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Submitted
Jones, D. B., E. Ali, C. G. Ning, F. Ferreira da Silva, O. Ingolfsson, M. C. A. Lopes, H. S. Chakraborty, D. H. Madison, and M. J. Brunger. "{A dynamical (e,2e) investigation into the ionization of the outermost orbitals of R-carvone}." {JOURNAL OF CHEMICAL PHYSICS}. {151} (Submitted). Abstract
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Ferreira da Silva, F., G. Meneses, O. Ingolfsson, and P. Limao-Vieira. "{Side chain effects in reactions of the potassium-tyrosine charge transfer complex}." {CHEMICAL PHYSICS LETTERS}. {662} (Submitted): {19-24}. Abstract
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da Silva, Filipe Ferreira, Carolina Matias, Diogo Almeida, Gustavo Garcia, Oddur Ingolfsson, Helga Dogg Flosadottir, Benedikt Omarsson, Sylwia Ptasinska, Benjamin Puschnigg, Paul Scheier, Paulo Limao-Vieira, and Stephan Denifl. "{NCO-, a Key Fragment Upon Dissociative Electron Attachment and Electron Transfer to Pyrimidine Bases: Site Selectivity for a Slow Decay Process}." {JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY}. {24} (Submitted): {1787-1797}. Abstract
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Ferreira, Ana R., Joao M. L. Dias, Ana P. Teixeira, Nuno Carinhas, Rui M. C. Portela, Ines A. Isidro, Moritz von Stosch, and Rui Oliveira. "{Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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da Silva, Filipe Ferreira, Rachel M. Thorman, Ragnar Bjornsson, Hang Lu, Lisa McElwee-White, and Oddur Ingolfsson. "{Dissociation of the FEBID precursor cis-Pt(CO)(2)Cl-2 driven by low-energy electrons}." {PHYSICAL CHEMISTRY CHEMICAL PHYSICS}. {22} (Submitted): {6100-6108}. Abstract
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Isidro, Ines A., Ana R. Ferreira, Joao J. Clemente, Antonio E. Cunha, and Rui Oliveira. "{Analysis of culture media screening data by projection to latent pathways: The case of Pichia pastoris X-33}." {JOURNAL OF BIOTECHNOLOGY}. {217} (Submitted): {82-89}. Abstract
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Lu, Hang, Julie Spencer, Filipe Ferreira da Silva, Oddur Ingolfsson, Howard Fairbrother, and Lisa McElwee-Whiter. "{Investigation of Pt(II) precursors for electron beam-induced deposition of Pt nanostructures}." {ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY}. {256} (Submitted). Abstract
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Isidro, Ines A., Ana R. Ferreira, Joao J. Clemente, Antonio E. Cunha, Joao M. L. Dias, and Rui Oliveira. "{Design of Pathway-Level Bioprocess Monitoring and Control Strategies Supported by Metabolic Networks}." {MEASUREMENT, MONITORING, MODELLING AND CONTROL OF BIOPROCESSES}. Eds. CF {Mandenius, and NJ} TitchenerHooker. Vol. {132}. {Advances in Biochemical Engineering-Biotechnology}, {132}. Submitted. {193-215}. Abstract
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Mauracher, Andreas, Harald Schoebel, Filipe Ferreira da Silva, Achim Edtbauer, Christian Mitterdorfer, Stephan Denifl, Tilmann D. Maerk, Eugen Illenberger, and Paul Scheier. "{Electron attachment to trinitrotoluene (TNT) embedded in He droplets: complete freezing of dissociation intermediates in an extended range of electron energies}." {PHYSICAL CHEMISTRY CHEMICAL PHYSICS}. {11} (Submitted): {8240-8243}. Abstract
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Ferreira da Silva, F., R. Thorman, H. Lu, L. McElwee-White, and O. Ingolfsson. "{Pt(CO)(2)Cl-2 fragmentation upon low energy electron interactions}." {XXX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2017)}. Eds. A. {Bray, S. Hodgman, J. Machacek, and A. } Kheifets. Vol. {875}. {Journal of Physics Conference Series}, {875}. Submitted. Abstract
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2023
Coelho, Beatriz J., Joana V. Pinto, Jorge Martins, Ana Rovisco, Pedro Barquinha, Elvira Fortunato, Pedro V. Baptista, Rodrigo Martins, and Rui Igreja. "{Parylene C as a Multipurpose Material for Electronics and Microfluidics}." Polymers. 15 (2023): 2277. AbstractWebsite

Poly(p-xylylene) derivatives, widely known as Parylenes, have been considerably adopted by the scientific community for several applications, ranging from simple passive coatings to active device components. Here, we explore the thermal, structural, and electrical properties of Parylene C, and further present a variety of electronic devices featuring this polymer: transistors, capacitors, and digital microfluidic (DMF) devices. We evaluate transistors produced with Parylene C as a dielectric, substrate, and encapsulation layer, either semitransparent or fully transparent. Such transistors exhibit steep transfer curves and subthreshold slopes of 0.26 V/dec, negligible gate leak currents, and fair mobilities. Furthermore, we characterize MIM (metal–insulator–metal) structures with Parylene C as a dielectric and demonstrate the functionality of the polymer deposited in single and double layers under temperature and AC signal stimuli, mimicking the DMF stimuli. Applying temperature generally leads to a decrease in the capacitance of the dielectric layer, whereas applying an AC signal leads to an increase in said capacitance for double-layered Parylene C only. By applying the two stimuli, the capacitance seems to suffer from a balanced influence of both the separated stimuli. Lastly, we demonstrate that DMF devices with double-layered Parylene C allow for faster droplet motion and enable long nucleic acid amplification reactions.

Machado, Jorge, Nancy Paul, Gabrielle Soum-Sidikov, Louis Duval, Stéphane Macé, Robert Loetzsch, Martino Trassinelli, and Paul Indelicato. "Absolute measurement of the relativistic magnetic dipole transition in He-like sulfur." Physical Review A. 107 (2023): 032821. AbstractWebsite
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Ito, Yoshiaki, Tatsunori Tochio, Michiru Yamashita, Sei Fukushima, Takashi Shoji, Katarzyna Słabkowska, Łukasz Syrocki, Marek Polasik, Jana Padežnik Gomilsek, José Pires Marques, Jorge Miguel Sampaio, Mauro Guerra, Jorge Machado, José Paulo Santos, Assala Hamidani, Abdelhalim Kahoul, Paul Indelicato, and Fernando Parente. "Intensity Ratio of Kβ/Kα in Selected Elements from Mg to Cu, and the Chemical Effects of Cr Kα1,2 Diagram Lines and Cr Kβ/Kα Intensity Ratio in Cr Compounds." International Journal of Molecular Sciences. 24 (2023): 5570. Abstract

K$_{\alpha , \beta}$ X-ray lines from photon excitation were measured in selected elements from Mg to Cu using a high-resolution double-crystal X-ray spectrometer with a proportional counter, and the K$_beta$/K$_\alpha$ intensity ratio for each element was obtained, after correcting for self-absorption, detection efficiency, and crystal reflectance. This intensity ratio increases rapidly from Mg to Ca but, in the 3d elements region, the increase becomes slower. This is related to the intensity of the Kβ line involving valence electrons. The slow increase of this ratio in the 3d elements region is thought to be due to the correlation between 3d and 4s electrons. Moreover, the chemical shifts, FWHM, asymmetry indices, and Kβ/Kα intensity ratios of the Cr compounds, due to different valences, were also investigated using the same double-crystal X-ray spectrometer. The chemical effects were clearly observed, and the Kβ/Kα intensity ratio was found to be compound-dependent for Cr.

Pinheiro, Daniel, André Fernandes, César Godinho, Jorge Machado, Gonçalo Baptista, Filipe Grilo, Luís Sustelo, Jorge M. Sampaio, Pedro Amaro, Roberta G. Leitão, José P. Marques, Fernando Parente, Paul Indelicato, Miguel de Avillez, José Paulo Santos, and Mauro Guerra. "K- and L-shell theoretical fluorescence yields for the Fe isonuclear sequence." Radiation Physics and Chemistry. 203 (2023): 110594. Abstract

In this work, we present K- and L- shell fluorescence yield values of the full isonuclear sequence of Fe ions, using a state-of-the-art multiconfiguration Dirac–Fock approach. These results may be of importance for spectral fitting and plasma modeling, both in laboratory and astrophysical studies, where Fe is an important benchmark element. The K-shell fluorescence yields were found to be very similar up to the removal of 14 electrons.

Coimbra, Rute, Miguel Moreno-Azanza, Lope Ezquerro, Carmen Nuñez-Lahuerta, José Manuel Gasca, Adrian Immenhauser, Octávio Mateus, and Fernando Rocha. "Evaluating and comparing geochemical sampling protocols in dinosaur eggshells: refining Cretaceous ecosystem research." Cretaceous Research (2023): 105632. Abstractsingle_file_coimbra_et_al._2023_cretresearch.pdfWebsite

The geochemical signatures of dinosaur eggshells represent well-established proxies in paleoenvironmental and paleobiological research. The variable sampling procedures reported in the literature, however, deserve attention. In order to evaluate the impact of different sampling methodologies on carbon and oxygen isotope and elemental concentrations, grinding was contrasted with drilling to extract powder samples from eggshell fragments collected at several locations. Eggshell data were further contrasted with surface materials, encasing matrix and compared with independent proxies using petrographic and elemental techniques. Iron and manganese elemental concentrations revealed an enrichment sequence depending on the sampling strategy for the same eggshell fragment. This pattern can be mistaken for a variable state of preservation. In contrast, carbon and oxygen isotope values exhibited only subtle differences and lacked clear trends. This suggests that isotope data are less susceptible to different methodological approaches. It is shown that drilling offers a wider range of possibilities compared to grinding (e.g., faster and less destructive). Additionally, drilled powder samples can confidently be used for elemental and isotope analysis, excluding contamination, thus providing a more accurate set of proxy data from eggshell archives.

Díaz, Rafael Sanabria, Brisid Isufi, Leandro Mouta Trautwein, and António Pinho Ramos. "Nonlinear analysis of flat slab-column connections to optimize the use of HPFRC under monotonic vertical loading." Structural Concrete. 24 (2023): 5787-5807. AbstractWebsite
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Ramos, António, Brisid Isufi, and Rui Marreiros. "SEISMIC BEHAVIOR OF SLAB–COLUMN CONNECTIONS USING HIGH PERFORMANCE FIBER REINFORCED CONCRETES." American Concrete Institute, ACI Special Publication. Vol. SP-357. 2023. 123-138. Abstract
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Ramos, António Pinho, Brisid Isufi, Rui Marreiros, Dario Coronelli, Teresa Netti, Marco Lamperti Tornaghi, Georgios Tsionis, and Aurelio Muttoni. "Seismic Performance of Strengthened Slab-Column Connections in a Full-Scale Test." Journal of Earthquake Engineering. 27 (2023): 2299-2318. AbstractWebsite
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Duval, Louis, Rοbert Loetzsch, Heinrich Beyer, Dariusz Banaś, Perla Dergham, Jan Glorius, Robert E. Grisenti, Mauro Guerra, Alexandre Gumberidze, Pierre-Michel Hillenbrand, Paweł Jagodziński, Emily Lamour, Yuri Litvinov, Jorge Machado, Gerhard Paulus, Nancy Paul, Nikolaos Petridis, Jose-Paulo Santos, Marius Scheidel, Ragandeep S. Sidhu, Uwe Spillmann, Sébastien Steydli, Karol Szary, Sergiy Trotsenko, Ingo Uschmann, Günther Weber, Thomas Stöhlker, Paul Indelicato, and Martino Trassinelli. "{X-ray spectroscopy of few-electron uranium ions for tests of QED}." Proceedings of FAIR next generation scientists - 7th Edition Workshop — PoS(FAIRness2022). Vol. 419. 2023. 012. Abstract
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2022
Amaro, P., A. Adamczak, Abdou M. Ahmed, L. Affolter, F. D. Amaro, P. Carvalho, T. L. Chen, L. M. P. Fernandes, M. Ferro, D. Goeldi, T. Graf, M. Guerra, T. W. Hänsch, C. A. O. Henriques, Y. C. Huang, P. Indelicato, O. Kara, K. Kirch, A. Knecht, F. Kottmann, Y. W. Liu, J. Machado, M. Marszalek, R. D. P. Mano, C. M. B. Monteiro, F. Nez, J. Nuber, A. Ouf, N. Paul, R. Pohl, E. Rapisarda, J. M. F. dos Santos, J. P. Santos, P. A. O. C. Silva, L. Sinkunaite, J. T. Shy, K. Schuhmann, S. Rajamohanan, A. Soter, L. Sustelo, D. Taqqu, L. B. Wang, F. Wauters, P. Yzombard, M. Zeyen, and A. Antognini. "Laser excitation of the 1s-hyperfine transition in muonic hydrogen." SciPost Physics. 13 (2022). Abstract

The CREMA collaboration is pursuing a measurement of the ground-state hyperfine splitting (HFS) in muonic hydrogen (μp) with 1 ppm accuracy by means of pulsed laser spectroscopy to determine the two-photon-exchange contribution with 2×10-4 relative accuracy. In the proposed experiment, the μp atom undergoes a laser excitation from the singlet hyperfine state to the triplet hyperfine state, then is quenched back to the singlet state by an inelastic collision with a H2 molecule. The resulting increase of kinetic energy after the collisional deexcitation is used as a signature of a successful laser transition between hyperfine states. In this paper, we calculate the combined probability that a μp atom initially in the singlet hyperfine state undergoes a laser excitation to the triplet state followed by a collisional-induced deexcitation back to the singlet state. This combined probability has been computed using the optical Bloch equations including the inelastic and elastic collisions. Omitting the decoherence effects caused by the laser bandwidth and collisions would overestimate the transition probability by more than a factor of two in the experimental conditions. Moreover, we also account for Doppler effects and provide the matrix element, the saturation fluence, the elastic and inelastic collision rates for the singlet and triplet states, and the resonance linewidth. This calculation thus quantifies one of the key unknowns of the HFS experiment, leading to a precise definition of the requirements for the laser system and to an optimization of the hydrogen gas target where μp is formed and the laser spectroscopy will occur.

Isufi, Brisid, João Pedro Relvas, Carla Marchão, and António Pinho Ramos. "Behavior of flat slabs with partial use of high-performance fiber reinforced concrete under monotonic vertical loading." Engineering Structures. 264 (2022). AbstractWebsite
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Muttoni, A., D. Coronelli, M. Lamperti Tornaghi, L. Martinelli, I. R. Pascu, A. Pinho Ramos, G. Tsionis, P. Bamonte, B. Isufi, and A. Setiawan. "Deformation capacity evaluation for flat slab seismic design." Bulletin of Earthquake Engineering. 20 (2022): 1619-1654. AbstractWebsite
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Isufi, Brisid, Carla Marchão, Rui Marreiros, and António Pinho Ramos. "EXPERIMENTAL INVESTIGATION ON THE BEHAVIOUR OF HYBRID HPFRC FLAT SLABS." fib Symposium. 2022. 1870-1879. Abstract
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Ramos, António Pinho, Brisid Isufi, Rui Marreiros, and Carla Marchão. "HYBRID USE OF HPFRC IN SLAB – COLUMN CONNECTIONS UNDER CYCLIC LATERAL LOADING." fib Symposium. 2022. 1880-1889. Abstract
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