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2013
Danciu, A.-I..a b, Musat Busani Pinto Barros Maria Rego Maria Ferraria Carvalho Martins Fortunato V. a T. b. "Uniform arrays of ZnO 1D nanostructures grown on Al:ZnO seeds layers by hydrothermal method." Journal of Nanoscience and Nanotechnology. 13 (2013): 6701-6710. AbstractWebsite

In obtaining uniform array of ZnO 1D nanostructures, especially using solution based methods, the thickness and the morphology of the epitaxial seeds layer are very important. The paper presents the effect of the thickness and the morphology of the Al:ZnO seeds layer on the morphology and properties of ZnO nanowires array grown by hydrothermal method. Compact and vertically aligned ZnO 1D nanostructures were obtained. Concentration of 0.02 M of zinc nitrate was found to be optimal for growing nanowires with diameters up to 50 nm and lengths between 1.5 and 2.5 microns. Using 0.04 M solution, nanorods with diameter between 50 and 100 nm were obtained. The correlation between the crystal structure and optical properties of ZnO nanowires is discussed. From electrical measurements on single nanowire, resistivity value of 9×10?2 cm was obtained. The I-V curves of single ZnO NWs show quasi diode characteristic when an e-beam is irradiating the NWs, and a typical semiconductive behaviour when the e-beam is turned off. Copyright © 2013 American Scientific Publishers.

Lanca, M. C., I. Cunha, J. P. Marques, E. R. Neagu, L. Gil, C. J. Dias, and J. N. Marat-Mendes. "Water Content Control To Improve Space Charge Storage in a Cork Derivative." Advanced Materials Forum Vi, Pts 1 and 2. Eds. AMP Pinto, and AS Pouzada. Vol. 730-732. Materials Science Forum, 730-732. 2013. 395-400. Abstract
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Lanca, M. C., I. Cunha, J. P. Marques, E. R. Neagu, L. Gil, C. J. Dias, J. N. Marat-Mendes, AMP Pinto, and AS Pouzada. "Water Content Control To Improve Space Charge Storage in a Cork Derivative." Advanced Materials Forum Vi, Pts 1 and 2. 730-732 (2013): 395-400. Abstract
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Silva, S. S., A. R. C. Duarte, J. M. Oliveira, J. F. Mano, and R. L. Reis. "{Alternative methodology for chitin-hydroxyapatite composites using ionic liquids and supercritical fluid technology}." Journal of Bioactive and Compatible Polymers. 28 (2013). Abstract

An alternative, green method was used to develop chitin-based biocomposite (ChHA) materials by an integrated strategy using ionic liquids, supercritical fluid drying, and salt leaching. ChHA matrices were produced by dissolving chitin in 1-butyl-methylimidazolium acetate along with salt and/or hydroxyapatite particles and then subsequent drying. The ChHA composite formed had a heterogeneous porous microstructure with 65{%}-85{%} porosity and pore sizes in the range of 100-300 $μ$m. The hydroxyapatite was found to be well distributed within the composite structures and had a positive effect in the viability and proliferation of osteoblast-like cells, in vitro. Our findings indicate that these ChHA matrices have potential applications in bone tissue engineering. © The Author(s) 2013.

Silva, Simone S., Ana Rita C. Duarte, João F. Mano, and Rui L. Reis. "{Design and functionalization of chitin-based microsphere scaffolds}." Green Chemistry. 15 (2013): 3252. AbstractWebsite

Chitin agglomerated scaffolds were produced and functionalized using the green chemistry principles and clean technologies. Such combination enabled the functionalization of chitin microparticles prepared through dissolution of the polymer in ionic liquids, followed by of the application of a sol-gel method. Finally, the 3D constructs were moulded and dried using a supercritical assisted agglomeration method. Structural and morphological characterization is presented using scanning electronic microscopy (SEM) and micro-computed tomography ([small micro]-CT). An evaluation of the bioactive behavior of the matrices was made by immersing them in simulated body fluid (SBF) for up to 21 days. The potential of such matrices as drug delivery systems was evaluated after the incorporation of dexamethasone into the matrices during drying in supercritical assisted agglomeration. The findings suggested that the morphological features such as porosity, interconnectivity and pore size distribution of the matrices can be tunned by changing particle size, chitin concentration and the pressure applied during moulding. Chitin microspheres were modified by siloxane and silanol groups, providing a bioactive behavior; the apatite formation was shown to be dependent on the amount and arrangement of silanol groups. Furthermore, in vitro drug release studies showed that dexamethasone was sustainably released. All findings suggest that this strategy is a feasible and advantageous process to obtain chitin-based 3D structures with both functional and structural characteristics that make then suitable for regenerative medicine applications.

Figueiredo, V., JV Pinto, J. Deuermeier, R. Barros, E. Alves, R. Martins, and E. Fortunato. "{p-Type Cu O Thin-Film Transistors Produced by Thermal Oxidation}." Journal of Display Technology. 9 (2013): 735-740. Abstract

Thin-films of copper oxide Cu O were produced by thermal oxidation of metallic copper (Cu) at different tempera- tures (150–450 C). The films produced at temperatures of 200, 250 and 300 C showed high Hall motilities of 2.2, 1.9 and 1.6 cm V s , respectively. Single Cu O phases were obtained at 200 Cand its conversion toCuO starts at 250 C. For lower thick- nesses 40 nm, the films oxidized at 250 Cshowed a complete conversion to CuO phase. Successful thin-film transistors (TFTs) were produce by thermal oxidation of a 20 nm Cu film, obtaining p-type Cu O (at 200 C) and CuO (at 250 C) with On/Off ratios of 6 10 and 1 10 , respectively.

Fernandes-Silva, S., J. Moreira-Silva, T. H. Silva, R. I. Perez-Martin, C. G. Sotelo, J. F. Mano, A. R. C. Duarte, and R. L. Reis. "{Porous hydrogels from shark skin collagen crosslinked under dense carbon dioxide atmosphere}." Macromolecular Bioscience. 13 (2013). Abstract

The possibility to fabricate marine collagen porous structures crosslinked with genipin under high pressure carbon dioxide is investigated. Collagen from shark skin is used to prepare pre-scaffolds by freeze-drying. The poor stability of the structures and low mechanical properties require crosslinking of the structures. Under dense CO 2 atmosphere, crosslinking of collagen pre-scaffolds is allowed for 16 h. Additionally, the hydrogels are foamed and the scaffolds obtained present a highly porous structure. In vitro cell culture tests performed with a chondrocyte-like cell line show good cell adherence and proliferation, which is a strong indication of the potential of these scaffolds to be used in tissue cartilage tissue engineering. The development of an optimized processing technique for the preparation of stable structures from marine origin collagen is described. The samples are processed under a dense carbon dioxide atmosphere that promotes crosslinking and enhances the morphology of the 3D architectures obtained. © 2013 WILEY-VCH Verlag GmbH {&} Co. KGaA, Weinheim.

Engineering, Tissue, Cell Based, Campus D. E. Gualtar, Maria Manuela, Estima Gomes, A. N. A. Rita, Cruz Duarte, Sentido D. E. Fornecer, U. M. A. Estrutura, Porosa E. Interconectada, and Suporte D. E. A. O. Crescimento. "{PT 106220}." 106220 (2013). Abstract
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Engineering, Tissue, Cell Based, Campus D. E. Gualtar, Maria Manuela, Estima Gomes, A. N. A. Rita, Cruz Duarte, Sentido D. E. Fornecer, U. M. A. Estrutura, Porosa E. Interconectada, and Suporte D. E. A. O. Crescimento. "{PT 106220}." 106220 (2013). Abstract
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Duarte, Ana Rita C., Vitor E. Santo, Anabela Alves, Simone S. Silva, Joana Moreira-Silva, Tiago H. Silva, Alexandra P. Marques, Rui A. Sousa, Manuela E. Gomes, João F. Mano, and Rui L. Reis. "{Unleashing the potential of supercritical fluids for polymer processing in tissue engineering and regenerative medicine}." Journal of Supercritical Fluids. 79 (2013): 177-185. AbstractWebsite

One of the major scientific challenges that tissue engineering and regenerative medicine (TERM) faces to move from benchtop to bedside regards biomaterials development, despite the latest advances in polymer processing technologies. A variety of scaffolds processing techniques have been developed and include solvent casting and particles leaching, compression molding and particle leaching, thermally induced phase separation, rapid prototyping, among others. Supercritical fluids appear as an interesting alternative to the conventional methods for processing biopolymers as they do not require the use of large amounts of organic solvents and the processes can be conducted at mild temperatures. However, this processing technique has only recently started to receive more attention from researchers. Different processing methods based on the use of supercritical carbon dioxide have been proposed for the creation of novel architectures based on natural and synthetic polymers and these will be unleashed in this paper. © 2013 Elsevier B.V. All rights reserved.

Duarte, Ana Rita C., Vitor E. Santo, Anabela Alves, Simone S. Silva, Joana Moreira-Silva, Tiago H. Silva, Alexandra P. Marques, Rui A. Sousa, Manuela E. Gomes, João F. Mano, and Rui L. Reis. "{Unleashing the potential of supercritical fluids for polymer processing in tissue engineering and regenerative medicine}." Journal of Supercritical Fluids. 79 (2013): 177-185. AbstractWebsite

One of the major scientific challenges that tissue engineering and regenerative medicine (TERM) faces to move from benchtop to bedside regards biomaterials development, despite the latest advances in polymer processing technologies. A variety of scaffolds processing techniques have been developed and include solvent casting and particles leaching, compression molding and particle leaching, thermally induced phase separation, rapid prototyping, among others. Supercritical fluids appear as an interesting alternative to the conventional methods for processing biopolymers as they do not require the use of large amounts of organic solvents and the processes can be conducted at mild temperatures. However, this processing technique has only recently started to receive more attention from researchers. Different processing methods based on the use of supercritical carbon dioxide have been proposed for the creation of novel architectures based on natural and synthetic polymers and these will be unleashed in this paper. © 2013 Elsevier B.V. All rights reserved.

2012
Vitor Rosa, Sara Realista, Ana Mourato, Luisa Maria Abrantes, Joao Henriques, Maria Jose Calhorda, Teresa Aviles, Michael G. B. Drew, and Vitor Felix. "{1,1 `-Bis(diphenylphosphino)ferrocene bridging two mono(cyclopentadienyl) cobalt moieties: Synthesis, structure, electrochemistry and DFT studies}." {JOURNAL OF ORGANOMETALLIC CHEMISTRY}. {712} (2012): {52-56}. Abstract

{Reaction of {[}Co(eta(5)-C5H5)(CO)(2)], 1, with 1,1'-bis(diphenylphosphino)ferrocene (dppf) yields the new trinuclear complex {[}Co(eta(5)-C5H5)(CO)](2)(mu-dppf), 2, which was structurally characterised by single crystal X-ray diffraction and showed two Co(eta(5)-C5H5)(CO) moieties covalently linked by a dppf bridge. Electrochemical studies in dichloromethane revealed that both Co(I) and Fe(II) in the precursors were oxidized to Co(II)/Co(III) and Fe(III), respectively. On the other hand, in 2 the two first oxidation waves were assigned to Co, the Fe(II) centre requiring a higher potential than in free dppf. DFT calculations showed that the HOMOs of 2 were localised in the Co fragments, owing to the destabilisation of the Co(eta(5)-C5H5)(CO) orbitals after binding dppf. (C) 2012 Elsevier B.V. All rights reserved.}

Monteiro, Regina C. C., Andreia A. S. Lopes, Maria M. A. Lima, Joao P. Veiga, Rui JC Silva, Carlos J. Dias, Erika J. R. Davim, and Maria H. V. Fernandes. "Sintering, Crystallization, and Dielectric Behavior of Barium Zinc Borosilicate GlassesuEffect of Barium Oxide Substitution for Zinc Oxide." Journal of the American Ceramic Society. 95.10 (2012): 3144-3150. Abstract
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Dias, Ricardo J., Vasco Pessanha, and João M. Lourenço. "Precise Detection of Atomicity Violations." Haifa Verification Conference. Lecture Notes in Computer Science. Haifa, Israel: Springer Berlin / Heidelberg, 2012. Abstracthvc2012.pdf

Concurrent programs that are free of unsynchronized ac- cesses to shared data may still exhibit unpredictable concurrency errors called atomicity violations, which include both high-level dataraces and stale-value errors. Atomicity violations occur when programmers make wrong assumptions about the atomicity scope of a code block, incorrectly splitting it in two or more atomic blocks and allow them to be interleaved with other atomic blocks. In this paper we propose a novel static analysis algorithm that works on a dependency graph of program variables and detects both high-level dataraces and stale-value errors. The algorithm was implemented for a Java Bytecode analyzer and its effectiveness was evaluated with some well known faulty programs. The results obtained show that our algorithm performs better than previous approaches, achieving higher precision for small and medium sized programs, making it a good basis for a practical tool.

Dell'acqua, S., S. R. Pauleta, J. J. Moura, and I. Moura. "Biochemical characterization of the purple form of Marinobacter hydrocarbonoclasticus nitrous oxide reductase." Philos Trans R Soc Lond B Biol Sci. 367 (2012): 1204-12. AbstractWebsite

Nitrous oxide reductase (N(2)OR) catalyses the final step of the denitrification pathway-the reduction of nitrous oxide to nitrogen. The catalytic centre (CuZ) is a unique tetranuclear copper centre bridged by inorganic sulphur in a tetrahedron arrangement that can have different oxidation states. Previously, Marinobacter hydrocarbonoclasticus N(2)OR was isolated with the CuZ centre as CuZ*, in the [1Cu(2+) : 3Cu(+)] redox state, which is redox inert and requires prolonged incubation under reductive conditions to be activated. In this work, we report, for the first time, the isolation of N(2)OR from M. hydrocarbonoclasticus in the 'purple' form, in which the CuZ centre is in the oxidized [2Cu(2+) : 2Cu(+)] redox state and is redox active. This form of the enzyme was isolated in the presence of oxygen from a microaerobic culture in the presence of nitrate and also from a strictly anaerobic culture. The purple form of the enzyme was biochemically characterized and was shown to be a redox active species, although it is still catalytically non-competent, as its specific activity is lower than that of the activated fully reduced enzyme and comparable with that of the enzyme with the CuZ centre in either the [1Cu(2+) : 3Cu(+)] redox state or in the redox inactive CuZ* state.

Duarte, Faria, Inácio Micael, Lúcio Válter, and Ramos António. "Punching of Strengthened Concrete Flat Slabs—Experimental Analysis and Comparison with Codes." Structural Engineering International. 22 (2012): 202-214. AbstractWebsite

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Delgado-Gomes, Vasco, Jose A. Oliveira-Lima, Joao F. Martins, Celson Lima, and Pedro Pereira. "Towards to a Web Service alert software system for standard electrical protective devices." Intelligent Engineering Systems (INES), 2012 IEEE 16th International Conference on. Lisbon, Portugal 2012. 197-201. Abstract

Electrical Protective Devices are key elements in the electrical network. Their purpose is to perform fault detection in electric power systems, by analysing power system voltages and currents. In order to achieve a more centralized control, protective devices can be connected using Web Services through a Service-Oriented Architecture (SOA) approach. This work targets planning and specification of a mapping between Abstract Communication Service Interface (ACSI) Reporting and Device Profile for Web Services (DPWS) Eventing to achieve a better protective electrical devices control, obtaining an event based alert software system, replacing conventional polling-based systems.

Pereira, AS, C. G. Timoteo, M. Guilherme, F. Folgosa, S. G. Naik, A. G. Duarte, BH HUYNH, and P. Tavares. "Spectroscopic evidence for and characterization of a trinuclear ferroxidase center in bacterial ferritin from Desulfovibrio vulgaris Hildenborough." Journal of the American Chemical Society. 134 (2012): 10822-32. AbstractWebsite

Ferritins are ubiquitous and can be found in practically all organisms that utilize Fe. They are composed of 24 subunits forming a hollow sphere with an inner cavity of ~80 A in diameter. The main function of ferritin is to oxidize the cytotoxic Fe(2+) ions and store the oxidized Fe in the inner cavity. It has been established that the initial step of rapid oxidation of Fe(2+) (ferroxidation) by H-type ferritins, found in vertebrates, occurs at a diiron binding center, termed the ferroxidase center. In bacterial ferritins, however, X-ray crystallographic evidence and amino acid sequence analysis revealed a trinuclear Fe binding center comprising a binuclear Fe binding center (sites A and B), homologous to the ferroxidase center of H-type ferritin, and an adjacent mononuclear Fe binding site (site C). In an effort to obtain further evidence supporting the presence of a trinuclear Fe binding center in bacterial ferritins and to gain information on the states of the iron bound to the trinuclear center, bacterial ferritin from Desulfovibrio vulgaris (DvFtn) and its E130A variant was loaded with substoichiometric amounts of Fe(2+), and the products were characterized by Mossbauer and EPR spectroscopy. Four distinct Fe species were identified: a paramagnetic diferrous species, a diamagnetic diferrous species, a mixed valence Fe(2+)Fe(3+) species, and a mononuclear Fe(2+) species. The latter three species were detected in the wild-type DvFtn, while the paramagnetic diferrous species was detected in the E130A variant. These observations can be rationally explained by the presence of a trinuclear Fe binding center, and the four Fe species can be properly assigned to the three Fe binding sites. Further, our spectroscopic data suggest that (1) the fully occupied trinuclear center supports an all ferrous state, (2) sites B and C are bridged by a mu-OH group forming a diiron subcenter within the trinuclear center, and (3) this subcenter can afford both a mixed valence Fe(2+)Fe(3+) state and a diferrous state. Mechanistic insights provided by these new findings are discussed and a minimal mechanistic scheme involving O-O bond cleavage is proposed.

Miller, A. Z., M. Hernandez-Marine, V. Jurado, A. Dionisio, P. Barquinha, E. Fortunato, M. J. Afonso, H. I. Chamine, and C. Saiz-Jimenez. "Enigmatic reticulated filaments in subsurface granite." Environmental Microbiology Reports. 4 (2012): 596-603. AbstractWebsite
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Vale, Tiago M., Ricardo J. Dias, and João M. Lourenço. "Uma Infraestrutura para Suporte de Memória Transacional Distribuída." INForum 2012: Proceedings of INForum Simpósio de Informática. Monte de Capraica, PT: Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, 2012. Abstractinforum-dstm.pdf

As técnicas e algoritmos desenvolvidos sobre diferentes infraestruturas específicas dificilmente podem ser comparados entre si. Este princípio também se aplica às infraestruturas para execução de Memória Transacional Distribuída (MTD), pois não só são muito escassas aquelas que permitem o desenvolvimento, teste e comparação de vários algoritmos e técnicas de implementação, como fornecem uma interface intrusiva para o programador. Sem uma comparação justa, não é possível aferir quais as técnicas e algoritmos mais apropriados em cada contexto de utilização (workload). Neste artigo propomos uma infraestrutura generalista, muito flexível, que possibilita a experimentação de várias estratégias de MTD, permitindo o desenvolvimento de uma grande variedade de algoritmos e de técnicas de implementação eficientes e otimizadas. Através da sua utilização, é agora possível a comparação de técnicas e algoritmos em diferentes contextos de utilização (workloads), recorrendo a uma única infraestrutura e com implicações mínimas no código da aplicação.

Diogo, T., and M. Rebelo Numerical Methods for Nonlinear Singular Volterra Integral Equations. AIP Conference Proceedings- ICNAAM 2012, Vol. 1479,. Kos, Greece, 2012.
Rosa, V., S. Realista, A. Mourato, L. M. Abrantes, J. Henriques, M. J. Calhorda, T. Avilés, M. G. B. Drew, and V. Félix. "1,1′-Bis(diphenylphosphino)ferrocene bridging two mono(cyclopentadienyl) cobalt moieties: Synthesis, structure, electrochemistry and DFT studies." Journal of Organometallic Chemistry. 712 (2012): 52-56. AbstractWebsite
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Duarte, P., D. P. Ferreira, T. F. Lopes, JV Pinto, I. M. Fonseca, I. Ferreira Machado, and L. F. Vieira Ferreira. "DSM as a probe for the characterization of modified mesoporous silicas." Microporous and Mesoporous Materials. 161 (2012): 139-147. Abstract
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Chastre, Carlos, Válter Lúcio, Arnold Van Acker, Barry Crisp, Daniela Gutstein, Filipe Saraiva, Íria Doniak, Jason Krohn, José Barros Viegas, Marcelo Ferreira, Marco Menegotto, Mounir el Debs, Simon Hughes, Spyros Tsoukantas, and Stefano Pampanin Estruturas Pré-Moldadas no Mundo. Aplicações e Comportamento Estrutural. Brasil: Fundação da Faculdade de Ciência e Tecnologias da Universidade NOVA de Lisboa, 2012. AbstractWebsite

A indústria do betão pré fabricado é, por tradição, inovadora, precursora de novas tecnologias e de novos materiais.O processo produtivo de estruturas com elementos pré-fabricados difere significativamente do das estruturas betonadas em obra pelo facto de uma parte, ou a totalidade, dos elementos da estrutura serem produzidos em fábrica, em condições de produção melhoradas em relação às condições da obra, e serem posteriormente transportados para a obra, onde são, finalmente ligados entre si. A produção em fábrica é efectuada em ambiente protegido do Sol e da chuva, com operários fixos e com formação profissional para desenvolverem tarefas com procedimentos normalizados. Consequentemente, os elementos executados em fábrica possuem melhor qualidade, sob vários aspectos, do que as estruturas executadas em obra.Este livro divide-se em duas grandes áreas, numa primeira abordam-se algumas aplicações de estruturas pré-moldadas no mundo e numa segunda parte descreve-se o seu comportamento estrutural face a diferentes acções. Nos primeiros capítulos relata-se a experiência da pré-fabricação em três países de diferentes continentes: o Brasil, Portugal e a Austrália e revelam-se novas oportunidades que poderão surgir para a indústria da pré-fabricação. Nos capítulos seguintes dá-se um especial enfoque à investigação do comportamento das ligações (rígidas e semi-rígidas). Aborda-se o projecto de estruturas de betão pré-fabricado às acções acidentais. E por fim, dedicam-se os últimos capítulos ao comportamento das estruturas pré-fabricadas face às acções sísmicas. Nesta área, o bom desempenho das estruturas e grande parte do conhecimento e da tecnologia actual advém da resposta dada pelos engenheiros, investigadores e construtores aos fenómenos naturais que afectam as nossas construções, como comprova o desempenho das ligações dúcteis resistentes a momentos em edifícios pré fabricados de betão no verdadeiro teste sísmico que foram os sismos de Christchurch de 2010 e 2011.

Romain, C., V. Rosa, C. Fliedel, F. Bier, F. Hild, R. Welter, S. Dagorne, and T. Avilés. "Highly active zinc alkyl cations for the controlled and immortal ring-opening polymerization of ε-caprolactone." Dalton Transactions. 41.12 (2012): 3377-3379. AbstractWebsite
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