Pereira, A., P. Tavares, F. Folgosa, R. Almeida, I. Moura, and J. Moura. "
{Superoxide reductases}."
European Journal of Inorganic Chemistry (2007): 2569-2581.
AbstractReactive oxygen species (ROS), when in excess, are among the most deleterious species an organism can deal with. The physiological effects of ROS include amino acid chain cleavage, DNA degradation and lipid oxidation, among others. They can be formed in the cytoplasm in a variety of ways, including autooxidation reactions (FMN- and FAD-containing enzymes) and Fenton reactions as a result of the cytoplasmatic pool of iron ions. The superoxide anion (021, despite its short half-life in solution, is particularly pernicious as it can form other reactive ROS (such as the strong oxidant peroxynitrite) or oxidize and/or reduce cellular components. For strict anaerobic or microaerophilic bacteria it is of particular importance to be able to dispose of ROS in a controlled manner, especially if these organisms are temporarily exposed to air. This review aims to describe the structural characteristics of superoxide reductases (SORs) and mechanistic aspects of biological superoxide anion reduction. SORs can be considered the main class of enzymes behind the oxygen detoxification pathway of anaerobic and microaerophilic bacteria. The geometry of the active site (three classes have been described), the possible electron donors in vivo and the current hypothesis for the catalytic mechanism will be discussed. Some phylogenetic considerations are presented, regarding the primary structure of SORs currently available in genome databases. ((c) Wiley-VCH Verlag GmbH {&} Co. KGaA, 69451 Weinheim, Germany, 2007).
Santos-Silva, Teresa, Joao Miguel Dias, Alain Dolla, Marie-Claire Durand, Luisa L. Goncalves, Jorge Lampreia, Isabel Moura, and Maria Joao Romao. "
Crystal structure of the 16 heme cytochrome from Desulfovibrio gigas: A glycosylated protein in a sulphate-reducing bacterium."
JOURNAL OF MOLECULAR BIOLOGY. 370 (2007): 659-673.
AbstractSulphate-reducing bacteria have a wide variety of periplasmic cytochromes involved in electron transfer from the periplasm to the cytoplasm. HmcA is a high molecular mass cytochrome of 550 amino acid residues that harbours 16 c-type heme groups. We report the crystal structure of HmcA isolated from the periplasm of Desulfovibrio gigas. Crystals were grown. using polyethylene glycol 8K and zinc acetate, and diffracted beyond 2.1 angstrom resolution. A multiple-wavelength anomalous dispersion experiment at the iron absorption edge enabled us to obtain good-quality phases for structure solution and model building. DgHmcA has a V-shape architecture, already observed in HmcA isolated from Desulfovibrio vulgaris Hildenborough. The presence of an oligosaccharide molecule covalently bound to an Asn residue was observed in the electron density maps of DgHmcA and confirmed by mass spectrometry. Three modified monosaccharides appear at the highly hydrophobic vertex, possibly acting as an anchor of the protein to the cytoplasmic membrane. (c) 2007 Elsevier Ltd. All rights reserved.
Polcyn, M., L. Jacobs, A. Schulp, and O. Mateus. "
Halisaurus (Squamata: Mosasauridae) from the Maastrichtian of Angola."
Journal of Vertebrate Paleontology. 27.Suppl. to 3 (2007): 130A.
AbstractRecent fieldwork in the Namibe province in southern Angola yielded cranial and postcranial elements of at least two individuals of the rare and enigmatic mosasaur Halisaurus from a single small excavation. The genus Halisaurus is unique in retaining a primitive configuration of the temporal arcade, specifically a broad, vertically oriented contact between the parietal and the supratemporal. The supratemporal is broadly sutured to the opisthotic and prootic, unlike the condition in varanoids in which the simple lunate element lies between the parietal ramus and the squamosal and does not form a sutural contact with the opisthotic or prootic, but as in other halisaurines retains a plesiomorphic, vertically oriented contact with the parietal rami. The squamosal is lightly built and broadly arched as in Varanus. Comparison with known halisaurines indicates the new material is referable to the species Halisaurus arambourgi.
The locality that yielded the new specimens has also yielded a large number of isolated teeth, bones, articulated, and associated skeletons of Mosasaurus, Prognathodon, Globidens, and Plioplatecarpus, which with Halisaurus comprise a mosasaur assemblage most similar to that reported from the Maastrichtian of Morocco.
Mateus, O. "
Notes and review of the ornithischian dinosaurs of Portugal."
Journal of Vertebrate Paleontology. Vol. 27. Journal of Vertebrate Paleontology, 27. Society of Vertebrate Paleontology, 2007. 114A.
AbstractThe record of ornithischian dinosaurs from Portugal is substantial but incomplete in terms of our understanding of taxonomic composition and details of the anatomy of many forms. New data and reinterpretation of these forms are provided. The basal thyreophoran from the Lower Jurassic (the nomen dubium “Lusitanosaurus liasicus”) is the most primitive dinosaur from Iberia. Concerning the Late Jurassic, new material from the Lourinhã Formation (Kimmeridgian/Tithonian) referable to the stegosaur Dacentrurus provides additional information on the systematic position and osteology.
The new material shows two rows of paired triangular plates, with a notch in the anterior rim. A maxillary of an ankylosaur from the Vale Frades (Lourinhã Fm.) is here reported, but cannot be referable to Dracopelta, the only ankylosaur genus currently known from Portugal. The ornithopod Alocodon kuehnei reported as Middle Jurassic (Callovian) is probably Oxfordian in age. A right dentary (ML768 from Zimbral) from the Lourinhã Formation, Kimmeridgian/Tithonian, and shares affinities with Dryosaurus but possesses more denticulation and no secondary ridges, suggesting the occurrence of a new or unreported species for the Late Jurassic of Portugal, which is here tentatively ascribed to aff. Dryosaurus sp. In summary, the Late Jurassic ornithischians species/genera from Portugal include Dacentrurus armatus, Stegosaurus cf. ungulatus, Dracopelta zbyszewskii, Phyllodon henkeli, Hypsilophodon sp., Alocodon kuehnei, Trimucrodon cuneatus, aff. Dryosaurus and Draconyx loureiroi. The Lower Cretaceous (Hauterivian / Barremian) of Praia das Aguncheiras, in Cabo Espichel, provided a partial left maxillary (CPGP.1.99.7) of a basal iguanodontian that shows affinities with Camptosaurus, and is tentatively assigned to this genus. The maxillary teeth denticles differ from Iguanodon or other Iguanodontoidea because not show mammillations. More material is necessary to validate but, to be true, that would confirm the presence of this genus in the lower Cretaceous. The Iguanodon has been well reported in the Lower Cretaceous of Cabo Espichel.
Moniz, António B., and Tobias Woll Main features of the labour policy in Portugal. Universidade Nova de Lisboa, IET-Research on Enterprise and Work Innovation, Faculty of Science and Technology, 2007.
AbstractIn this working paper is presented information on the Portuguese labour market developed with the support of the European project WORKS-“Work organisation and restructuring in the knowledge society”. Is still a on the process article and thus commentaries are welcome. The structure is based on the following topics: a) The employment policy (Time regimes - time use, flexibility, part-time work, work-life balance -, and the work contracts regimes – wages, contract types, diversity); b) Education and training (skilling outcomes, rules on retraining and further training, employability schemes, transferability of skills); c) Equal opportunities (relevance of equal opportunity regulation for restructuring outcomes, the role of gender and age regulation); d) Restructuring effects (policy on transfer of personnel, policy on redundancies, and participation or voice in restructuring).
Goulão, Miguel, and Fernando Brito Abreu. "
Modeling the Experimental Software Engineering Process."
6th International Conference on the Quality of Information and Communications Technology (QUATIC'2007). Ed. Ricardo Machado. Lisbon, Portugal: IEEE Computer Society, 2007. 77-90.
AbstractReviews on software engineering literature have shown an insufficient experimental validation of claims, when compared to the standard practice in other well-established sciences. Poor validation of software engineering claims increases the risks of introducing changes in the software process of an organization, as the potential benefits assessment is based on hype, rather than on facts. The community lacks highly disseminated experimental best practices. We contribute with a model of the experimental software engineering process that is aligned with recent proposals for best practices in experimental data dissemination. The model can be used in the definition of software engineering experiments and in comparisons among experimental results.