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2024
Carvalho, Fernanda, Ana Nunes, Ana Pagará, Isabel Costeira, Teresa Pereira da Silva, Maria Margarida Rolim Augusto Lima, and João Pedro Veiga. "Historical lime-based flooring mortars from the Church of Santa Maria de Alcobaça monastery (12th century), Portugal: A multi-analytical approach." Archaeometry. n/a (2024). AbstractWebsite

Abstract The Monastery of Alcobaça houses in reserve the ceramic tiles that adorned the floor of the church's apse. These tiles were removed during rehabilitation works and many preserve part of their original fixing mortars. A comprehensive analysis of 21 samples was conducted using a multi-analytical approach (X-ray fluorescence, X-ray diffraction, scanning electron microscopy–energy-dispersive X-ray spectroscopy, μ-Raman spectroscopy, thermogravimetry–differential thermal analysis, optical microscopy, and colorimetry). Results suggest compositional variations in the samples from the back and sides of the ceramic tiles; however, the mineralogy and general characteristics of the aggregates remained consistent between the samples and are coherent with the local geology, suggesting a shared historical origin.

López-Rojas, Víctor, Simão Mateus, João Marinheiro, Octávio Mateus, and Eduardo Puértolas-Pascual. "A new goniopholidid crocodylomorph from the Late Jurassic of Portugal." Palaeontologia Electronica. 27.1 (2024): 1-33. Abstractgoniopholididae_1316_compressed.pdf

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Coutinho, Mathilda L., João Pedro Veiga, Andreia Ruivo, Teresa Pereira da Silva, Silvia Bottura-Scardina, Maria Margarida R. A. Lima, Carlos Pereira, Ana Carvalho Dias, Luis Dias, Peter Vandenabeele, and José C. Roseiro. "Characterization of Tableware from Fábrica de Loiça de Sacavém—Linking Analytical and Documental Research." Minerals. 14 (2024). AbstractWebsite

Fábrica de Loiça de Sacavém (ca. 1858–1994) was among the first to produce white earthenware in Portugal, becoming one of the country’s leading ceramic manufacturers during the late 19th to early 20th centuries. Research on white earthenware has accompanied the growing interest in post-industrial archaeology but is still poorly explored compared to more ancient ceramic productions. This study focused on the ceramic body, glazes, and colourants of tableware produced by Fábrica de Loiça de Sacavém during the first 50 years of its activity (1859–1910). A multi-analytical approach was selected to investigate the chemical and mineralogical composition of the ceramic body, glaze, and pigments using optical microscopy, variable-pressure scanning electron microscope energy-dispersive X-ray spectroscopy (VP-SEM-EDS), μ-Raman spectroscopy, μ-X-ray Diffraction (μ-XRD), and reflectance spectroscopy (hyperspectral image analysis). The studied tableware was produced with a Ca-poor siliceous–aluminous white earthenware ceramic body covered with transparent alkali lead or lead borosilicate glaze, and most colourants were complex Cr-based pigments. These results are in agreement with the little documental evidence from this period found in the manufacturer’s archives.

Viñas-Ospino, Adriana, Ana Rita Jesus, Alexandre Paiva, Maria J. Esteve, Ana Frígola, Jesús Blesa, and Daniel López-Malo. "Comparison of green solvents for the revalorization of orange by-products: Carotenoid extraction and in vitro antioxidant activity." Food Chemistry. 442 (2024): 138530. AbstractWebsite

Orange peels contain a considerable number of bioactive compounds such as carotenoids, that can be used as ingredients in high-value products. The aim of this study was to compare orange peel extracts obtained with different green solvents (vegetable oils, fatty acids, and deep eutectic solvents (DES)). In addition, the chemical characterization of a new hydrophobic DES formed by octanoic acid and l-proline (C8:Pro) was performed. The extracts were compared in terms of carotenoid extraction, antioxidant activity by three methods, color, and environmental impact. The results confirmed that the mixture of C8:Pro is a DES and showed the highest carotenoid extraction (46.01 µg/g) compared to hexane (39.28 µg/g). The antioxidant activity was also the highest in C8:Pro (2438.8 µM TE/mL). Finally, two assessment models were used to evaluate the greenness and sustainability of the proposed extractions. These results demonstrated the potential use of orange peels in the circular economy and industry.

Haque, S., M. Alexandre, A. T. Vicente, K. Li, C. S. Schuster, S. Yang, H. Águas, R. Martins, R. A. S. Ferreira, and MJ Mendes. "Photon shifting and trapping in perovskite solar cells for improved efficiency and stability." Light: Science and Applications. 13 (2024). AbstractWebsite
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2023
Dias, Inês J. G., Sofia A. Pádua, Eduardo A. Pires, João PMR Borges, Jorge C. Silva, and Carmo M. Lança. "Hydroxyapatite-Barium Titanate Biocoatings Using Room Temperature Coblasting." Crystals 2023, Vol. 13, Page 579. 13 (2023): 579. AbstractWebsite

The use of orthopaedic and dental implants is expanding as a consequence of an ageing population and also due to illness or trauma in younger age groups. The implant must be biocompatible, bioactive and interact favourably with the recipient's bone, as rapid osseointegration is key to success. In this work, Ti-6Al-4V plates were coated using the CoBlastTM technique, with hydroxyapatite (HAp) and HAp/BaTiO3 (barium titanate, BT) non-piezoelectric cubic nanopowders (HAp/cBT) and piezoelectric tetragonal micropowders (HAp/tBT). The addition of BT, a piezoelectric ceramic, is a strategy to accelerate osseointegration by using surface electric charges as cues for cells. For comparison with commercial coatings, plates were coated with HAp using the plasma spray technique. Using XRD and FTIR, both plasma spray and CoBlastTM coatings showed crystalline HAp and no presence of by-products. However, the XRD of the plasma-sprayed coatings revealed the presence of amorphous HAp. The average surface roughness was close to the coatings' thickness (≈5 $μ$m for CoBlastTM and ≈13 $μ$m for plasma spray). Cytotoxicity assays proved that the coatings are biocompatible. Therefore, it can be concluded that for HAp-based coatings, CoBlastTM is a viable alternative to plasma spray, with the advantage of facilitating room temperature addition of other ceramics, like piezoelectric BaTiO3.

Machado, Jorge, Nancy Paul, Gabrielle Soum-Sidikov, Louis Duval, Stéphane Macé, Robert Loetzsch, Martino Trassinelli, and Paul Indelicato. "Absolute measurement of the relativistic magnetic dipole transition in He-like sulfur." Physical Review A. 107 (2023): 032821. AbstractWebsite
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Silva, José Malanho, Linda Cerofolini, Ana Luísa Carvalho, Enrico Ravera, Marco Fragai, Giacomo Parigi, Anjos L. Macedo, Carlos F. G. C. Geraldes, and Claudio Luchinat. "Elucidating the concentration-dependent effects of thiocyanate binding to carbonic anhydrase." 244 (2023): 112222. AbstractWebsite

Many proteins naturally carry metal centers, with a large share of them being in the active sites of several enzymes. Paramagnetic effects are a powerful source of structural information and, therefore, if the native metal is paramagnetic, or it can be functionally substituted with a paramagnetic one, paramagnetic effects can be used to study the metal sites, as well as the overall structure of the protein. One notable example is cobalt(II) substitution for zinc(II) in carbonic anhydrase. In this manuscript we investigate the effects of sodium thiocyanate on the chemical environment of the metal ion of the human carbonic anhydrase II. The electron paramagnetic resonance (EPR) titration of the cobalt(II) protein with thiocyanate shows that the EPR spectrum changes from A-type to C-type on passing from 1:1 to 1:1000-fold ligand excess. This indicates the occurrence of a change in the electronic structure, which may reflect a sizable change in the metal coordination environment in turn caused by a modification of the frozen solvent glass. However, paramagnetic nuclear magnetic resonance (NMR) data indicate that the metal coordination cage remains unperturbed even in 1:1000-fold ligand excess. This result proves that the C-type EPR spectrum observed at large ligand concentration should be ascribed to the low temperature at which EPR measurements are performed, which impacts on the structure of the protein when it is destabilized by a high concentration of a chaotropic agent.

Hammami, Imen, Sílvia Rodrigues Gavinho, Ana Sofia Pádua, Maria Carmo do Lança, João Paulo Borges, Jorge Carvalho Silva, Isabel Sá-Nogueira, Suresh Kumar Jakka, and Manuel Pedro Fernandes Graça. "Extensive investigation on the effect of niobium insertion on the physical and biological properties of 45S5 bioactive glass for dental implant." 24.6 (2023): 5244. Abstract
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Dias, Inês J. G., Sofia A. Pádua, Eduardo A. Pires, João PMR Borges, Jorge C. Silva, and Carmo M. Lança. "Hydroxyapatite-Barium Titanate Biocoatings Using Room Temperature Coblasting." 13.4 (2023): 579. Abstract
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Meunier, Emmanuelle, Filipa Dias, João Fonte, Alexandre Lima, Alexandra Rodrigues, Carlo Bottaini, Rui JC Silva, João P. Veiga, Manuel F. C. Pereira, and Elin Figueiredo. "Later prehistoric tin mining in the Ervedosa mine (Vinhais, Portugal): evidence and context." 15.4 (2023): 43. AbstractWebsite

This paper presents a comprehensive study of the evidence for ancient tin mining at the Ervedosa mine (Vinhais, Portugal). The geological context of the site indicates a rich cassiterite (SnO2) deposit, which was subject to mining in the twentieth century. Some ancient mining and ore processing stone tools were recovered during the twentieth century mining operations, namely one hammer, one pounder, one flat anvil and five small tools used both as pounders and crushing anvils, evidencing prehistoric mining activities. XRF and SEM–EDS chemical analyses were performed on primary and secondary cassiterite samples from the mining site, demonstrating the abundance and chemical heterogeneity of the tin (Sn) ores. The stone tools can be ascribed to Bronze Age or, at the latest, Early Iron Age (2nd millennium to the first half of 1st millennium BCE) by comparison with similar tools from other Iberian and European archaeological contexts. High-resolution photogrammetric 3D models of the tools are made available in this study. The historical descriptions of the findings and the research made on the technical archives about the mine allowed correlating the tools to mining in a primary context, focused on rich quartz veins in granitic or greisen bedrock, rather than mining in a secondary context. XRF and SEM–EDS analyses performed on the stone material and on surface adherences support their identification as specific types of hard rocks, such as granite, amphibolite and quartzite, and allowed the detection of Sn-rich adherent particles, confirming their use for Sn-material processing. The potential relation between the cassiterite resources and the local later prehistoric (Bronze Age to Early Iron Age) settlement pattern is also discussed. The results raise awareness and provide relevant data about the existence of tin mining in primary contexts during later prehistoric times in the NW Iberian Peninsula.

López-Rojas, Víctor, Lars B. Clemmensen, Jesper Milàn, Oliver Wings, Nicole Klein, and Octávio Mateus. "A new phytosaur species (Archosauriformes) from the Upper Triassic of Jameson Land, central East Greenland." Journal of Vertebrate PaleontologyJournal of Vertebrate Paleontology (2023): e2181086. Abstracta_new_phytosaur_species_archosauriformes_from_the_upper_triassic_of_jameson_land_central_east_greenland.pdfWebsite

ABSTRACTHerein we describe phytosaurs from thin fluvial overbank sandstones of the Upper Triassic Malmros Klint Formation of the Fleming Fjord Group (central East Greenland). The new sample includes more than 150 disarticulated bones and teeth from small to large specimens belonging to at least four individuals. The fossils mostly consist of teeth and postcranial elements and permit the recognition of a new species of Mystriosuchus, M. alleroq, diagnosed by an L-shaped quadratojugal whose anterior suture trends anterodorsally and a tripartite degree of heterodonty. Humeral diaphyseal histology of one specimen reveals a fairly compact cortex that surrounds a cancellous medullary region followed by a remodeling zone containing scattered secondary osteons. Primary bone tissue is parallel-fibred with a moderate to low vascular density. The cortex is cyclically interrupted by distinct growth marks indicating a seasonal environment. A change in growth rate from moderate to low is documented within the outer cortex, indicating that at least this individual was close to somatic maturity. Mystriosuchus has formerly been known as an exclusively European taxon. The new findings support the European faunal influence in East Greenland during the Late Triassic inferred from other taxa such as temnospondyls and archosaurs. The mid-late Norian age of European Mystriosuchus suggests an additional age constraint for the vertebrate-bearing portion of the Malmros Klint Formation.

Trovão, Filipa, Viviana G. Correia, Frederico M. Lourenço, Diana O. Ribeiro, Ana Luísa Carvalho, Angelina S. Palma, and Benedita A. Pinheiro. "The structure of a Bacteroides thetaiotaomicron carbohydrate-binding module provides new insight into the recognition of complex pectic polysaccharides by the human microbiome." (2023): 100084. AbstractWebsite

TheBacteroides thetaiotaomicronhas developed a consortium of enzymes capable of overcoming steric constraints and degrading, in a sequential manner, the complex rhamnogalacturonan II (RG-II) polysaccharide. BT0996 protein acts in the initial stages of the RGII depolymerisation, where its two catalytic modules remove the terminal monosaccharides from RG-II side chains A and B. BT0996 is modular and has three putative carbohydrate-binding modules (CBMs) for which the roles in the RG-II degradation are unknown. Here, we present the characterisation of themoduleat the C-terminal domain, which we designated BT0996C. The high-resolution structure obtained by X-ray crystallography reveals that the protein displays a typical β-sandwich fold with structural similarity to CBMs assigned to families 6 and 35. The distinctive features are: 1) the presence of several charged residues at the BT0996-C surface creating a large, broad positive lysine-rich patch that encompasses the putative binding site; and 2) the absence of the highly conserved binding-site signatures observed in CBMs from families 6 and 35, such as region A tryptophan and region C asparagine. These findings hint at a binding mode of BT0996-C not yet observed in its homologues. In line with this, carbohydrate microarrays and microscale thermophoresis show the ability of BT0996-C to bind α1-4-linked polygalacturonic acid, and that electrostatic interactions are essential for the recognition of the anionic polysaccharide. The results support the hypothesis that BT0996-C may have evolved to potentiate the action of BT0996 catalytic modules on the complex structure of RG-II by binding to the polygalacturonic acid backbone sequence.

Pinheiro, Daniel, André Fernandes, César Godinho, Jorge Machado, Gonçalo Baptista, Filipe Grilo, Luís Sustelo, Jorge M. Sampaio, Pedro Amaro, Roberta G. Leitão, José P. Marques, Fernando Parente, Paul Indelicato, Miguel de Avillez, José Paulo Santos, and Mauro Guerra. "K- and L-shell theoretical fluorescence yields for the Fe isonuclear sequence." Radiation Physics and Chemistry. 203 (2023): 110594. Abstract

In this work, we present K- and L- shell fluorescence yield values of the full isonuclear sequence of Fe ions, using a state-of-the-art multiconfiguration Dirac–Fock approach. These results may be of importance for spectral fitting and plasma modeling, both in laboratory and astrophysical studies, where Fe is an important benchmark element. The K-shell fluorescence yields were found to be very similar up to the removal of 14 electrons.

de Oliveira, Ivone Regina, Isabela dos Santos Gonçalves, Kennedy Wallace dos Santos, Maria Carmo Lança, Tânia Vieira, Jorge Carvalho Silva, Ibrahim Fatih Cengiz, Rui Luís Reis, Joaquim Miguel Oliveira, and João Paulo Miranda Ribeiro Borges. "Biocomposite Macrospheres Based on Strontium-Bioactive Glass for Application as Bone Fillers." ACS Materials Au. 3 (2023): 646-658. AbstractWebsite

Traditional bioactive glass powders are typically composed of irregular particles that can be packed into dense configurations presenting low interconnectivity, which can limit bone ingrowth. The use of novel biocomposite sphere formulations comprising bioactive factors as bone fillers are most advantageous, as it simultaneously allows for packing the particles in a 3-dimensional manner to achieve an adequate interconnected porosity, enhanced biological performance, and ultimately a superior new bone formation. In this work, we develop and characterize novel biocomposite macrospheres of Sr-bioactive glass using sodium alginate, polylactic acid (PLA), and chitosan (CH) as encapsulating materials for finding applications as bone fillers. The biocomposite macrospheres that were obtained using PLA have a larger size distribution and higher porosity and an interconnectivity of 99.7%. Loose apatite particles were observed on the surface of macrospheres prepared with alginate and CH by means of soaking into a simulated body fluid (SBF) for 7 days. A dense apatite layer was formed on the biocomposite macrospheres' surface produced with PLA, which served to protect PLA from degradation. In vitro investigations demonstrated that biocomposite macrospheres had minimal cytotoxic effects on a human osteosarcoma cell line (SaOS-2 cells). However, the accelerated degradation of PLA due to the degradation of bioactive glass may account for the observed decrease in SaOS-2 cells viability. Among the biocomposite macrospheres, those composed of PLA exhibited the most promising characteristics for their potential use as fillers in bone tissue repair applications.

Li, De Biao, and Vítor H. Fernandes. "Endomorphisms of semigroups of oriented transformations." Semigroup Forum (DOI 10.1007/s00233-022-10325-y; Online 2 Dec 2022). 106 (2023): 184-210. AbstractWebsite

In this paper, we characterize the monoid of endomorphisms of the semigroup of all oriented full transformations of a finite chain, as well as the monoid of endomorphisms of the semigroup of all oriented partial transformations and the monoid of endomorphisms of the semigroup of all oriented partial permutations of a finite chain. Characterizations of the monoids of endomorphisms of the subsemigroups of all orientation-preserving transformations of the three semigroups aforementioned are also given. In addition, we compute the number of endomorphisms of each of these six semigroups.

Gomes, G., H. Rebelo, V. Lúcio, C. Cismasiu, and J. Mingote. "Experimental Research and Development on Blast Resistant Structures." Advances on Testing and Experimentation in Civil Engineering, Springer Tracts in Civil Engineering. Switzerland: Springer Nature, 2023. 1-20.
de Gomes, Gabriel Jesus, Valter José Guia da Lúcio, Corneliu Cismasiu, and José Luis Mingote. "Experimental Validation and Numerical Analysis of a High-Performance Blast Energy-Absorbing System for Building Structures." Buildings. 13.601 (2023): 1-20.
Hammami, Imen, Sílvia R. Gavinho, Ana Sofia Pádua, Maria Carmo do Lança, João Paulo Borges, and Jorge Carvalho Silva. "Extensive Investigation on the Effect of Niobium Insertion on the Physical and Biological Properties of 45S5 Bioactive Glass for Dental Implant." International Journal of Molecular Sciences. 24.6 (2023): 5244-5263.
Crespo, Vicente D., Cristina Sequero López, Maria Rios, Darío Estraviz López, Arturo Gamonal, Roberta Martino, Marc Riccetto, Pedro Callapez, Paulo Legoinha, and Octávio Mateus. "Revisiting the classical small mammal assemblage from the Eocene site of Silveirinha: a fresh look at old collections." XI Congresso Nacional de Geologia: Geociências e Desafios globaisAt: Universidade de CoimbraVolume: Livro de Resumos, págs 85-86. Coimbra 2023. Abstractcrespov_etal_xicng2023_silveirinha.pdf

O sítio de Silveirinha é uma das localidades de mamíferos mais conhecidas da Paleontologia do Cenozoico de Portugal e da Europa em geral. Graças à sua rica e diversificada associação de mamíferos, com mais de 30 taxa, foi posicionado no Eocénico inferior (início do Ypresiano, MP7, ca. 55,8 M.a.), sendo o local mais antigo da Europa desta Época, devido à presença única de taxa típicos do Paleocénico superior, juntamente com outras espécies já características do Eocénico inferior. Este estudo irá rever o material de pequenos mamíferos deste sítio, conservado na coleção clássica da Universidade Nova de Lisboa, a fim de fazer uma actualização taxonómica à luz das publicações mais recentes.

Dias, I. J. G. J. G., A. S. S. Pádua, E. Pires, J. P. M. R. Borges, Jorge C. Silva, and MC Lança. "TSDC and surface potential measurements of charged hydroxyapatite/BaTiO 3 biocoatings deposited by CoBlast." ISE19-19th Int Symp on Electrets, 18-22 Sept. Linz, Austria: Johannes Kepler Univ., 2023. 77. Abstract

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Carvalho, Fernanda, Maria Margarida R. .A. . Lima, Elissavet Kavoulaki, Nuno Leal, Joaquim Simão, CARLOS GALHANO, Hugo Águas, Giuseppina Padeletti, and João Pedro Veiga. "Decay products of historical cements from the Palace of Knossos, Crete, Greece." Journal of Cultural Heritage. 64 (2023): 113-119. AbstractWebsite

The Palace of Knossos, located on the island of Crete, Greece, is one of Europe's most important archaeological sites, serving as a testament to the Minoan civilization. Situated near the Mediterranean Sea, it is in close proximity to the seaport, airport, and industrial areas. Decay products commonly found in historical monuments within or near urban areas, such as black crusts and salt efflorescence, are also prevalent at the Palace of Knossos. To better understand the characteristics of the type of deterioration compounds found on cement in historical reconstruction zones, as well as their possible relationship with factors influencing the deterioration process, a multi-analytical approach was designed for the study of these materials. The results indicate that the black crusts primarily consist of gypsum and carbonaceous matter. However, the efflorescence salts are predominantly composed of thenardite instead of halite, despite the palace's proximity to the coastal area. These results may contribute to ongoing and future maintenance and preservation efforts for the monument.

Dias, Ana Margarida Gonçalves Carvalho, Inês Pimentel Moreira, Iana Lychko, Cátia Lopes Soares, Arianna Nurrito, Arménio Jorge Moura Barbosa, Viviane Lutz-Bueno, Raffaele Mezzenga, Ana Luísa Carvalho, Ana Sofia Pina, and Ana Cecília Afonso Roque. "Hierarchical self-assembly of a reflectin-derived peptide." Frontiers in Chemistry. 11 (2023). AbstractWebsite

Reflectins are a family of intrinsically disordered proteins involved in cephalopod camouflage, making them an interesting source for bioinspired optical materials. Understanding reflectin assembly into higher-order structures by standard biophysical methods enables the rational design of new materials, but it is difficult due to their low solubility. To address this challenge, we aim to understand the molecular self-assembly mechanism of reflectin’s basic unit—the protopeptide sequence YMDMSGYQ—as a means to understand reflectin’s assembly phenomena. Protopeptide self-assembly was triggered by different environmental cues, yielding supramolecular hydrogels, and characterized by experimental and theoretical methods. Protopeptide films were also prepared to assess optical properties. Our results support the hypothesis for the protopeptide aggregation model at an atomistic level, led by hydrophilic and hydrophobic interactions mediated by tyrosine residues. Protopeptide-derived films were optically active, presenting diffuse reflectance in the visible region of the light spectrum. Hence, these results contribute to a better understanding of the protopeptide structural assembly, crucial for the design of peptide- and reflectin-based functional materials.

Pinheiro, A., A. Ruivo, J. Rocha, M. Ferro, JV Pinto, J. Deuermeier, T. Mateus, A. Santa, MJ Mendes, R. Martins, S. Gago, C. A. T. Laia, and H. Águas. "Parylene-Sealed Perovskite Nanocrystals Down-Shifting Layer for Luminescent Spectral Matching in Thin Film Photovoltaics." Nanomaterials. 13 (2023). AbstractWebsite
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Ramos, António Pinho, Brisid Isufi, Rui Marreiros, Dario Coronelli, Teresa Netti, Marco Lamperti Tornaghi, Georgios Tsionis, and Aurelio Muttoni. "Seismic Performance of Strengthened Slab-Column Connections in a Full-Scale Test." Journal of Earthquake Engineering. 27 (2023): 2299-2318. AbstractWebsite
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