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2018
Isufi, Brisid, António Pinho Ramos, and Válter Lúcio. "Reversed horizontal cyclic loading tests of flat slab specimens with studs as shear reinforcement." Structural Concrete (2018). AbstractWebsite

The results of a series of experiments on four reinforced concrete flat slab specimens with shear studs and a control specimen without any shear reinforcement are presented. The specimens were tested under constant gravity loads and reversed horizontal cyclic displacements. The main test variables were the applied gravity load and the number of perimeters of studs. One of the specimens was tested in two phases to study the postearthquake behavior. Results showed a considerable improvement of the deformation capacity of specimens with studs compared to the reference specimen. In agreement with previous research, increasing the applied gravity shear ratio resulted in a lower experimental drift capacity. It is shown that a better explanation of the observed ultimate drifts can be made by considering also the flexural capacity and the extent of shear reinforcement. The specimen tested in two phases exhibited considerable residual capacity, even after severe horizontal loading.

Rybarczyk, Y., Kleine Deters, J., Cointe, C., and Esparza D. "Smart Web-based platform to support physical rehabilitation." Sensors. 18.5 (2018): 1344.Website
Ribeiro, Cátia, and Octávio Mateus Stratigraphic position of the Late Jurassic tetrapods from Porto Dinheiro (Lourinhã, Portugal). 1st Palaeontological Virtual Congress, .http://palaeovc.uv.es., 2018. Abstractribeiro_mateus_palaeovc2018_abstract-20181112.pdf

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Branco, Paula S., Daniela Peixoto, Margarida Figueiredo, Gabriela Malta, Catarina Roma-Rodrigues, Pedro Viana Batista, Alexandra R. Fernandes, Sónia Barroso, Ana Luisa Carvalho, Carlos A. M. Afonso, and Luísa Maria Ferreira. "Synthesis, cytotoxicity evaluation in human cell lines and in vitro DNA interaction of a hetero arylidene-9(10H)-anthrone." European Journal of Organic Chemistry (2018): n/a–n/a. AbstractWebsite

A new and never yet reported hetero arylidene-9(10H)-anthrone structure (4) was unexpectedly isolated on reaction of 1,2-dimethyl-3-ethylimidazolium iodide (2) and 9-anthracenecarboxaldehyde (3) under basic conditions. Its structure was unequivocally attributed by X-ray crystallography. No cytotoxicity in human healthy fibroblasts and in two different cancer cell lines was observed indicating its applicability in biological systems. Compound 4 interacts with CT-DNA by intercalation between the adjacent base pairs of DNA with a high binding affinity (Kb = 2.0(± 0.20) x 105 M-1) which is 10x higher than that described for doxorubicin (Kb = 3.2 (±0.23) × 104 M-1). Furthermore, compound 4 quenches the fluorescence emission of GelRed-CT-DNA system with a quenching constant (KSV) of 3.3(±0.3) x 103 M-1 calculated by the Stern-Volmer equation.

Rocha, H., and F. Viseu Teachers’ perspectives on the use of technology to teach Functions at lower and upper secondary. Proceedings of the 5th ERME Topic Conference - MEDA 2018. Copenhagen, Denmark: ERME, 2018. Abstractmeda_rocha_2018.pdf

This study aims to understand the perceptions of lower and upper secondary age teachers of mathematics regarding the use of technology to teach functions. For that, a mixed methodology was adopted, and the perceptions of 129 teachers were collected through a questionnaire (quantitative section) and four teachers through an interview (qualitative section). The main conclusions point to similarities in teachers' perceptions, but also to some differences related to the level that they taught. Teachers show conviction about their knowledge on technology and about the potential of technology in what concerns their teaching and the students’ learning. However, they are not so clear about the best way to articulate technology and paper-and-pencil methods, nor about the use of technology in assessment.

Rybarczyk, Y., Leconte, L., Pérez Medina, J., Jimenes, K., Acosta-Vargas, P., and Esparza D. "Telerehabilitation platform for post-arthroplasty recovery: a Dynamic Time Warping approach." 3rd IEEE ETCM. Cuenca, Ecuador 2018.
Ferrás, L., N. Ford, L. Morgado, M. Rebelo, G. H. Mckinley, and J. Nóbrega. "Theoretical and Numerical Analysis of Unsteady Fractional Viscoelastic Flows in Simple Geometries." Computers & Fluids. 174 (2018): 14-33.
Acosta-Vargas, P., Rybarczyk, Y., Pérez Medina, J., González, M., Jimenes, K., Leconte, L., and Esparza D. "Towards Web accessibility in telerehabilitation platforms." 3rd IEEE ETCM. Cuenca, Ecuador 2018.
Casimiro, A., and C. Rodrigo. "Variational Integrators for reduced field equations." Statistics, Optimization and Information Computing. 6.1 (2018): 86-115.
Gomes, Ana Sara, Filipa Trovão, Benedita Andrade Pinheiro, Filipe Freire, Sara Gomes, Carla Oliveira, Lucília Domingues, Maria João Romão, Lucília Saraiva, and Ana Luísa Carvalho. "The Crystal Structure of the R280K Mutant of Human p53 Explains the Loss of DNA Binding." International Journal of Molecular Sciences. 19 (2018). AbstractWebsite

The p53 tumor suppressor is widely found to be mutated in human cancer. This protein is regarded as a molecular hub regulating different cell responses, namely cell death. Compelling data have demonstrated that the impairment of p53 activity correlates with tumor development and maintenance. For these reasons, the reactivation of p53 function is regarded as a promising strategy to halt cancer. In the present work, the recombinant mutant p53R280K DNA binding domain (DBD) was produced for the first time, and its crystal structure was determined in the absence of DNA to a resolution of 2.0 Å. The solved structure contains four molecules in the asymmetric unit, four zinc(II) ions, and 336 water molecules. The structure was compared with the wild-type p53 DBD structure, isolated and in complex with DNA. These comparisons contributed to a deeper understanding of the mutant p53R280K structure, as well as the loss of DNA binding related to halted transcriptional activity. The structural information derived may also contribute to the rational design of mutant p53 reactivating molecules with potential application in cancer treatment.

Rotatori, FM, M. Moreno-Azanza, and O. Mateus Dryosaurid ornithopods from the Late Jurassic of Portugal: an overview. XVI Annual Meeting of the European Association of Vertebrate Palaeontologists. Caparica, Portugal June 26th-July 1st, 2018: Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, 2018. Abstract

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Reynders, G., R. Amaral Lopes, A. Marszal-Pomianowska, D. Aelenei, J. Martins, and D. Saelens. "Energy flexible buildings: An evaluation of definitions and quantification methodologies applied to thermal storage." Energy and Buildings. 166 (2018): 372-390. AbstractWebsite
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Peres, Ricardo Silva, Andre Dionisio Rocha, Paulo Leitao, and Jose Barata. "IDARTS – Towards intelligent data analysis and real-time supervision for industry 4.0." Computers in Industry. 101 (2018): 138-146. AbstractWebsite
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Kumar, Krishan, Márcia Correia, Virgínia R. Pires, Arun Dhillon, Kedar Sharma, Vikky Rajulapati, Carlos M. G. A. Fontes, Ana Luísa Carvalho, and Arun Goyal. "Novel insights into the degradation of β-1,3-glucans by the cellulosome of Clostridium thermocellum revealed by structure and function studies of a family 81 glycoside hydrolase." International Journal of Biological Macromolecules (2018): -. AbstractWebsite

Abstract The family 81 glycoside hydrolase (GH81) from Clostridium thermocellum is a β-1,3-glucanase belonging to cellulosomal complex. The gene encoding \{GH81\} from Clostridium thermocellum (CtLam81A) was cloned and expressed displaying a molecular mass of  82 kDa. CtLam81A showed maximum activity against laminarin (100 U/mg), followed by curdlan (65 U/mg), at pH 7.0 and 75 °C. CtLam81A displayed Km, 2.1 ± 0.12 mg/ml and Vmax, 109 ± 1.8 U/mg, against laminarin under optimized conditions. CtLam81A activity was significantly enhanced by Ca2+ or Mg2+ ions. Melting curve analysis of CtLam81A showed an increase in melting temperature from 91 °C to 96 °C by Ca2+ or Mg2+ ions and decreased to 82 °C by EDTA, indicating that Ca2+ and Mg2+ ions may be involved in catalysis and in maintaining structural integrity. \{TLC\} and MALDI-TOF analysis of β-1,3-glucan hydrolysed products released initially, showed β-1,3-glucan-oligosaccharides degree of polymerization (DP) from \{DP2\} to DP7, confirming an endo-mode of action. The catalytically inactive mutant CtLam81A-E515A generated by site-directed mutagenesis was co-crystallized and tetragonal crystals diffracting up to 1.4 Å resolution were obtained. CtLam81A-E515A contained 15 α-helices and 38 β-strands forming a four-domain structure viz. a β-sandwich domain I at N-terminal, an α/β-domain II, an (α/α)6 barrel domain III, and a small 5-stranded β-sandwich domain IV.

Lapi, M., H. Fernandes, M. Orlando, a Ramos, and V. Lúcio. "Performance assessment of flat slabs strengthened with a bonded reinforced-concrete overlay." Magazine of Concrete Research. 70 (2018): 433-451. AbstractWebsite
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Pinheiro, C., IC Ribeiro, V. Reisinger, S. Planchon, M. M. Veloso, J. Renaut, L. Eichacker, and C. P. Ricardo. "Salinity effect on germination, seedling growth and cotyledon membrane complexes of a Portuguese salt marsh wild beet ecotype." Theoretical and Experimental Plant Physiology. 30 (2018): 113-127. AbstractWebsite
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Ribeiro, Diana O., Benedita A. Pinheiro, Ana Luisa Carvalho, and Angelina S. Palma. "Targeting protein-carbohydrate interactions in plant cell-wall biodegradation: the power of carbohydrate microarrays." Carbohydrate Chemistry: Chemical and Biological Approaches Volume 43. Vol. 43. The Royal Society of Chemistry, 2018. 159-176. Abstract

The plant cell-wall is constituted by structurally diverse polysaccharides. The biodegradation of these is a crucial process for life sustainability. Cellulolytic microorganisms are highly efficient in this process by assembling modular architectures of carbohydrate-active enzymes with appended non-catalytic carbohydrate-binding modules (CBMs). Carbohydrate microarrays offer high-throughput and sensitive tools for uncovering carbohydrate-binding specificities of CBMs{,} which is pivotal to understand the function of these modules in polysaccharide biodegradation mechanisms. Features of this technology will be here briefly reviewed with highlights of microarray approaches to study plant-carbohydrates and CBM-carbohydrate interactions{,} along with an overview of plant polysaccharides and microorganisms strategies for their recognition.

Romano, R., L. Aelenei, D. Aelenei, and E. S. Mazzucchelli. "What is an adaptive façade? Analysis of recent terms and definitions from an international perspective." Journal of Facade Design and Engineering. 6 (2018): 065-076. AbstractWebsite
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Diaz Fernandez, P., et al. "{Quasifree ( p,pN) scattering of light neutron-rich nuclei near N=14}." Physical Review C. 97 (2018): 1459. Abstract
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de J Mangueze, Adilson V., Maria F. G. Pessoa, Maria J. Silva, Alexis Ndayiragije, Hilário E. Magaia, Viriato S. I. Cossa, Fernando H. Reboredo, Maria L. Carvalho, José P. Santos, Mauro Guerra, ANA I. RIBEIRO-BARROS, Fernando C. Lidon, and José C. Ramalho. "{Simultaneous Zinc and selenium biofortification in rice. Accumulation, localization and implications on the overall mineral content of the flour}." Journal of Cereal Science. 82 (2018): 34-41. Abstract
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Schmidt, S., M. Willig, J. Haack, R. Horn, A. Adamczak, Abdou M. Ahmed, F. D. Amaro, P. Amaro, F. Biraben, P. Carvalho, T. L. Chen, L. M. P. Fernandes, T. Graf, M. Guerra, T. W. Hänsch, M. Hildebrandt, Y. - C. Huang, P. Indelicato, L. Julien, K. Kirch, A. Knecht, F. Kottmann, J. J. Krauth, Y. W. Liu, J. Machado, M. Marszalek, C. M. B. Monteiro, F. Nez, J. Nuber, D. N. Patel, E. Rapisarda, J. M. F. dos Santos, J. P. Santos, P. A. O. C. Silva, L. Sinkunaite, J. - T. Shy, K. Schuhmann, I. Schulthess, D. Taqqu, J. F. C. A. Veloso, L. - B. Wang, M. Zeyen, A. Antognini, and R. Pohl. "{The next generation of laser spectroscopy experiments using light muonic atoms}." Journal of Physics: Conference Series. Vol. 1138. 2018. 012010. Abstract
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2017
Kryshtafovych, Andriy, Reinhard Albrecht, Arnaud Baslé, Pedro Bule, Alessandro T. Caputo, Ana Luisa Carvalho, Kinlin L. Chao, Ron Diskin, Krzysztof Fidelis, Carlos M. G. A. Fontes, Folmer Fredslund, Harry J. Gilbert, Celia W. Goulding, Marcus D. Hartmann, Christopher S. Hayes, Osnat Herzberg, Johan C. Hill, Andrzej Joachimiak, Gert-Wieland Kohring, Roman I. Koning, Leila {Lo Leggio}, Marco Mangiagalli, Karolina Michalska, John Moult, Shabir Najmudin, Marco Nardini, Valentina Nardone, Didier Ndeh, Thanh H. Nguyen, Guido Pintacuda, Sandra Postel, Mark J. van Raaij, Pietro Roversi, Amir Shimon, Abhimanyu K. Singh, Eric J. Sundberg, Kaspars Tars, Nicole Zitzmann, and Torsten Schwede. "Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016)." Proteins: Structure, Function, and Bioinformatics (2017). AbstractWebsite

The functional and biological significance of the selected CASP12 targets are described by the authors of the structures. The crystallographers discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP12 experiment. This article is protected by copyright. All rights reserved.

Pohl, Randolf, François Nez, Luis M. P. Fernandes, Marwan Abdou Ahmed, Fernando D. Amaro, Pedro Amaro, François Biraben, João M. R. Cardoso, Daniel S. Covita, Andreas Dax, Satish Dhawan, Marc Diepold, Beatrice Franke, Sandrine Galtier, Adolf Giesen, Andrea L. Gouvea, Johannes Götzfried, Thomas Graf, Theodor W. Hänsch, Malte Hildebrandt, Paul Indelicato, Lucile Julien, Klaus Kirch, Andreas Knecht, Paul Knowles, Franz Kottmann, Julian J. Krauth, Eric-Olivier Le Bigot, Yi-Wei Liu, José A. M. Lopes, Livia Ludhova, Jorge Machado, Cristina M. B. Monteiro, Françoise Mulhauser, Tobias Nebel, Paul Rabinowitz, Joaquim M. F. dos Santos, Jose Paulo Santos, Lukas A. Schaller, Karsten Schuhmann, Catherine Schwob, Csilla I. Szabo, David Taqqu, João F. C. A. Veloso, Andreas Voss, Birgit Weichelt, and Aldo Antognini. "Laser Spectroscopy of Muonic Atoms and Ions." Proceedings of the 12th International Conference on Low Energy Antiproton Physics (LEAP2016). Journal of the Physical Society of Japan, 2017. 1-12. Abstract
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