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2009
Mendes, MJ, A. Luque, I. Tobias, and A. Marti. "{Plasmonic light enhancement in the near-field of metallic nanospheroids for application in intermediate band solar cells}." Applied Physics Letters. 95 (2009): 71105. Abstract

In order to enhance infrared light absorption in sub-bandgap transitions in an intermediate band solar cell, the scattered near-field potential from uncoated and coated metallic nanoparticles with a spheroidal shape is calculated with the electrostatic model. The absorption enhancement produced at the surface plasmon frequency of the nanoparticles can be of several orders of magnitude in some cases.

Cruz, J., M. Fonseca, H. Luis, R. Mateus, H. Marques, A. P. Jesus, J. P. Ribeiro, O. M. N. D. Teodoro, and C. Rolfs. "{Production and characterization of thin 7 Li targets fabricated by ion implantation}." Nuclear Inst. and Methods in Physics Research, B. 267 (2009): 478-481. AbstractWebsite

Very high fluence implantation of 7Li+ ions was used to promote the formation of a thin and high density 7Li target in the surface region of Al samples. The implanted volume was characterized by particle induced gamma-ray emission, Rutherford backscattering spectrometry, X-ray photoelectron spectros- copy and nuclear reaction analysis, revealing that the implanted surface is a combination of Li2CO3, metallic lithium, LiOH and C, with almost no Al present. Radiation damage effects by proton beams were studied by observing the evolution of the 7Li(p,a)4He nuclear reaction yield with the accumulated charge, at different proton energies, revealing high stability of the produced Li target.

Marques, H. P., A. R. Canário, A. M. C. Moutinho, and O. M. N. D. Teodoro. "{Tracking hydroxyl adsorption on TiO2 (1 1 0) through secondary emission changes}." Applied Surface Science. 255 (2009): 7389-7393. Abstract

In surface science, rutile TiO2 continues to be one of the most studied surfaces and in the catalysis field numerous groups study how adsorbates interact with this surface. All groups face the difficult problem of reproducibility due to surface preparation unknowns like defect concentration and the continuous aging of the crystals. Recent studies, using STM imaging, showed that hydroxyl adsorption takes place even in very good vacuum conditions. Upon adsorption, the surface electric field is reduced and the work function decreases. We found that this change may be readily detected in the onset energy of the secondary electrons. By following the onset region of secondary electron emission it is possible to track hydroxyl adsorption in quantities well below the detection level of XPS and LEIS. With this knowledge, we show that the time elapsed after surface preparation and water partial pressure should be accounted in the study of TiO2 surfaces.

2008
Gavel, Olga Yu., Sergey A. Bursakov, Giulia Di Rocco, Jose Trincao, Ingrid J. Pickering, Graham N. George, Juan J. Calvete, Valery L. Shnyrov, Carlos D. Brondino, Alice S. Pereira, Jorge Lampreia, Pedro Tavares, Jose J. G. Moura, and Isabel Moura. "A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774." JOURNAL OF INORGANIC BIOCHEMISTRY. 102 (2008): 1380-1395. Abstract
Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the ``LID{''} domain. The sequence (129)Cys-X(5)-His-X(15)-Cys-X(2)-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain. (C) 2008 Elsevier Inc. All rights reserved.
Borges, Rui, Isabel Tissot, Ana Isabel Seruya, Rui JC Silva, Sara Fragoso, Belmira Maduro, and Alexandre Pais. "Gilding and silvering surface decoration techniques, and copper provenance studies of the tomb of D. Afonso of Portugal (15th century)." X-Ray Spectrometry. 37.4 (2008): 338-345. Abstract
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Temtem, M., T. Casimiro, J. F. Mano, and A. Aguiar-Ricardo. "Preparation of membranes with polysulfone/polycaprolactone blends using a high pressure cell specially designed for a CO2-assisted phase inversion." Journal of Supercritical Fluids. 43.3 (2008): 542-548. AbstractWebsite
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Temtem, M., D. Pompeu, T. Casimiro, J. F. Mano, and A. Aguiar-Ricardo. "Supercritical CO 2 generating chitosan membranes and microparticles." 8th World Biomaterials Congress 2008. Vol. 2. 2008. 1033. Abstract
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Fernandes, L., R. Rial-Otero, M. Temtem, C. Veiga de Macedo, A. Aguiar-Ricardo, and J. L. Capelo. "Ultrasonic energy as a tool in the sample treatment for polymer characterization through matrix-assisted laser desorption ionization time-of-flight mass spectrometry." Talanta. 77.2 (2008): 882-888. AbstractWebsite
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Rauter, Amélia P., Alice Martins, Rui Lopes, Joana Ferreira, Luísa M. Serralheiro, Maria-Eduarda Araújo, Carlos Borges, Jorge Justino, Filipa V. Silva, Margarida Goulart, Jane Thomas-Oates, João A. Rodrigues, Emma Edwards, João P. Noronha, Rui Pinto, and Hélder Mota-Filipe. "Bioactivity studies and chemical profile of the antidiabetic plant Genista tenera." Journal of Ethnopharmacology. 122.2 (2008): 384-393.
Antonio, Carla, Carla Pinheiro, Maria Manuela Chaves, Candido Pinto Ricardo, Maria Fernanda Ortuno, and Jane Thomas-Oates. "Analysis of carbohydrates in Lupinus albus stems on imposition of water deficit, using porous graphitic carbon liquid chromatography-electrospray ionization mass spectrometry." Journal of Chromatography A. 1187 (2008): 111-118. AbstractWebsite
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Antonio, Carla, Carla Pinheiro, Maria Manuela Chaves, Candido Pinto Ricardo, Maria Fernanda Ortuno, and Jane Thomas-Oates. "Analysis of carbohydrates in Lupinus albus stems on imposition of water deficit, using porous graphitic carbon liquid chromatography-electrospray ionization mass spectrometry." Journal of Chromatography A. 1187 (2008): 111-118. AbstractWebsite
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Gomes, Catarina, Angelina S. Palma, Rui Almeida, Manuela Regalla, Leo F. McCluskey, John Q. Trojanowski, and Julia Costa. "Establishment of a cell model of ALS disease: Golgi apparatus disruption occurs independently from apoptosis." Biotechnology Letters. 30 (2008): 603-610. Abstract
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Canejo, Joao P., Joao P. Borges, Helena M. Godinho, Pedro Brogueira, Paulo IC Teixeira, and Eugene M. Terentjev. "Helical Twisting of Electrospun Liquid Crystalline Cellulose Micro‐and Nanofibers." Advanced Materials. 20.24 (2008): 4821-4825. Abstract
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Cruz, C., M. H. Godinho, AJ Ferreira, PS Kulkarni, CAM Afonso, and Paulo Ivo Cortez Teixeira. "How foam-like is the shear-induced lamellar phase of an ionic liquid crystal?" Philosophical Magazine Letters. 88.9-10 (2008): 741-747. Abstract
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Gavel, OY, SA Bursakov, G. Di Rocco, J. Trincao, I. J. Pickering, GN George, JJ Calvete, VL Shnyrov, CD Brondino, AS Pereira, J. Lampreia, P. Tavares, JJG Moura, and I. Moura. "A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774." Journal of Inorganic Biochemistry. 102 (2008): 1380-1395. AbstractWebsite

Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the "LID" domain. The sequence (129)Cys-X(5)-His-X(15)-Cys-X(2)-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain. (C) 2008 Elsevier Inc. All rights reserved.

Martins, Assis F., Paulo I. Teixeira, and Helena M. Godinho. "Proceedings of the 9TH European Conference on Liquid Crystals (ECLC 2007) Part I of II Foreword." Molecular Crystals and Liquid Crystals. 494 (2008): VII-VIII. Abstract
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Godinho, M. H., C. Cruz, Paulo Ivo Cortez Teixeira, AJ Ferreira, C. Costa, PS Kulkarni, and CAM Afonso. "Shear‐induced lamellar phase of an ionic liquid crystal at room temperature." Liquid Crystals. 35.2 (2008): 103-107. Abstract
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Godinho, M. H., J. L. Figueirinhas, P. Brogueira, and Paulo Ivo Cortez Teixeira. "Tuneable micro-and nano-periodic structures in urethane/urea networks." Biomimetic and Supramolecular Systems Research (2008). Abstract
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Gavel, Olga Yu, Sergey A. Bursakov, Giulia Di Rocco, Jose Trincao, Ingrid J. Pickering, Graham N. George, Juan J. Calvete, Valery L. Shnyrov, Carlos D. Brondino, Alice S. Pereira, Jorge Lampreia, Pedro Tavares, Jose J. G. Moura, and Isabel Moura. "{A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774}." Journal Of Inorganic Biochemistry. 102 (2008): 1380-1395. Abstract
Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the "LID" domain. The sequence (129)Cys-X-5-His-X-15-Cys-X-2-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain. (C) 2008 Elsevier Inc. All rights reserved.
Albuquerque, Rita, Márcia C. Neves, Maria H. Mendonça, Tito Trindade, and Olinda C. Monteiro. "{Adsorption and catalytic properties of SiO2/Bi2S3 nanocomposites on the methylene blue photodecolorization process}." Colloids and Surfaces A: Physicochemical and Engineering Aspects. 328 (2008): 107-113. Abstract

The decolorization of aqueous solutions methylene blue (C.I. Basic Blue 9), due to the presence of nanocrystalline Bi2S3, supported on SiO2 submicron particles, was investigated here. For this decolorization process, two distinct characteristics, though related, associated to the role of SiO2/Bi2S3 were identified: (i) high methylene blue adsorption capability and (ii) photocatalytic activity to methylene blue photodecolorization. Effects of experimental parameters on the decolorization process, such as methylene blue and nanocomposite concentrations, pH and Bi2S3 particle size were investigated. The maximum adsorption ability of the SiO2/Bi2S3 was approximately 15.6 mg methylene blue per gram. The complete decolorization of a 16 ppm organic dye solution can be achieved, by an adsorption process, in an extremely short time (less than 5 min), using 1.6 g/L of SiO2/Bi2S3 nanocomposite. The study of the decolorization of the dye by an adsorption-photoassisted decolorization process was carried out by irradiation of a suspension prepared with 100 mL of methylene blue solution (8 ppm) and 50 mg of SiO2/Bi2S3. In these conditions the complete decolorization of the dye, adsorbed and in the solution, was achieved in 40 min. © 2008 Elsevier B.V. All rights reserved.

Neto, V. F., R. Vaz, M. S. A. Oliveira, J. Grácio, N. Ali, C. A. A. Ghumman, and O. M. N. D. Teodoro. "{Carbon diffusion into steel during diamond chemical vapour deposition}." International journal of nanomanufacturing. 2 (2008): 192-203. Abstract

In this study, we investigate the diffusion of carbon (C) and other elements into steel substrates (Impax Supreme™) during diamond chemical vapour deposition (CVD). The substrate temperature varied from 700 to 850ºC by plasma power manipulations to enable the correlation of substrate temperature with diffusion length and depth of the above mentioned critical elements into steel during film growth conditions. Methane concentration is also a parameter which has been considered during the parametric analysis. The crystalline compounds formed during the diamond growth process were studied using XRD analysis. In addition, SIMS technique is used with depth profiling to monitor the diffusion of elements induced by the process. The results obtained enabled to improve traditional understanding about the mechanisms relating to diamond deposition on steel substrates using CVD processes.

Luque, A., A. Marti, MJ Mendes, and I. Tobias. "{Light absorption in the near field around surface plasmon polaritons}." Journal of Applied Physics. 104 (2008): 8. Abstract

A semiclassical method is developed to calculate the energy absorption of an electronic system located in the near field of a metal nanoparticle sustaining surface plasmons. The results are found to be similar to those of photon absorption from ordinary transversal radiation. However, they are affected by a geometrical factor that can increase the absorption by several orders of magnitude. As example, we investigate ellipsoidal-shaped metal nanoparticles which, under favorable conditions, may provide near field aborption enhancements almost as large as 10(4), and in many cases above 10. (C) 2008 American Institute of Physics. [DOI: 10.1063/1.3014035]

Moutinho, A. M. C., O. M. N. D. Teodoro, H. P. Marques, and A. R. Cana. "{Work function changes in the Ag deposition on TiO 2 ( 110 )}." Vacuum. 82 (2008): 1425-1427. Abstract

In this study, changes in the TiO2 (110) work function where followed during Ag deposition in the sub- monolayer regime. Changes in the surface are readily detected as changes in the work function. Significant differences where found in measurements at room temperature and at liquid nitrogen temperature, which can be attributed to differences in the growth mode at those temperatures. The observed work function lowering is evidence of dipole formation by Ag clusters on the TiO2 surface. Since the size and shape of these clusters depend on the surface temperature the differences on the work function variation should be related with the polarization induced by the shape of such clusters.

2007
Pereira, A., P. Tavares, F. Folgosa, R. Almeida, I. Moura, and J. Moura. "{Superoxide reductases}." European Journal of Inorganic Chemistry (2007): 2569-2581. Abstract
Reactive oxygen species (ROS), when in excess, are among the most deleterious species an organism can deal with. The physiological effects of ROS include amino acid chain cleavage, DNA degradation and lipid oxidation, among others. They can be formed in the cytoplasm in a variety of ways, including autooxidation reactions (FMN- and FAD-containing enzymes) and Fenton reactions as a result of the cytoplasmatic pool of iron ions. The superoxide anion (021, despite its short half-life in solution, is particularly pernicious as it can form other reactive ROS (such as the strong oxidant peroxynitrite) or oxidize and/or reduce cellular components. For strict anaerobic or microaerophilic bacteria it is of particular importance to be able to dispose of ROS in a controlled manner, especially if these organisms are temporarily exposed to air. This review aims to describe the structural characteristics of superoxide reductases (SORs) and mechanistic aspects of biological superoxide anion reduction. SORs can be considered the main class of enzymes behind the oxygen detoxification pathway of anaerobic and microaerophilic bacteria. The geometry of the active site (three classes have been described), the possible electron donors in vivo and the current hypothesis for the catalytic mechanism will be discussed. Some phylogenetic considerations are presented, regarding the primary structure of SORs currently available in genome databases. ((c) Wiley-VCH Verlag GmbH {&} Co. KGaA, 69451 Weinheim, Germany, 2007).
Pauleta, S. R., A. G. Duarte, M. S. Carepo, AS Pereira, P. Tavares, I. Moura, and J. J. Moura. "NMR assignment of the apo-form of a Desulfovibrio gigas protein containing a novel Mo-Cu cluster." Biomol NMR Assign. 1 (2007): 81-3. AbstractWebsite

We report the 98% assignment of the apo-form of an orange protein, containing a novel Mo-Cu cluster isolated from Desulfovibrio gigas. This protein presents a region where backbone amide protons exchange fast with bulk solvent becoming undetectable. These residues were assigned using 13C-detection experiments.