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2007
Gaspar, A., O. Mateus, and F. Almada. "Os argumentos criacionistas em face da evidência científica." Evolução e Criacionismo: Uma Relação Impossível. Lisboa 2007. 197-237. Abstract
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Ferreira, I. M. P. L. V., O. Pinho, M. V. Mota, P. Tavares, A. Pereira, M. P. Goncalves, D. Torres, C. Rocha, and J. A. Teixeira. "Preparation of ingredients containing an ACE-inhibitory peptide by tryptic hydrolysis of whey protein concentrates." International Dairy Journal. 17 (2007): 481-487. AbstractWebsite

This study describes the characterisation of whey protein hydrolysates obtained from tryptic hydrolysis to assess their application as ingredients with angiotensin-converting-enzyme (ACE) inhibitory action. The levels of a-lactalbumin (alpha-la) and P-lactoglobulin (beta-lg) remaining after hydrolysis were quantified. Peptides were separated by RP-HPLC, and Ala-Leu-Pro-Met-His-Ile-Arg (ALPMHIR), the most potent beta-lg-derived ACE-inhibitory peptide was monitored. A correlation curve was established for the production of this peptide as a function of hydrolysis time. Heat-induced gelation of hydrolysates was studied by small-deformation rheology. The gelation times and the strength of the final gels were highly dependent on the degree of hydrolysis. Smaller peptides liberated by hydrolysis contributed to the inability of whey protein hydrolysates to gel. (c) 2006 Elsevier Ltd. All rights reserved.

Chilibon, I., C. Dias, P. Inacio, and J. Marat-Mendes. "PZT and PVDF bimorph actuators." Journal of Optoelectronics and Advanced Materials. 9 (2007): 1939-1943. Abstract
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Martins, C. E., AS Pereira, P. Tavares, C. M. Cordas, F. Folgosa, C. G. Timoteo, S. G. Naik, and BH HUYNH. "Redox states of Nitric Oxide Reductase from Pseudomonas nautica: Kinetic and Spectroscopic characterization." J Biol Inorg Chem. 12 (2007): S83. Abstract
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Araújo, J., and J. D. Mitchell. "Relative ranks in the monoid of endomorphisms of an independence algebra." Monatsh. Math.. 151 (2007): 1-10. AbstractWebsite
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Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Relativistic calculation of Kα hypersatellite line energies and transition probabilities for selected atoms with 12<=Z<=80." Journal of Physics B: Atomic, Molecular and Optical Physics. 40 (2007): 57. AbstractWebsite
The transition probabilities of Kα hypersatellite lines and energy shifts with respect to the corresponding diagram lines are computed using the Dirac–Fock model for several values of atomic number Z throughout the periodic table. The influence of the Breit interaction on the Kα1h/Kα2h line intensity ratio, Kα1h and Kα2h line energy shifts and Kα1h to Kα2h line energy splitting is evaluated. Double-K shell hole threshold values for selected elements with 23 ⩽Z⩽ 30, calculated within the same approach, are compared with available experimental results.
Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Relativistic calculation of K&alpha; hypersatellite line energies and transition probabilities for selected atoms with 12 ≤ Z ≤ 80." Journal of Physics B: Atomic, Molecular and Optical Physics. 40 (2007): 57. AbstractWebsite

The transition probabilities of K&alpha; hypersatellite lines and energy shifts with respect to the corresponding diagram lines are computed using the Dirac&ndash;Fock model for several values of atomic number <I>Z</I> throughout the periodic table. The influence of the Breit interaction on the K&alpha;<SUB>1</SUB><SUP>h</SUP>/K&alpha;<SUB>2</SUB><SUP>h</SUP> line intensity ratio, K&alpha;<SUB>1</SUB><SUP>h</SUP> and K&alpha;<SUB>2</SUB><SUP>h</SUP> line energy shifts and K&alpha;<SUB>1</SUB><SUP>h</SUP> to K&alpha;<SUB>2</SUB><SUP>h</SUP> line energy splitting is evaluated. Double-K shell hole threshold values for selected elements with 23 &les;<I>Z</I>&les; 30, calculated within the same approach, are compared with available experimental results.

Martins, R., P. Barquinha, L. Pereira, I. Ferreira, and E. Fortunato. "Role of order and disorder in covalent semiconductors and ionic oxides used to produce thin film transistors." Applied Physics A. 89.1 (2007): 37-42. Abstract
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Martins, R., Barquinha Pereira Ferreira Fortunato P. L. I. "Role of order and disorder in covalent semiconductors and ionic oxides used to produce thin film transistors." Applied Physics A: Materials Science and Processing. 89 (2007): 37-42. AbstractWebsite

This paper aims to discuss the effect of order and disorder on the electrical performances of covalent silicon semiconductors and ZnO based ionic oxide semiconductors used as active channel layers in thin film transistors. The effect of disorder on covalent semiconductors directly affects their electrical transport properties due to the asymmetric behaviour of sp states, while in ionic oxide semiconductors it is found that this effect is small due to the fact that angular disorder has no effect on the spherical symmetry of s states. To this we must add that the mobility of carriers in both systems is quite different, being also affected by electron-phonon interactions (weak in silicon and strong in ionic oxides leading to formation of polarons). Besides, the impurity doping effect and the presence of vacancies in disordered silicon and in ionic oxides behave differently, which will influence the thin film properties and so, the performances of the devices produced. © 2007 Springer-Verlag.

Martins, R., P. Barquinha, I. Ferreira, L. Pereira, G. GONCALVES, and E. Fortunato. "Role of order and disorder on the electronic performances of oxide semiconductor thin film transistors." Journal of applied physics. 101.4 (2007): 044505-7. Abstract
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Martins, R.b, Barquinha Ferreira Pereira Goņalves Fortunato P. a I. a. "Role of order and disorder on the electronic performances of oxide semiconductor thin film transistors." Journal of Applied Physics. 101 (2007). AbstractWebsite

The role of order and disorder on the electronic performances of n -type ionic oxides such as zinc oxide, gallium zinc oxide, and indium zinc oxide used as active (channel) or passive (drain/source) layers in thin film transistors (TFTs) processed at room temperature are discussed, taking as reference the known behavior observed in conventional covalent semiconductors such as silicon. The work performed shows that while in the oxide semiconductors the Fermi level can be pinned up within the conduction band, independent of the state of order, the same does not happen with silicon. Besides, in the oxide semiconductors the carrier mobility is not bandtail limited and so disorder does not affect so strongly the mobility as it happens in covalent semiconductors. The electrical properties of the oxide films (resistivity, carrier concentration, and mobility) are highly dependent on the oxygen vacancies (source of free carriers), which can be controlled by changing the oxygen partial pressure during the deposition process and/or by adding other metal ions to the matrix. In this case, we make the oxide matrix less sensitive to the presence of oxygen, widening the range of oxygen partial pressures that can be used and thus improving the process control of the film resistivity. The results obtained in fully transparent TFT using polycrystalline ZnO or amorphous indium zinc oxide (IZO) as channel layers and highly conductive poly/nanocrystalline ZGO films or amorphous IZO as drain/source layers show that both devices work in the enhancement mode, but the TFT with the highest electronic saturation mobility and on/off ratio 49.9 cm2 V s and 4.3× 108, respectively, are the ones in which the active and passive layers are amorphous. The ZnO TFT whose channel is based on polycrystalline ZnO, the mobility and on/off ratio are, respectively, 26 cm2 V s and 3× 106. This behavior is attributed to the fact that the electronic transport is governed by the s -like metal cation conduction bands, not significantly affected by any type of angular disorder promoted by the 2p O states related to the valence band, or small amounts of incorporated metal impurities that lead to a better control of vacancies and of the TFT off current. © 2007 American Institute of Physics.

Castanhinha, R., and O. Mateus. "Short review on the marine reptiles of Portugal: ichthyosaurs, plesiosaurs and mosasaurs." Journal of Vertebrate Paleontology. 27(suppl. to 3) (2007): 57. Abstract
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Lanca, M. C., M. Fu, E. Neagu, L. A. Dissado, J. Marat-Mendes, A. Tzimas, and S. Zadeh. "Space charge analysis of electrotherinally aged XLPE cable insulation." Journal of Non-Crystalline Solids. 353 (2007): 4462-4466. AbstractWebsite

Cross-linked polyethylene (XLPE) is currently widely used as an insulating material for power cables due to its good physical properties, however when in use it undergoes an electrical ageing process. Its ability to trap electric charge can give rise to space charge accumulation in the bulk of the polymer and produce localised electric stresses that can lead to cable failure, since the electric field will be increased above the design stress in some regions favouring the initiation of degradation there. In this work the PEA (pulsed electro-acoustic) method was used to compare the charge dynamics in three samples (XLPE cable peelings) aged in different ways (electrothermally in the laboratory, field aged in service and thermally aged in the laboratory). Very different transient behavior was found depending upon the ageing history. This is related to differences in the migration of chemical species in the insulation layer, which are known to act as charge traps. All materials showed heterocharge peaks when the space charge reached stability, the magnitude of which seems to be related to the severity of the ageing. (c) 2007 Elsevier B.V. All rights reserved.

MC, Lanca, Fu M, Neagu E, Dissado LA, Marat-MendeS J, Tzimas A, and Zadeh S. "Space charge analysis of electrothermally aged XLPE cable insulation." Journal of Non-Crystalline Solids. 353.47-51 (2007). AbstractWebsite

Cross-linked polyethylene (XLPE) is currently widely used as an insulating material for power cables due to its good physical properties, however when in use it undergoes an electrical ageing process. Its ability to trap electric charge can give rise to space charge accumulation in the bulk of the polymer and produce localised electric stresses that can lead to cable failure, since the electric field will be increased above the design stress in some regions favouring the initiation of degradation there. In this work the PEA (pulsed electro-acoustic) method was used to compare the charge dynamics in three samples (XLPE cable peelings) aged in different ways (electrothermally in the laboratory, field aged in service and thermally aged in the laboratory). Very different transient behavior was found depending upon the ageing history. This is related to differences in the migration of chemical species in the insulation layer, which are known to act as charge traps. All materials showed heterocharge peaks when the space charge reached stability, the magnitude of which seems to be related to the severity of the ageing.

Godinho, M. H., AC Trindade, J. L. Figueirinhas, LV Melo, and P. Brogueira. "Study of micro and nano surface structures from UV irradiated urethane/urea elastomers." Biomolecular engineering. 24.1 (2007): 97-101. Abstract
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Pereira, AS, P. Tavares, F. Folgosa, R. M. Almeida, I. Moura, and JJG Moura. "Superoxide reductases." European Journal of Inorganic Chemistry (2007): 2569-2581. AbstractWebsite

Reactive oxygen species (ROS), when in excess, are among the most deleterious species an organism can deal with. The physiological effects of ROS include amino acid chain cleavage, DNA degradation and lipid oxidation, among others. They can be formed in the cytoplasm in a variety of ways, including autooxidation reactions (FMN- and FAD-containing enzymes) and Fenton reactions as a result of the cytoplasmatic pool of iron ions. The superoxide anion (021, despite its short half-life in solution, is particularly pernicious as it can form other reactive ROS (such as the strong oxidant peroxynitrite) or oxidize and/or reduce cellular components. For strict anaerobic or microaerophilic bacteria it is of particular importance to be able to dispose of ROS in a controlled manner, especially if these organisms are temporarily exposed to air. This review aims to describe the structural characteristics of superoxide reductases (SORs) and mechanistic aspects of biological superoxide anion reduction. SORs can be considered the main class of enzymes behind the oxygen detoxification pathway of anaerobic and microaerophilic bacteria. The geometry of the active site (three classes have been described), the possible electron donors in vivo and the current hypothesis for the catalytic mechanism will be discussed. Some phylogenetic considerations are presented, regarding the primary structure of SORs currently available in genome databases. ((c) Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2007).

Henriques, J., P. Carvalho, P. Gil, A. Marques, T. Rocha, B. Ribeiro, M. Antunes, R. Sal, and J. Habetha. "Ventricular Arrhythmias Assessment." n/a. n/a 2007. Abstract
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Fortunato, E., P. Barquinha, A. Pimentel, L. Pereira, G. Gonçalves, and R. Martins. "{Amorphous IZO TTFTs with saturation mobilities exceeding 100 cm2/Vs}." physica status solidi (RRL) – Rapid Research Letters. 1 (2007): R34-R36. AbstractWebsite
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Pereira, Luis, Aguas, Hugo, Beckers, and Manfred. "{Characterization of nickel induced crystallized silicon by spectroscopic ellipsornetry}." 910 (2007): 529-534. AbstractWebsite
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Nunes, Y., A. Wemans, H. P. Marques, C. Marques, Q. Ferreira, O. M. N. D. Teodoroa, E. Alvesb, and M. J. P. Maneira. "{Dual DC magnetron cathode co-deposition of ( Al , Ti ) and ( Al , Ti , N ) thin films with controlled depth composition}." Vaccum. 81 (2007): 1503-1506. Abstract

In this work (Al,Ti) and (Al,Ti,N) films with composition gradient in depth starting either with pure Al or pure Ti were deposited on Si, glass and Au at room temperature in a DC magnetron discharge without bias. The plasma parameters, for both custom made cathodes, were determined and the process was real-time controlled to obtain in the plasma the necessary deposition changes in relative metal abundances to get the desired depth profile composition on the films. In this work the process was designed to get a constant gradient for the composition depth profile. The morphology of the films was analysed by SEM while the composition gradients were measured by SIMS, XPS and RBS, confirming preset nominal depth composition profile of the films. To obtain (Al,Ti,N) thin films with gradient depth composition, N2 must be supplied to the discharges. The plasma behaviour is modified in the presence of N2 and the influence on the film characteristics is studied using the same techniques referred above. The (Al,Ti) and (Al,Ti,N) film properties are compared. We succeed in validating the coating technique opening new application possibilities.

Marques, Hugo P., David C. Alves, Ana R. Canário, Augusto M. C. Moutinho, and Orlando M. N. D. Teodoro. "{High performance temperature controlled UHV sample holder.}." The Review of scientific instruments. 78 (2007): 035103. AbstractWebsite

A requirement of many surface science studies is the capability to alter a sample temperature in a controlled mode. Sample preparation procedures such as heating or cooling ramps, high temperature spikes, fast annealing, or simply maintaining a sample at a very high, or very low, temperature are common. To address these issues, we describe the design and the construction of a multipurpose sample holder. Key points of this design are operation in an extended temperature range from liquid nitrogen (LN(2)) temperature to approximately 1300 K, temperature control during heating and cooling, low thermal inertia with rates up to 50 K s(-1) (heating) and -20 K s(-1) (cooling), and small heated volume to minimize background problems in thermal desorption spectroscopy (TDS) spectra. With this design the sample can be flash heated from LN(2) temperature to 1300 K and cooled down again in less than 100 s. This sample holder was mounted and tested in a multitechnique apparatus and adds a large number of sample preparation procedures as well as TDS to the list of already available surface analysis techniques.

Teodoro, O. M. N. D. Ã., A. M. C. Moutinho, H. P. Marques, and A. R. Cana. "{Metal vapour source with real-time sub-monolayer control}." Vaccum. 81 (2007): 1529-1531. Abstract

To achieve highly accurate controlled depositions a specially designed vapour source, for metals with low to medium melting temperature, was developed. A quartz crystal microbalance is fitted inside the evaporation chamber to provide real-time rate and thickness monitoring. A carefully planned geometry allows maintaining a small deposition area centred on the sample without compromising flow rate measurements. Dosing rates as low as 0.02 ML/min are easily achieved, therefore providing true sub-monolayer control. This source was tested and calibrated for Ag and is being successfully used to study the growth of Ag clusters on TiO2.

Pauleta, Sofia R., Americo G. Duarte, Marta S. Carepo, Alice S. Pereira, Pedro Tavares, Isabel Moura, and Jose J. G. Moura. "{NMR assignment of the apo-form of a Desulfovibrio gigas protein containing a novel Mo-Cu cluster}." Biomolecular Nmr Assignments. 1 (2007): 81-83. Abstract
We report the 98% assignment of the apo-form of an orange protein, containing a novel Mo-Cu cluster isolated from Desulfovibrio gigas. This protein presents a region where backbone amide protons exchange fast with bulk solvent becoming undetectable. These residues were assigned using C-13-detection experiments.
Martins, R., P. Barquinha, I. Ferreira, L. Pereira, G. Gonçalves, and E. Fortunato. "{Role of order and disorder on the electronic performances of oxide semiconductor thin film transistors}." Journal of Applied Physics. 101 (2007): 044505. AbstractWebsite
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