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2008
Royval, {Alfredo Gabaldon}, {João Alexandre Carvalho Pinheiro} Leite, and {José Júlio Alves} Alferes. "Non-markovian agent evolution with EVOLP." Dagstuhl Seminar Proceedings. 2008. 13. Abstract
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Alferes, {José Júlio Alves}. "Towards Reactive Semantic Web Policies: Advanced Agent Control for the Semantic Web." CEUR WS-proceedings. 2008. Abstract
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Seco, J. C., Ricardo Silva, and Margarida Piriquito. "ComponentJ: component programming and reconfiguration." Proceedings of CoRTA (Compilers, Related Technologies and Applications). Instituto Politécnico de Bragança - ESTG, 2008.
M. Alferez, U. Kulesza, A. Sousa, J. Santos, A. Moreira, J. Araújo, and Vasco Amaral. "A Model-Driven Approach for Software Product Lines Requirements Engineering." Proceedings of the 20th International Conference on Software Engineering and Knowledge Engineering. Knowledge Systems Institute Graduate School, 2008. Abstract

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R. Ramos, J. Castro, J. Araújo, A. Moreira, and F. Alencar. "Refatoração para Documento de Requisitos: Uma Abordagem Aspectual." IEEE Latin America Transactions. 6 (2008). Abstract

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M. S. Tabares, R. Anaya, A. Moreira, J. Araújo, and F. Arango. "Traceability Models to Control an Aspectual Model-driven Development." 20th International Conference on Software Engineering and Knowledge Engineering (SEKE 2008). SEKE, 2008. Abstract

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Paulino, Hervé, and Luís Lopes. "A programming language for service-oriented computing with mobile agents." Software: Practice and Experience. 38 (2008): 705-734. Abstract
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Paulino, Hervé. "SuMo: A Framework for Prototyping Distributed and Mobile Software." Algorithms and Architectures for Parallel Processing, 8th International Conference, ICA3PP 2008. Eds. A. Bourgeois, and S. Q. Zheng. Lecture Notes in Computer Science. Springer-Verlag, 2008. 269-281. Abstract
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Vieira, Hugo T., L. Caires, and J. C. Seco. "The Conversation Calculus: A Model of Service Oriented Computation." Programming Languages and Systems, 17th European Symposium on Programming, ESOP 2008. Ed. Sophia Drossopoulou. Lecture Notes in Computer Science. Springer-Verlag, 2008.
M. Lencastre, J. Araújo, A. Moreira, and J. Castro. "Towards Aspectual Problem Frames: an Example." Expert Systems Journal. 25 (2008): 63-75. Abstract

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C. Silva, J. Araújo, J. F. B. Castro, and A. Moreira. ": A Modeling Language for Advanced Separation of Concerns in Multi-Agent Systems." Memorias de la XI Conferencia Iberoamericana de Software Engineering. Cibse 2008, 2008. Abstract

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Oliveira, F. "Adiabatic limit of the Zakharov-Rubenchik Equation." Reports on Mathematical Physics. 28.12 (2008): 13-27.Website
Salema, Maria Isabel Gomes, Ana Paula Barbosa-povoa, and Augusto Q. Novais. "Analysis and Retrofit of the EEE Portuguese Recovery Network." POMS 19th Annual Conference. LA Jolla, USA 2008. Abstract2008_salema08analysisretrofiteeeportugeserecoverynetwork_poms08.pdf

The Portuguese directive 230/2004 established December 2006 as the dead-line for the legal targets of EEE recovery to be achieved. The EEE producers working in Portugal set up an organization whose mission is to design and manage this recovery network. A MILP model was previously developed to optimize the network design where, by considering EEE sources and recycling facilities locations as known, sorting centre locations were determined together with the planning of collection and sorting activities. In the present paper, the network planned by the Portuguese EEE organization is compared with the results provided by this early model. In addition, and taking into account new organizational objectives, where collecting and sorting entities should independently perform the associated activities, the developed model is further extended, in order to account for a new network level related to the collection and sorting activities, and the previous network is retrofitted.

M. Lencastre, A. Moreira, J. Araújo, and J. F. B. Castro. "Aspects Composition in Problem Frames." 16th IEEE International Requirements Engineering Conference (RE 2008). IEEE Computer Society, 2008. Abstract

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J. Ribeiro, and J. Araújo. "AspOrAS: A requirements agile approach based on scenarios and aspects." IEEE Research Chalenges on Information Systems, RCIS. IEEE Computer Society, 2008. Abstract

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Aad, G., A. Wemans, and et al. "The ATLAS Experiment at the CERN Large Hadron Collider." Journal of Instrumentation. 3 (2008).
Rauter, Amélia P., Alice Martins, Rui Lopes, Joana Ferreira, Luísa M. Serralheiro, Maria-Eduarda Araújo, Carlos Borges, Jorge Justino, Filipa V. Silva, Margarida Goulart, Jane Thomas-Oates, João A. Rodrigues, Emma Edwards, João P. Noronha, Rui Pinto, and Hélder Mota-Filipe. "Bioactivity studies and chemical profile of the antidiabetic plant Genista tenera." Journal of Ethnopharmacology. 122.2 (2008): 384-393.
Preguiça, Nuno, Rodrigo Rodrigues, Cristóvão Honorato, and João M. Lourenço. "Byzantium: Byzantine-fault-tolerant database replication providing snapshot isolation." Proceedings of the Fourth conference on Hot topics in system dependability. {HotDep}'08. Berkeley, CA, USA: USENIX Association, 2008. 9. Abstractbyzantium-hotdep.pdf

Database systems are a key component behind many of today's computer systems. As a consequence, it is crucial that database systems provide correct and continuous service despite unpredictable circumstances, such as software bugs or attacks. This paper presents the design of Byzantium, a Byzantine fault-tolerant database replication middleware that provides snapshot isolation (SI) semantics. SI is very popular because it allows increased concurrency when compared to serializability, while providing similar behavior for typical workloads. Thus, Byzantium improves on existing proposals by allowing increased concurrency and not relying on any centralized component. Our middleware can be used with off-the-shelf database systems and it is built on top of an existing BFT library.

Caeiro, F., and M. I. Gomes Caudas pesadas: t de Student e variante assimétrica versus metodologia semi-paramétrica.. Actas do XV Congresso Anual da Sociedade Portuguesa de Estatística - “Da Teoria à Prática”. Lisboa, 2008.art053.pdf
Mateus, O. "Checklist for Late Jurassic reptiles and amphibians from Portugal." Livro de Resumos do X Congresso Luso-Espanhol de Herpetologia. Coimbra 2008. 55. Abstractmateus_2008_lista_de_repteis_e_anfibios_do_jurassico_superior_de_portugal__list_congressoherpetolog.pdf

The richness of Late Jurassic vertebrates in Portugal is known since the 19th century by Paul Choffat, Henri Sauvage and other. The Kimmeridgian Guimarota fauna assemblage is the best known, followed by the fauna of Lourinhã formation. Here is presented an attempt to provide a checklist of the reptiles and amphibians of the Late Jurassic. Amphibia: Lissamphibia (Celtedens, cf. Marmorerpeton, Discoglossidae indet.). Chelonia: Eucryptodira (Pleurosternidae indet., Platychelyidae indet., Plesiochelys cf. etalloni, Plesiochelys choffati, Anosteirinae indet.). Squamata: Scincomorpha (Becklesius hoffstetteri; Paramacellodus sp., Saurillodon proraformis, S. henkeli, S. cf. obtusus). Squamata: Anguimorpha (Dorsetisaurus pollicidens, Parviraptor estesi). Crown Lepidosauromorpha (Marmoretta sp.). Choristodera: Cteniogenidae (Ctenogenys reedi). Sauropterygia: Plesiosauria: Cryptoclidoidea: Cryptoclididae indet. Crocodylomorpha (Lisboasaurus estesi, L. mitrocostatus). Crocodyliformes: Neosuchia (Machimosaurus hugii, Goniopholis cf. simus, Goniopholis baryglyphaeus, cf. Bernissartia, Atoposauridae, Theriosuchus guimarotae, cf. Alligatorium, Metriorhynchus sp.). Pterosauria (Rhamphorhynchus sp., Pterodactylus sp.). Dinosauria: Theropoda (Ceratosaurus sp. , Torvosaurus sp., Lourinhanosaurus antunesi, Allosaurus europaeus, Cf. Compsognathus sp., cf. Richardoestesia sp., Dromaeosaurinae indeter., Velociraptorinae indeter., cf. Archaeopteryx sp., aff. Paronychodon). Dinosauria: Sauropoda: Eusauropoda (Dinheirosaurus lourinhanensis, Lourinhasaurus alenquerensis, Lusotitan atalaiensis, Apatosaurus sp.). Dinosauria: Ornithischia: Thyreophora (Dacentrurus armatus, Stegosaurus sp., Dracopelta zbyszewskii). Dinosauria: Ornithischia: Ornithopoda (Phyllodon henkeli, Dryosaurus sp., Hypsilophodon sp., Alocodon kuehnei, Trimucrodon cuneatus, Draconyx loureiroi).

Amarante dos Santos, Filipe, and C. Cismaşiu. "Comparison between two SMA constitutive models for seismic applications." Twelfth Conference on Nonlinear Vibrations, Dynamics, and Multibody Systems. Blacksburg, VA 2008.
Goulão, Miguel Component-Based Software Engineering: a Quantitative Approach. Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa. Caparica: Universidade Nova de Lisboa, 2008. Abstracttese.pdf

Background: Often, claims in Component-Based Development (CBD) are only sup-
ported by qualitative expert opinion, rather than by quantitative data. This contrasts
with the normal practice in other sciences, where a sound experimental validation of
claims is standard practice. Experimental Software Engineering (ESE) aims to bridge
this gap. Unfortunately, it is common to find experimental validation efforts that are
hard to replicate and compare, to build up the body of knowledge in CBD.


Objectives:
In this dissertation our goals are (i) to contribute to evolution of ESE, in
what concerns the replicability and comparability of experimental work, and (ii) to ap-
ply our proposals to CBD, thus contributing to its deeper and sounder understanding.


Techniques:
We propose a process model for ESE, aligned with current experimen-
tal best practices, and combine this model with a measurement technique called
Ontology-Driven Measurement (ODM). ODM is aimed at improving the state of prac-
tice in metrics definition and collection, by making metrics definitions formal and ex-
ecutable, without sacrificing their usability. ODM uses standard technologies that can
be well adapted to current integrated development environments.


Results:
Our contributions include the definition and preliminary validation of a pro-
cess model for ESE and the proposal of ODM for supporting metrics definition and
collection in the context of CBD. We use both the process model and ODM to perform
a series experimental works in CBD, including the cross-validation of a component
metrics set for JavaBeans, a case study on the influence of practitioners expertise in
a sub-process of component development (component code inspections), and an ob-
servational study on reusability patterns of pluggable components (Eclipse plug-ins).
These experimental works implied proposing, adapting, or selecting adequate ontolo-
gies, as well as the formal definition of metrics upon each of those ontologies.


Limitations:
Although our experimental work covers a variety of component models
and, orthogonally, both process and product, the plethora of opportunities for using
our quantitative approach to CBD is far from exhausted.


Conclusions:
The main contribution of this dissertation is the illustration, through
practical examples, of how we can combine our experimental process model with
ODM to support the experimental validation of claims in the context of CBD, in a re-
peatable and comparableway. In addition, the techniques proposed in this dissertation
are generic and can be applied to other software development paradigms.

Cunha, Gonçalo, João Lourenço, and Ricardo J. Dias. "Consistent State Software Transactional Memory." IV Jornadas de Engenharia de Electrónica e Telecomunicações e de Computadores (JETC'08). Ed. ISBN: 9789729580949. Lisboa, Portugal: ISEL - Instituto Superior de Engenharia de Lisboa, 2008. 251-256. Abstractjetc_2008.pdf

Software transactional memory (STM) is a promising programming model that adapts many concepts borrowed from the databases world to control concurrent accesses to memory (RAM) locations. In this paper we propose a new classification for the active states of a transaction; a new memory quiescing algorithm, to allow the safe transition of a memory block form transactional to non-transactional space; we compare word and object transactional grain units; and evaluate the cost of consistent state validation, arguing that this cost can be minimized by performing partial validation on problematic code regions.

Rodrigues, Neuza, and António Ramos. "Damage and Diagnosis of Masonry Bridges-A Case Study." 1st Historical Mortars Conference (2008). AbstractWebsite

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Hayashi, S., K. Carpenter, M. Watabe, O. Mateus, and R. Barsbold. "Defensive weapons of thyreophoran dinosaurs: histological comparisons and structural differences in spikes and clubs of ankylosaurs and stegosaurs." Journal of Vertebrate Paleontology. 28.3, Supplement (2008): 89A-90A. Abstracthayashi_et_al_2008_histology_stegosaurs_defensive_weapons_of_thyreophoran_dinosaurs-_histological_comparisons_and_structural_differences_in_spikes_and_clubs_of_ankylosaurs_and_stegosaurs.pdfWebsite

Thyreophoran dinosaurs have spike- and club-shaped osteoderms probably used for defensive weapons. The structural and histological variations have been little known. Here, we provide the comparisons of the internal structures in defensive weapons of ankylosaurs and stegosaurs, using spikes of a polacanthid (Gastonia) and a nodosaurid (Edmontonia), clubs of ankylosaurids (Saichania and Ankylosauridae indet. from Canada), and spikes of stegosaurids (Stegosaurus and Dacentrurus), which sheds light on understandings of evolutionary history and functional implications of defensive weapons in thyreophorans. In ankylosaurs, the structural and histological features of spikes and clubs are similar with those of small osteoderms in having thin compact bones, thick cancellous bones with large vascular canals, and abundant collagen fibers. A previous study demonstrated that each of three groups of ankylosaurs (polacanthid, nodosaurid, and ankylosaurid) has distinct characteristic arrangements of collagen fibers in small osteoderms. This study shows that spikes and clubs of ankylosaurs maintain the same characteristic features for each group despite of the differences in shapes and sizes. Conversely, the spike-shaped osteoderms in primitive (Dacentrurus) and derived (Stegosaurus) stegosaurids have similar structure to each other and are significantly different from the other types of stegosaur osteoderms (throat bony ossicles and plates) in having thick compact bones with a medullary cavity. These lack abundant collagen fibers unlike ankylosaur osteoderms. The spikes of ankylosaurs and stegosaurs are similar in shape, but their structural and histological features are different in having unique structures of collagen fibers for ankylosaurs and thick compact bones for stegosaurs, providing enough strength to have large spikes and to use them as defensive weapons. Although the shapes of ankylosaur clubs are different from spikes, the internal structures are similar, suggesting that ankylosaurs maintain similar structures despite of different shapes in osteoderms. These results indicate that ankylosaurs and stegosaurs used different strategies independently to evolve defensive weapons.