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2023
Hammami, Imen, Sílvia Rodrigues Gavinho, Ana Sofia Pádua, Maria Carmo do Lança, João Paulo Borges, Jorge Carvalho Silva, Isabel Sá-Nogueira, Suresh Kumar Jakka, and Manuel Pedro Fernandes Graça. "Extensive investigation on the effect of niobium insertion on the physical and biological properties of 45S5 bioactive glass for dental implant." 24.6 (2023): 5244. Abstract
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Dias, Inês J. G., Sofia A. Pádua, Eduardo A. Pires, João PMR Borges, Jorge C. Silva, and Carmo M. Lança. "Hydroxyapatite-Barium Titanate Biocoatings Using Room Temperature Coblasting." 13.4 (2023): 579. Abstract
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Meunier, Emmanuelle, Filipa Dias, João Fonte, Alexandre Lima, Alexandra Rodrigues, Carlo Bottaini, Rui JC Silva, João P. Veiga, Manuel F. C. Pereira, and Elin Figueiredo. "Later prehistoric tin mining in the Ervedosa mine (Vinhais, Portugal): evidence and context." 15.4 (2023): 43. AbstractWebsite

This paper presents a comprehensive study of the evidence for ancient tin mining at the Ervedosa mine (Vinhais, Portugal). The geological context of the site indicates a rich cassiterite (SnO2) deposit, which was subject to mining in the twentieth century. Some ancient mining and ore processing stone tools were recovered during the twentieth century mining operations, namely one hammer, one pounder, one flat anvil and five small tools used both as pounders and crushing anvils, evidencing prehistoric mining activities. XRF and SEM–EDS chemical analyses were performed on primary and secondary cassiterite samples from the mining site, demonstrating the abundance and chemical heterogeneity of the tin (Sn) ores. The stone tools can be ascribed to Bronze Age or, at the latest, Early Iron Age (2nd millennium to the first half of 1st millennium BCE) by comparison with similar tools from other Iberian and European archaeological contexts. High-resolution photogrammetric 3D models of the tools are made available in this study. The historical descriptions of the findings and the research made on the technical archives about the mine allowed correlating the tools to mining in a primary context, focused on rich quartz veins in granitic or greisen bedrock, rather than mining in a secondary context. XRF and SEM–EDS analyses performed on the stone material and on surface adherences support their identification as specific types of hard rocks, such as granite, amphibolite and quartzite, and allowed the detection of Sn-rich adherent particles, confirming their use for Sn-material processing. The potential relation between the cassiterite resources and the local later prehistoric (Bronze Age to Early Iron Age) settlement pattern is also discussed. The results raise awareness and provide relevant data about the existence of tin mining in primary contexts during later prehistoric times in the NW Iberian Peninsula.

López-Rojas, Víctor, Lars B. Clemmensen, Jesper Milàn, Oliver Wings, Nicole Klein, and Octávio Mateus. "A new phytosaur species (Archosauriformes) from the Upper Triassic of Jameson Land, central East Greenland." Journal of Vertebrate PaleontologyJournal of Vertebrate Paleontology (2023): e2181086. Abstracta_new_phytosaur_species_archosauriformes_from_the_upper_triassic_of_jameson_land_central_east_greenland.pdfWebsite

ABSTRACTHerein we describe phytosaurs from thin fluvial overbank sandstones of the Upper Triassic Malmros Klint Formation of the Fleming Fjord Group (central East Greenland). The new sample includes more than 150 disarticulated bones and teeth from small to large specimens belonging to at least four individuals. The fossils mostly consist of teeth and postcranial elements and permit the recognition of a new species of Mystriosuchus, M. alleroq, diagnosed by an L-shaped quadratojugal whose anterior suture trends anterodorsally and a tripartite degree of heterodonty. Humeral diaphyseal histology of one specimen reveals a fairly compact cortex that surrounds a cancellous medullary region followed by a remodeling zone containing scattered secondary osteons. Primary bone tissue is parallel-fibred with a moderate to low vascular density. The cortex is cyclically interrupted by distinct growth marks indicating a seasonal environment. A change in growth rate from moderate to low is documented within the outer cortex, indicating that at least this individual was close to somatic maturity. Mystriosuchus has formerly been known as an exclusively European taxon. The new findings support the European faunal influence in East Greenland during the Late Triassic inferred from other taxa such as temnospondyls and archosaurs. The mid-late Norian age of European Mystriosuchus suggests an additional age constraint for the vertebrate-bearing portion of the Malmros Klint Formation.

Trovão, Filipa, Viviana G. Correia, Frederico M. Lourenço, Diana O. Ribeiro, Ana Luísa Carvalho, Angelina S. Palma, and Benedita A. Pinheiro. "The structure of a Bacteroides thetaiotaomicron carbohydrate-binding module provides new insight into the recognition of complex pectic polysaccharides by the human microbiome." (2023): 100084. AbstractWebsite

TheBacteroides thetaiotaomicronhas developed a consortium of enzymes capable of overcoming steric constraints and degrading, in a sequential manner, the complex rhamnogalacturonan II (RG-II) polysaccharide. BT0996 protein acts in the initial stages of the RGII depolymerisation, where its two catalytic modules remove the terminal monosaccharides from RG-II side chains A and B. BT0996 is modular and has three putative carbohydrate-binding modules (CBMs) for which the roles in the RG-II degradation are unknown. Here, we present the characterisation of themoduleat the C-terminal domain, which we designated BT0996C. The high-resolution structure obtained by X-ray crystallography reveals that the protein displays a typical β-sandwich fold with structural similarity to CBMs assigned to families 6 and 35. The distinctive features are: 1) the presence of several charged residues at the BT0996-C surface creating a large, broad positive lysine-rich patch that encompasses the putative binding site; and 2) the absence of the highly conserved binding-site signatures observed in CBMs from families 6 and 35, such as region A tryptophan and region C asparagine. These findings hint at a binding mode of BT0996-C not yet observed in its homologues. In line with this, carbohydrate microarrays and microscale thermophoresis show the ability of BT0996-C to bind α1-4-linked polygalacturonic acid, and that electrostatic interactions are essential for the recognition of the anionic polysaccharide. The results support the hypothesis that BT0996-C may have evolved to potentiate the action of BT0996 catalytic modules on the complex structure of RG-II by binding to the polygalacturonic acid backbone sequence.

Pinheiro, Daniel, André Fernandes, César Godinho, Jorge Machado, Gonçalo Baptista, Filipe Grilo, Luís Sustelo, Jorge M. Sampaio, Pedro Amaro, Roberta G. Leitão, José P. Marques, Fernando Parente, Paul Indelicato, Miguel de Avillez, José Paulo Santos, and Mauro Guerra. "K- and L-shell theoretical fluorescence yields for the Fe isonuclear sequence." Radiation Physics and Chemistry. 203 (2023): 110594. Abstract

In this work, we present K- and L- shell fluorescence yield values of the full isonuclear sequence of Fe ions, using a state-of-the-art multiconfiguration Dirac–Fock approach. These results may be of importance for spectral fitting and plasma modeling, both in laboratory and astrophysical studies, where Fe is an important benchmark element. The K-shell fluorescence yields were found to be very similar up to the removal of 14 electrons.

de Oliveira, Ivone Regina, Isabela dos Santos Gonçalves, Kennedy Wallace dos Santos, Maria Carmo Lança, Tânia Vieira, Jorge Carvalho Silva, Ibrahim Fatih Cengiz, Rui Luís Reis, Joaquim Miguel Oliveira, and João Paulo Miranda Ribeiro Borges. "Biocomposite Macrospheres Based on Strontium-Bioactive Glass for Application as Bone Fillers." ACS Materials Au. 3 (2023): 646-658. AbstractWebsite

Traditional bioactive glass powders are typically composed of irregular particles that can be packed into dense configurations presenting low interconnectivity, which can limit bone ingrowth. The use of novel biocomposite sphere formulations comprising bioactive factors as bone fillers are most advantageous, as it simultaneously allows for packing the particles in a 3-dimensional manner to achieve an adequate interconnected porosity, enhanced biological performance, and ultimately a superior new bone formation. In this work, we develop and characterize novel biocomposite macrospheres of Sr-bioactive glass using sodium alginate, polylactic acid (PLA), and chitosan (CH) as encapsulating materials for finding applications as bone fillers. The biocomposite macrospheres that were obtained using PLA have a larger size distribution and higher porosity and an interconnectivity of 99.7%. Loose apatite particles were observed on the surface of macrospheres prepared with alginate and CH by means of soaking into a simulated body fluid (SBF) for 7 days. A dense apatite layer was formed on the biocomposite macrospheres' surface produced with PLA, which served to protect PLA from degradation. In vitro investigations demonstrated that biocomposite macrospheres had minimal cytotoxic effects on a human osteosarcoma cell line (SaOS-2 cells). However, the accelerated degradation of PLA due to the degradation of bioactive glass may account for the observed decrease in SaOS-2 cells viability. Among the biocomposite macrospheres, those composed of PLA exhibited the most promising characteristics for their potential use as fillers in bone tissue repair applications.

Li, De Biao, and Vítor H. Fernandes. "Endomorphisms of semigroups of oriented transformations." Semigroup Forum (DOI 10.1007/s00233-022-10325-y; Online 2 Dec 2022). 106 (2023): 184-210. AbstractWebsite

In this paper, we characterize the monoid of endomorphisms of the semigroup of all oriented full transformations of a finite chain, as well as the monoid of endomorphisms of the semigroup of all oriented partial transformations and the monoid of endomorphisms of the semigroup of all oriented partial permutations of a finite chain. Characterizations of the monoids of endomorphisms of the subsemigroups of all orientation-preserving transformations of the three semigroups aforementioned are also given. In addition, we compute the number of endomorphisms of each of these six semigroups.

Gomes, G., H. Rebelo, V. Lúcio, C. Cismasiu, and J. Mingote. "Experimental Research and Development on Blast Resistant Structures." Advances on Testing and Experimentation in Civil Engineering, Springer Tracts in Civil Engineering. Switzerland: Springer Nature, 2023. 1-20.
de Gomes, Gabriel Jesus, Valter José Guia da Lúcio, Corneliu Cismasiu, and José Luis Mingote. "Experimental Validation and Numerical Analysis of a High-Performance Blast Energy-Absorbing System for Building Structures." Buildings. 13.601 (2023): 1-20.
Hammami, Imen, Sílvia R. Gavinho, Ana Sofia Pádua, Maria Carmo do Lança, João Paulo Borges, and Jorge Carvalho Silva. "Extensive Investigation on the Effect of Niobium Insertion on the Physical and Biological Properties of 45S5 Bioactive Glass for Dental Implant." International Journal of Molecular Sciences. 24.6 (2023): 5244-5263.
Crespo, Vicente D., Cristina Sequero López, Maria Rios, Darío Estraviz López, Arturo Gamonal, Roberta Martino, Marc Riccetto, Pedro Callapez, Paulo Legoinha, and Octávio Mateus. "Revisiting the classical small mammal assemblage from the Eocene site of Silveirinha: a fresh look at old collections." XI Congresso Nacional de Geologia: Geociências e Desafios globaisAt: Universidade de CoimbraVolume: Livro de Resumos, págs 85-86. Coimbra 2023. Abstractcrespov_etal_xicng2023_silveirinha.pdf

O sítio de Silveirinha é uma das localidades de mamíferos mais conhecidas da Paleontologia do Cenozoico de Portugal e da Europa em geral. Graças à sua rica e diversificada associação de mamíferos, com mais de 30 taxa, foi posicionado no Eocénico inferior (início do Ypresiano, MP7, ca. 55,8 M.a.), sendo o local mais antigo da Europa desta Época, devido à presença única de taxa típicos do Paleocénico superior, juntamente com outras espécies já características do Eocénico inferior. Este estudo irá rever o material de pequenos mamíferos deste sítio, conservado na coleção clássica da Universidade Nova de Lisboa, a fim de fazer uma actualização taxonómica à luz das publicações mais recentes.

Dias, I. J. G. J. G., A. S. S. Pádua, E. Pires, J. P. M. R. Borges, Jorge C. Silva, and MC Lança. "TSDC and surface potential measurements of charged hydroxyapatite/BaTiO 3 biocoatings deposited by CoBlast." ISE19-19th Int Symp on Electrets, 18-22 Sept. Linz, Austria: Johannes Kepler Univ., 2023. 77. Abstract

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Carvalho, Fernanda, Maria Margarida R. .A. . Lima, Elissavet Kavoulaki, Nuno Leal, Joaquim Simão, CARLOS GALHANO, Hugo Águas, Giuseppina Padeletti, and João Pedro Veiga. "Decay products of historical cements from the Palace of Knossos, Crete, Greece." Journal of Cultural Heritage. 64 (2023): 113-119. AbstractWebsite

The Palace of Knossos, located on the island of Crete, Greece, is one of Europe's most important archaeological sites, serving as a testament to the Minoan civilization. Situated near the Mediterranean Sea, it is in close proximity to the seaport, airport, and industrial areas. Decay products commonly found in historical monuments within or near urban areas, such as black crusts and salt efflorescence, are also prevalent at the Palace of Knossos. To better understand the characteristics of the type of deterioration compounds found on cement in historical reconstruction zones, as well as their possible relationship with factors influencing the deterioration process, a multi-analytical approach was designed for the study of these materials. The results indicate that the black crusts primarily consist of gypsum and carbonaceous matter. However, the efflorescence salts are predominantly composed of thenardite instead of halite, despite the palace's proximity to the coastal area. These results may contribute to ongoing and future maintenance and preservation efforts for the monument.

Dias, Ana Margarida Gonçalves Carvalho, Inês Pimentel Moreira, Iana Lychko, Cátia Lopes Soares, Arianna Nurrito, Arménio Jorge Moura Barbosa, Viviane Lutz-Bueno, Raffaele Mezzenga, Ana Luísa Carvalho, Ana Sofia Pina, and Ana Cecília Afonso Roque. "Hierarchical self-assembly of a reflectin-derived peptide." Frontiers in Chemistry. 11 (2023). AbstractWebsite

Reflectins are a family of intrinsically disordered proteins involved in cephalopod camouflage, making them an interesting source for bioinspired optical materials. Understanding reflectin assembly into higher-order structures by standard biophysical methods enables the rational design of new materials, but it is difficult due to their low solubility. To address this challenge, we aim to understand the molecular self-assembly mechanism of reflectin’s basic unit—the protopeptide sequence YMDMSGYQ—as a means to understand reflectin’s assembly phenomena. Protopeptide self-assembly was triggered by different environmental cues, yielding supramolecular hydrogels, and characterized by experimental and theoretical methods. Protopeptide films were also prepared to assess optical properties. Our results support the hypothesis for the protopeptide aggregation model at an atomistic level, led by hydrophilic and hydrophobic interactions mediated by tyrosine residues. Protopeptide-derived films were optically active, presenting diffuse reflectance in the visible region of the light spectrum. Hence, these results contribute to a better understanding of the protopeptide structural assembly, crucial for the design of peptide- and reflectin-based functional materials.

Pinheiro, A., A. Ruivo, J. Rocha, M. Ferro, JV Pinto, J. Deuermeier, T. Mateus, A. Santa, MJ Mendes, R. Martins, S. Gago, C. A. T. Laia, and H. Águas. "Parylene-Sealed Perovskite Nanocrystals Down-Shifting Layer for Luminescent Spectral Matching in Thin Film Photovoltaics." Nanomaterials. 13 (2023). AbstractWebsite
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Ramos, António Pinho, Brisid Isufi, Rui Marreiros, Dario Coronelli, Teresa Netti, Marco Lamperti Tornaghi, Georgios Tsionis, and Aurelio Muttoni. "Seismic Performance of Strengthened Slab-Column Connections in a Full-Scale Test." Journal of Earthquake Engineering. 27 (2023): 2299-2318. AbstractWebsite
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Menda, U. D., G. Ribeiro, J. Deuermeier, E. López, D. Nunes, S. Jana, I. Artacho, R. Martins, I. Mora-Seró, MJ Mendes, and I. Ramiro. "Thermal-Carrier-Escape Mitigation in a Quantum-Dot-In-Perovskite Intermediate Band Solar Cell via Bandgap Engineering." ACS Photonics. 10 (2023): 3647-3655. AbstractWebsite
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Pinheiro, Ana, Andreia Ruivo, Marta Ferro, Joana Vaz Pinto, Jonas Deuermeier, Tiago Mateus, Ana Santa, Manuel J. Mendes, Rodrigo Martins, Sandra Gago, C. A. T. Laia, and Á. Hugo. "{Parylene-Sealed Perovskite Nanocrystals Down-Shifting Layer for Luminescent Spectral Matching in Thin Film Photovoltaics}." (2023). Abstract
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Duval, Louis, Rοbert Loetzsch, Heinrich Beyer, Dariusz Banaś, Perla Dergham, Jan Glorius, Robert E. Grisenti, Mauro Guerra, Alexandre Gumberidze, Pierre-Michel Hillenbrand, Paweł Jagodziński, Emily Lamour, Yuri Litvinov, Jorge Machado, Gerhard Paulus, Nancy Paul, Nikolaos Petridis, Jose-Paulo Santos, Marius Scheidel, Ragandeep S. Sidhu, Uwe Spillmann, Sébastien Steydli, Karol Szary, Sergiy Trotsenko, Ingo Uschmann, Günther Weber, Thomas Stöhlker, Paul Indelicato, and Martino Trassinelli. "{X-ray spectroscopy of few-electron uranium ions for tests of QED}." Proceedings of FAIR next generation scientists - 7th Edition Workshop — PoS(FAIRness2022). Vol. 419. 2023. 012. Abstract
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2022
Guerra-Guimarães, Leonor, Carla Pinheiro, Maria Fátima de Martins, Inês Diniz, Andreia Loureiro, Maria Machado Lavado Céu do da Silva, and John D¿Auria. "METABOLICoffee - How primary metabolism modulates Coffea spp. - Hemileia vastatrix interactions? (Poster)." Wageningen 2022. 162. Abstract
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Guerra-Guimarães, Leonor, Carla Pinheiro, Maria Fátima de Martins, I. Diniz, and Andreia Loureiro METABOLICoffee ¿ How primary metabolism modulates Coffea spp. - Hemileia vastatrix interactions?., 2022. Abstract
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Madeira, Ricardo MD, Tânia Vieira, Jorge C. Silva, Ivone R. Oliveira, João P. Borges, M. M. R. A. Lima, and Carmo M. Lança Piezoelectric Calcium Modified Barium Titanate for Bone Regeneration. Vol. 8. Materials Proceedings 2022, Vol. 8, Page 121, 8. Basel Switzerland: Multidisciplinary Digital Publishing Institute, 2022. Abstract

Solid state reaction was used to produced barium titanate modified with calcium (BCT) showing the presence of the piezoelectric tetragonal phase after sintering at 1350 °C. Bioglass 45S5 (BG) was synthetized by sol-gel route. From these two materials and commercial hydroxyapatite (HAp) were obtained composites. The BG produced showed some cytotoxic character that was weakened by passivation. All other materials were non-cytotoxic. Contact polarization at constant temperature was chosen composites polarization. Electric/dielectric properties were evaluated by thermally stimulated depolarization currents (TSDC). The material showed bioactivity with the composite with BCT/BG/HAp 90/5/5 (wt%) showing increased bioactivity. In vitro test showed high proliferation rates for the composites.

Oliveira, IR, AM Barbosa, KW Santos, MC Lança, M. M. R. A. Lima, T. Vieira, JC Silva, and J. P. Borges. "Properties of strontium-containing BG 58S produced by alkali-mediated sol-gel process." Ceramics International (2022). AbstractWebsite

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Amaro, P., A. Adamczak, Abdou M. Ahmed, L. Affolter, F. D. Amaro, P. Carvalho, T. L. Chen, L. M. P. Fernandes, M. Ferro, D. Goeldi, T. Graf, M. Guerra, T. W. Hänsch, C. A. O. Henriques, Y. C. Huang, P. Indelicato, O. Kara, K. Kirch, A. Knecht, F. Kottmann, Y. W. Liu, J. Machado, M. Marszalek, R. D. P. Mano, C. M. B. Monteiro, F. Nez, J. Nuber, A. Ouf, N. Paul, R. Pohl, E. Rapisarda, J. M. F. dos Santos, J. P. Santos, P. A. O. C. Silva, L. Sinkunaite, J. T. Shy, K. Schuhmann, S. Rajamohanan, A. Soter, L. Sustelo, D. Taqqu, L. B. Wang, F. Wauters, P. Yzombard, M. Zeyen, and A. Antognini. "Laser excitation of the 1s-hyperfine transition in muonic hydrogen." SciPost Physics. 13 (2022). Abstract

The CREMA collaboration is pursuing a measurement of the ground-state hyperfine splitting (HFS) in muonic hydrogen (μp) with 1 ppm accuracy by means of pulsed laser spectroscopy to determine the two-photon-exchange contribution with 2×10-4 relative accuracy. In the proposed experiment, the μp atom undergoes a laser excitation from the singlet hyperfine state to the triplet hyperfine state, then is quenched back to the singlet state by an inelastic collision with a H2 molecule. The resulting increase of kinetic energy after the collisional deexcitation is used as a signature of a successful laser transition between hyperfine states. In this paper, we calculate the combined probability that a μp atom initially in the singlet hyperfine state undergoes a laser excitation to the triplet state followed by a collisional-induced deexcitation back to the singlet state. This combined probability has been computed using the optical Bloch equations including the inelastic and elastic collisions. Omitting the decoherence effects caused by the laser bandwidth and collisions would overestimate the transition probability by more than a factor of two in the experimental conditions. Moreover, we also account for Doppler effects and provide the matrix element, the saturation fluence, the elastic and inelastic collision rates for the singlet and triplet states, and the resonance linewidth. This calculation thus quantifies one of the key unknowns of the HFS experiment, leading to a precise definition of the requirements for the laser system and to an optimization of the hydrogen gas target where μp is formed and the laser spectroscopy will occur.