillary crests limiting the large facial basin in I. piscatus n. gen., n. sp. and the excrescences on the maxilla at the rostrum base in Choneziphius spp. are instead interpreted as areas of origin for rostral and facial muscles, acting on the nasal passages, blowhole, and melon. From a palaeobiogeographic point of view, the newly described taxa further emphasize the differences in the North Atlantic (including Iberian Peninsula) and South African Neogene ziphiid faunal lists. Even if the stratigraphic context is poorly understood, leaving open the question of the geological age for most of the dredged specimens, these differences in the composition of cold to temperate northern and southern hemisphere fossil ziphiid faunas may be explained by a warm-water equatorial barrier.

Jacobs, LL, TS Myers, AO Goncalves, JF Graf, B. F. Jacobs, JW KAPPELMAN, O. Mateus, M. J. Polcyn, ET RASBURY, and DP Vineyard Cabinda revisited: age and environment of new Cenozoic vertebrate fossils from northern Angola. Geological Society of America Abstracts with Programs. Vol. 45, No. 7, p.0., 2013.
Marques, Pedro Faustino, Carlos Chastre, and Ângela Nunes. "Carbonation service life modelling of RC structures for concrete with Portland and blended cements." Cement and Concrete Composites. 37 (2013): 171-184. Abstractmarques_chastre_et_al._2013.pdfWebsite

The presented work aims at studying the modelling of long term performance of concrete compositions with different proportions of clinker as regards the diffusion of CO2 in concrete – carbonation. The replacing constituents of clinker that will be part of the binder in each concrete composition are limestone filler and low calcium fly ash (FA). The used percentage of FA by weight of binder was of 50%. Concrete compositions were made following standard prescribed requirements to attain service lives of 50 and 100 years as regards concrete performance against reinforcing steel corrosion. Test results of compressive strength and carbonation depth are reported at different curing ages of 28, 90, 180 and 365 days. Carbonation results were used for the implementation of modelling equations in order to estimate the design service life regarding reinforcing steel corrosion. Two performance-based methods were used: safety factor method and probabilistic method, and their results compared with the traditional prescriptive approach. At the age of 28 days the composition with OPC is the only one that reaches the target periods of 50 or 100 years. For the probabilistic method, different curing age results were analysed. For the tested results at 90, 180 and 365 days of age the reliability of some of the compositions with blended cements is within the minimum required, although still far from the higher performance of concrete with OPC.

Mateus, O., and E. Tschopp. "Cathetosaurus as a valid sauropod genus and comparisons with Camarasaurus." Journal of Vertebrate Paleontology, Program and Abstracts, 2013 (2013): 173.mateus__tschopp_2013_cathetosaurs_camarasaurus__svp_meeting_abstracts_213.pdf
Araújo, J., M. Kinyon, and A. Malheiro. "A characterization of adequate semigroups by forbidden subsemigroups." Proc. R. Soc. Edinb., Sect. A, Math.. 143 (2013): 1115-1122. AbstractWebsite

A semigroup is amiable if there is exactly one idempotent in each ℛ*-class and in each ℒ*-class. A semigroup is adequate if it is amiable and if its idempotents commute. We characterize adequate semigroups by showing that they are precisely those amiable semigroups that do not contain isomorphic copies of two particular non-adequate semigroups as subsemigroups.

Barbosa, Rui, Diogo Dias, Nuno Lapa, Helena Lopes, and Benilde Mendes. "Chemical and ecotoxicological properties of size fractionated biomass ashes." Fuel Processing Technology. 109 (2013): 124-132. AbstractWebsite

The main aim of this work was to study the chemical and ecotoxicological properties of ashes produced in a biomass boiler of a pulp and paper industry and evaluate possible differences depending on the particle size of bottom and fly ashes. This industry produces electricity by burning eucalyptus and pine bark in a bubbling fluidized bed combustor. Bottom and fly ashes and their size fractions, obtained by sieving, were analysed for a set of metals and leaching behaviour. The eluates were also submitted to ecotoxicological characterization, using five indicators. The highest concentrations of metals and metalloids were found in the lower particle size fractions of bottom and fly ashes. However, generally, it could not be observed any specific releasing pattern of metals depending on the particle size, except for fly ashes in which the releasing rate of some earth and alkali-earth metals seemed to increase for lower particle size fractions. No specific pattern of the ecotoxicity levels could be associated to the different particle size fractions of ashes. The fractions of bottom ashes with 4,000–10,000 μm and > 10,000 μm have presented the lowest ecotoxicity levels. All the samples were classified as ecotoxic, except the fraction of bottom ashes > 10,000 μm.

Tschopp, E., and O. Mateus. "Clavicles, interclavicles, gastralia, and sternal ribs in sauropod dinosaurs: new reports from Diplodocidae and their morphological, functional and evolutionary implications." Journal of Anatomy. 222 (2013): 321-340. Abstracttschopp__mateus_2013_clavicles_interclavicles_gastralia_and_sternal_ribs_in_diplodocid.pdfWebsite

Ossified gastralia, clavicles and sternal ribs are known in a variety of reptilians, including dinosaurs. In sauropods, however, the identity of these bones is controversial. The peculiar shapes of these bones complicate their identification, which led to various differing interpretations in the past. Here we describe different elements from the chest region of diplodocids, found near Shell, Wyoming, USA. Five morphotypes are easily distinguishable: (A) elongated, relatively stout, curved elements with a spatulate and a bifurcate end resemble much the previously reported sauropod clavicles, but might actually represent interclavicles; (B) short, L-shaped elements, mostly preserved as a symmetrical pair, probably are the real clavicles, as indicated by new findings in diplodocids; (C) slender, rod-like bones with rugose ends are highly similar to elements identified as sauropod sternal ribs; (D) curved bones with wide, probably medial ends constitute the fourth morphotype, herein interpreted as gastralia; and (E) irregularly shaped elements, often with extended rugosities, are included into the fifth morphotype, tentatively identified as sternal ribs and/or intercostal elements. To our knowledge, the bones previously interpreted as sauropod clavicles were always found as single bones, which sheds doubt on the validity of their identification. Various lines of evidence presented herein suggest they might actually be interclavicles – which are single elements. This would be the first definitive evidence of interclavicles in dinosauromorphs. Previously supposed interclavicles in the early sauropodomorph Massospondylus or the theropods Oviraptor and Velociraptor were later reinterpreted as clavicles or furculae. Independent from their identification, the existence of the reported bones has both phylogenetic and functional significance. Their presence in non-neosauropod Eusauropoda and Flagellicaudata and probable absence in rebbachisaurs and Titanosauriformes shows a clear character polarity. This implicates that the ossification of these bones can be considered plesiomorphic for Sauropoda. The proposed presence of interclavicles in sauropods may give further support to a recent study, which finds a homology of the avian furcula with the interclavicle to be equally parsimonious to the traditional theory that furcula were formed by the fusion of the clavicles. Functional implications are the stabilizing of the chest region, which coincides with the development of elongated cervical and caudal vertebral columns or the use of the tail as defensive weapon. The loss of ossified chest bones coincides with more widely spaced limbs, and the evolution of a wide-gauge locomotor style.

Rybarczyk, Y., Vernay D., Rybarczyk P., Lebret M.C., Duhaut D., Lemasson G., Pesty S., and Lucidarme P. "COCHISE project: an augmented service dog for disabled people." 12th conference of the Association for the Advancement of Assistive Technology in Europe. Vilamoura, Portugal 2013. copy.pdf
Vernay, D., Lebret M.C., Rybarczyk P., and Rybarczyk Y. "Collaboration hommes, chiens et robots : quels scenarios ?" Interactions et Intercompréhension : une Approche Comparative. Eds. M. Grandgeorge, B. LePevedic, and F. Pugniere. Fernelmont: E.M.E, 2013. 189-200.copy.pdf
Correia, Isabel, Teresa Melo, and Francisco Saldanha-da-Gama. "Comparing classical performance measures for a multi-period, two-echelon supply chain network design problem with sizing decisions." Computers and Industrial Engineering. 64 (2013): 366-380. Abstract

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Cunha, Jácome, João Paulo Fernandes, Jorge Mendes, and João Saraiva. "Complexity Metrics for Spreadsheet Models." The 13th International Conference on Computational Science and Its Applications. Eds. B. Murgante, and et al. Vol. 7972. ICCSA'13, 7972. LNCS, 2013. 459-474. Abstracticcsa-sq13.pdf

This paper proposes a set of metrics for the assessment of the complexity of models defining the business logic of spreadsheets. This set can be considered the first step in the direction of building a quality standard for spreadsheet models, that is still to be defined. The computation of concrete metric values has further been integrated under a well-established model-driven spreadsheet development environment, providing a framework for the analysis of spreadsheet models under spreadsheets themselves.

Matos, P., R. Micaelo, and C. Duarte Comportamento do mastique betuminoso a temperaturas elevadas: influência do fíler e do betume. 7º Congresso Rodoviário Português. Lisboa, 2013.
Lourenço, Luís Miguel, João Costa Seco, and Francisco Martins Concurrent Typed Intermediate Language. Object Oriented Programming Languages and Systems at 28th Symposium On Applied Computing. Coimbra, 2013.
Mateus, O. "Crocodylomorphs from the Mesozoic of Portugal and a new skull of eusuchian from the Late Cretaceous." 2013 Hwaseong International Dinosaurs Expedition Symposium, pp.66-67. Hwaseong, South Korea 2013. Abstractmateus_2013_crocodylomorphs_portugal_new_skull.pdf

The diversity of fossil crocodylomorphs in Portugal is high, with occurrence as old as Mystriosaurus (=Steneosaurus) bollensis from the Lower Jurassic. The Late Jurassic forms are the better documented, and include the following taxa: Machimosaurus hugii, Lisboasaurus estesi Seiffert, 1973, Lusitanisuchus mitrocostatus Seiffert, 1975; Schwarz & Fechner 2004, Theriosuchus guimarotae Schwarz and Salisbury 2005, Cf. Alligatorium, Goniopholis baryglyphaeus, and a crocodylomorph-like eggs in dinosaur nests (Mateus et al., 1998; Ricqlès et al., 2001). From the Lower Cretaceous were reported a few dinosaurs but its record is strangely scarce in crocodylomorphs (Mateus et al., 2011). The Upper Cretaceous crocodiles show a large diversity, but it is mostly based in fragmentary material that require revision, such as “Crocodylus” blavieri? Grey from the Upper Campanian - Maastrichtian of Viso, near Aveiro (initially reported by Sauvage 1897-98), Goniopholis cf. crassidens Owen 1841 and Oweniasuchus pulchelus Jonet 1981. Moreover there is a fascinating, but poorly understood, crocodylomorph diversity in the Cenomanian of Portugal, documented by fragmentary specimens that have been doubtfully assigned to Thoracosaurus Leidy 1852 of the Middle Cenomanian of Cacém, to the nomen dubium Oweniasuchus lusitanicus Sauvage 1897-98 (interpreted as a mesosuchian goniopholid) based in a fragmentary mandible from the Campanian-Maastrichtian, and also from the Middle Cenomanian of Portugal, Buffetaut and Lauverjat (1978) report an fragmentary unidentified possible dyrosaurid from Nazaré. All this specimens are too incomplete to be compared with the specimen here described. In contrast, Cenozoic crocodiles of Portugal are often known after complete skulls and several individuals. The taxa list include Iberosuchus macrodon (Lower to Middle Eocene), Tomistoma calaritanus (Early Miocene) and T. lusitanica (Burdigalian-Helvetian), and Diplocynodon sp. (Antunes, 1961, 1987, 1994).
At least, two different morphotypes of crocodylomorph eggs from the Late Jurassic of Lourinhã Formation are also known.
A new specimen here reported of crocodile based in a partial skull and mandible (ML1818) from the Uppermost Middle Cenomanian platform carbonates of Baixo Mondego, west central Portugal (Tentúgal Fm., Callapez, 2004). The taxon is phylogenetically positioned as a basal Eusuchia, due to the choanae enclosed by the pterygoid, and closely related with stem Crocodylia and Borealosuchus. This specimen represents the only well documented and valid eusuchian species in the Cenomanian of Europe and is the oldest representative of an eusuchian crocodylomorph, with the exception for the Barremian Hylaeochampsa vectiana.

Clement, Thibault, Antonio Pinho Ramos, Miguel Fernandez Ruiz, and Aurelio Muttoni. "Design for punching of prestressed concrete slabs." Structural Concrete. 14 (2013): 157-167. Abstract

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Fernandes, R. M. R. P., J. A. G. Chousal, M. F. S. F. de Moura, and J. Xavier. "Determination of cohesive laws of composite bonded joints under mode II loading." Composites Part B: Engineering. 52 (2013): 269-274. Abstract

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VIULA FARIA, Duarte M., Válter J. G. LUCIO, A. Pinho Ramos, and José R. MARTI-VARGAS. "Discussion: Pull-out and push-in tests of bonded steel strands." Magazine of concrete research. 65 (2013): 1128-1131. AbstractWebsite

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M. M. R. A.; Braz, L. F. C.; Monteiro, R. C. C.;, and et al. "Effect of Phosphogypsum on the Clinkerization Temperature of Portland Cement Clincker." Advanced Materials Forum Vi. 730-732 (2013): 94-99 .