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2009
Paulino, Hervé, Paulo Cancela, and Tiago Franco. "Orchestration of Middleware Services." On the Move to Meaningful Internet Systems: OTM 2009 Workshops, Confederated International Workshops and Posters. Eds. Pilar Herrero Robert Meersman, and Tharam S. Dillon. Lecture Notes in Computer Science. Springer-Verlag, 2009. 1-3. Abstract
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Fernandes, Vítor H., Gracinda M. S. Gomes, and Manuel M. Jesus. "Congruences on monoids of transformations preserving the orientation of a finite chain." J. Algebra. 321 (2009): 743-757.Website
Fernandes, Vítor H., Gracinda M. S. Gomes, and Manuel M. Jesus. "Congruences on monoids of transformations preserving the orientation on a finite chain." J. Algebra. 321 (2009): 743-757. Abstract

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Quaresma, Pedro, Leonor Soares, Lívia Contar, Adelaide Miranda, Inês Osório, Patrícia A. Carvalho, Ricardo Franco, and Eulália Pereira. "Green photocatalytic synthesis of stable Au and Ag nanoparticles." Green Chemistry. 11.11 (2009): 1889-1893.quaresma_et_al_green_chem_11_2009_1889.pdf
P. Sanchez, A. Moreira, L. Fuentes, J. Araújo, and J. M. Lopes. "Model-Driven Development for Early Aspects." Information of Software and Technology. 52.3 (2009): 249-273. Abstract

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Faria, D. M. V., V. J. G. Lúcio, and A. M. P. Ramos Strengthening of reinforced concrete flat slabs using post-tensioning with anchorages by bonding. Eds. Fib. Fib symposium–concrete: 21st century superhero, London. London, 2009. Abstract

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P. Sanchez, J. Santos, M. Alferez, A. Rashid, L. Fuentes, A. Moreira, J. Araújo, and U. Kulesza. "VML*." Proceedings of the International Conference on Software Language Engineering (SLE). ACM Press, 2009. Abstract

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Pereira, P., H. Fino, F. Coito, and M. Ventim-Neves. "ADISI- An efficient tool for the automatic design of integrated spiral inductors." Proc. 16th IEEE Int. Conf. Electronics, Circuits, and Systems ICECS 2009. 2009. 799-802. Abstract

This paper introduces a tool for the optimization of CMOS integrated spiral inductors. Its aim is to offer designers a first approach on designing inductors without the need for fabrication. The core of the tool is an optimization procedure where technology constraints on the inductor layout parameters are considered by applying user-defined discretization on the design variables. User-defined constraints between layout parameters may also be accounted for, as a way of taking into account design heuristics. For those cases where the device area is a major concern area minimization may be considered. On the other hand, if a major design goal is the inductor quality factor the tool may yield the layout parameters which maximize the quality factor. The trade-off between quality factor and device area is evaluated through the generation of a graphical representation of quality factor versus output diameter for a given inductance. For the sake of simplicity the pi-model has been used for characterising the inductor. The application was developed in Matlab and the optimization toolbox is used. The validity of the design results obtained is checked against circuit simulation with ASITIC.

Pereira, P., H. Fino, F. Coito, and M. Ventim-Neves. "ADISI-An efficient tool for the automatic design of integrated spiral inductors." Electronics, Circuits, and Systems, 2009. ICECS 2009. 16th IEEE International Conference on. IEEE, 2009. 799-802. Abstract
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Figueiredo, Ondina M., Teresa Pereira Silva, and João Pedro Veiga. "Ancient glazed ceramic tiles: a long-term, study from the remediation of environmental impacts to the non-destructive characterization of materials." Proceedings of the International Seminar on Conservation of Glazed Ceramic Tiles: Research and Practice. 2009. Abstract
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Costa, P. M., S. Caeiro, M. S. Diniz, J. Lobo, M. Martins, A. M. Ferreira, M. Caetano, C. Vale, T. Á. DelValls, and M. H. Costa. "Biochemical endpoints on juvenile Solea senegalensis exposed to estuarine sediments: The effect of contaminant mixtures on metallothionein and CYP1A induction." Ecotoxicology. 18 (2009): 988-1000. AbstractWebsite
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Freitas, A. C., F. Ferreira, A. M. Costa, R. Pereira, S. C. Antunes, F. Gonçalves, T. A. P. Rocha-Santos, M. S. Diniz, L. Castro, I. Peres, and A. C. Duarte. "Biological treatment of the effluent from a bleached kraft pulp mill using basidiomycete and zygomycete fungi." Science of the Total Environment. 407 (2009): 3282-3289. AbstractWebsite
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Figueiredo, Ondina M., Teresa Pereira Silva, João Pedro Veiga, Isabel M. Prudêncio, Isabel M. Dias, Maria Antónia Matos, and Alexandre Manuel Pais. "Blue pigments in XVI-XVII century glazes: a comparative study between portuguese faiences and contemporary chinese porcelains manufactured for portuguese market." 18th International Materials Research Congress & 2nd Latin-American Symposium Physics & Chemistry Methods in Archeology, Art and Cultural Heritage Conservation, LASMAC-IMRS2009, August 16-20, 2009. 2009. Abstract
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Conrath, K., AS Pereira, C. E. Martins, C. G. Timoteo, P. Tavares, S. Spinelli, J. Kinne, C. Flaudrops, C. Cambillau, S. Muyldermans, I. Moura, JJG Moura, M. Tegoni, and A. Desmyter. "Camelid nanobodies raised against an integral membrane enzyme, nitric oxide reductase." Protein Science. 18 (2009): 619-628. AbstractWebsite

Nitric Oxide Reductase (NOR) is an integral membrane protein performing the reduction of NO to N(2)O. NOR is composed of two subunits: the large one (NorB) is a bundle of 12 transmembrane helices (TMH). It contains a b type heme and a binuclear iron site, which is believed to be the catalytic site, comprising a heme b and a non-hemic iron. The small subunit (NorC) harbors a cytochrome c and is attached to the membrane through a unique TMH. With the aim to perform structural and functional studies of NOR, we have immunized dromedaries with NOR and produced several antibody fragments of the heavy chain (VHHs, also known as nanobodies (TM)). These fragments have been used to develop a faster NOR purification procedure, to proceed to crystallization assays and to analyze the electron transfer of electron donors. BIAcore experiments have revealed that up to three VHHs can bind concomitantly to NOR with affinities in the nanomolar range. This is the first example of the use of VHHs with an integral membrane protein. Our results indicate that VHHs are able to recognize with high affinity distinct epitopes on this class of proteins, and can be used as versatile and valuable tool for purification, functional study and crystallization of integral membrane proteins.

Liu, Yan, Angelina S. Palma, and Ten Feizi. "Carbohydrate microarrays: key developments in glycobiology." Biological Chemistry. 390 (2009): 647-656. Abstract
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Barbosa, Paulo E. S., Franklin Ramalho, Jorge C. A. de Figueiredo, Antonio D. S. dos Junior, Anikó Costa, and Lu\'ıs Gomes. "Checking Semantics Equivalence of MDA Transformations in Concurrent Systems." J. UCS. 15 (2009): 2196-2224. Abstract
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Oliveira, JP, L. Oliveira, J. Ferreira, I. Bastos, T. Michalak, P. Pankiewicz, B. Nowacki, P. Makosa, and A. Rybarczyk. "Co-design strategy approach of lna, oscillator, and mixer." Electronics and Telecommunications Quarterly. 55 (2009): 585-599. Abstract
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Martins, M. A., L. B. Oliveira, and J. R. Fernandes. "Combined LNA and mixer circuits for 2.4 GHz ISM band." Circuits and Systems, 2009. ISCAS 2009. IEEE International Symposium on. IEEE, 2009. 425-428. Abstract
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Pereira, AS, F. Folgosa, M. Guilherme, A. G. Duarte, C. G. Timóteo, P. Tavares, and BH HUYNH. "Concerted iron and oxygen detoxification at the tri-nuclear Fe site of bacterial ferritin from Desulfovibrio vulgaris Hildenborough." J Biol Inorg Chem. 14 (2009): S34. Abstract
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Jacobs, LL, O. Mateus, M. J. Polcyn, AS Schulp, CR Scotese, A. Goswami, KM Ferguson, JA Robbins, DP Vineyard, and AB Neto. "Cretaceous paleogeography, paleoclimatology, and amniote biogeography of the low and mid-latitude South Atlantic Ocean." Bulletin de la Societe Geologique de France. 180 (2009): 333-341. Abstract
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Almeida, PL, S. Kundu, D. Beja, J. Fonseca, J. L. Figueirinhas, and M. H. Godinho. "Deformation of isotropic and anisotropic liquid droplets dispersed in a cellulose liquid crystalline derivative." Cellulose. 16.3 (2009): 427-434. Abstract
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Pereira, R., S. C. Antunes, A. M. M. Gonçalves, S. M. Marques, F. Gonçalves, F. Ferreira, A. C. Freitas, T. A. P. Rocha-Santos, M. S. Diniz, L. Castro, I. Peres, and A. C. Duarte. "The effectiveness of a biological treatment with Rhizopus oryzae and of a photo-Fenton oxidation in the mitigation of toxicity of a bleached kraft pulp mill effluent." Water Research. 43 (2009): 2471-2480. AbstractWebsite
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Diniz, M. S., I. Peres, L. Castro, A. C. Freitas, T. A. P. Rocha-Santos, P. M. Costa, R. Pereira, and A. C. Duarte. "Effects of ECF-Kraft pulp mill effluent treated with fungi (Rhizopus oryzae) on reproductive steroids and liver CYP1A of exposed goldfish (Carassius auratus)." Ecotoxicology. 18 (2009): 1011-1017. AbstractWebsite
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Figueiredo, V.a, Elangovan Gonçalves Franco Alves Park Martins Fortunato E. a G. a. "Electrical, structural and optical characterization of copper oxide thin films as a function of post annealing temperature." Physica Status Solidi (A) Applications and Materials Science. 206 (2009): 2143-2148. AbstractWebsite

Copper oxide thin films were obtained by annealing (temperature ranging between 100 and 450 °C) the metallic Cu films deposited on glass substrates by e-beam evaporation. XRD studies confirmed that the cubic Cu phase of the asdeposited films changes into single cubic Cu 2Ophase and single monoclinic CuO phase, depending on the annealing conditions. The crystallite size is varied betweeñ12 and 31 nm. The lattice parameters of cubic Cu and Cu 2Ophases are estimated tõ3.60 and ̃4.26 Å , respectively. The films with Cu 2O phase showed p-type characteristics. The conductivity is decreased linearly with the decreasing temperature (1/T), which has confirmed the semiconductor nature of the deposited films. The calculated activation energy is varied between 0.10 and 0.16 eV. The surface microstructure is changed depending on the variation in the annealing temperature. The poor transmittance of the asdeposited films (<1%) is increased to a maximum of ̃80% (800 nm) on annealing at 200 °C. The estimated direct allowed band gap is varied between 1.73 and 2.89 eV. © 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Almeida, PL, S. Kundu, J. P. Borges, M. H. Godinho, and J. L. Figueirinhas. "Electro-optical light scattering shutter using electrospun cellulose-based nano-and microfibers." Applied Physics Letters. 95.4 (2009): 043501. Abstract
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