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2009
Marques, H. P., A. R. Canário, A. M. C. Moutinho, and O. M. N. D. Teodoro. "{Tracking hydroxyl adsorption on TiO2 (1 1 0) through secondary emission changes}." Applied Surface Science. 255 (2009): 7389-7393. Abstract

In surface science, rutile TiO2 continues to be one of the most studied surfaces and in the catalysis field numerous groups study how adsorbates interact with this surface. All groups face the difficult problem of reproducibility due to surface preparation unknowns like defect concentration and the continuous aging of the crystals. Recent studies, using STM imaging, showed that hydroxyl adsorption takes place even in very good vacuum conditions. Upon adsorption, the surface electric field is reduced and the work function decreases. We found that this change may be readily detected in the onset energy of the secondary electrons. By following the onset region of secondary electron emission it is possible to track hydroxyl adsorption in quantities well below the detection level of XPS and LEIS. With this knowledge, we show that the time elapsed after surface preparation and water partial pressure should be accounted in the study of TiO2 surfaces.

2008
Vitor Rosa, Teresa Aviles, Gabriel Aullon, Berta Covelo, and Carlos Lodeiro. "{A new bis(1-naphthylimino)acenaphthene compound and its Pd(II) and Zn(II) complexes: Synthesis, characterization, solid-state structures and density functional theory studies on the syn and anti isomers}." {INORGANIC CHEMISTRY}. {47} (2008): {7734-7744}. Abstract

{A new rigid bidentate ligand, bis(1-naphthylimino)acenaphthene, L1, and its Zn(II) and Pd(II) complexes {[}ZnCl(2)(L1)], 1, and {[}PdCl(2)(L1)], 2, were synthesized. L1 was prepared by the ``template method{''}, reacting 1-naphthyl amine and acenaphthenequinone in the presence of ZnCl(2), giving 1, which was further demetallated. Reaction of 1-naphthyl amine with acenaphthenequinone and PdCl(2) afforded dichloride bis(1-naphthyl)acenaphthenequinonediimine palladium, 2. L1, 1, and 2 were obtained as a mixture of syn and anti isomers. Compound 2 was also obtained by the reaction of PdCl(2) activated by refluxing it in acetonitrile followed by the addition of L1; by this route also a mixture of syn and anti isomers was obtained, but at a different rate. The solid-state structures of L1 and the anti isomer of compound 2 have been determined by single-crystal X-ray diffraction. All compounds have been characterized by elemental analyses; matrix-assisted laser desorption ionization-time-of-flight-mass spectrometry; IR; UV-vis; (1)H, (13)C, and (1)H-(1)H correlation spectroscopy; (1)H-(13)C heteronuclear single quantum coherence; (1)H-(13)C heteronuclear single quantum coherence-total correlation spectroscopy; and (1)H-(1)H nuclear Overhauser effect spectrometry NMR spectroscopies when applied. Density functional theory studies showed that both conformers for {[}PdCl(2)(BIAN)] are isoenergetic, and they can both be obtained experimentally. However, we can predict that the isomerization process is not available in a square-planar complex, but it is possible for the free ligand. The molecular geometry is very similar in both isomers, and only different orientations for naphthyl groups can be expected.}

Mendes, Vilela R., and Fernanda Cipriano. "A stochastic representation for the Poisson-Vlasov equation." COMMUNICATIONS IN NONLINEAR SCIENCE AND NUMERICAL SIMULATION. 13 (2008): 221-226. Abstract

{A stochastic representation for the solutions of the Poisson-Vlasov equation is obtained. The representation involves both an exponential and a branching process. The stochastic representation, besides providing an alternative existence proof and an intuitive characterization of the solutions, may also be used to obtain an intrinsic definition of the fluctuations. (c) 2007 Elsevier B.V. All rights reserved.}

Chaari, S., F. Cipriano, Soumaya Gheryani, and H. Ouerdiane. "Sanov's Theorem for White Noise Distributions and Application to the Gibbs Conditioning Principle." ACTA APPLICANDAE MATHEMATICAE. 104 (2008): 313-324. Abstract

{We consider a positive distribution Phi such that Phi defines a probability measure mu = mu Phi on the dual of some real nuclear Frechet space. A large deviation principle is proved for the family \{mu(n), n >= 1\} where mu(n) denotes the image measure of the product measure mu(n)(Phi) under the empirical distribution function L(n). Here the rate function I is defined on the space F(theta)'(N')(+) and agrees with the relative entropy function (H) over tilde (Psi/Phi). As an application, we cite the Gibbs conditioning principle which describes the limiting behaviour as n tends to infinity of the law of k tagged particles Y(1),...,Y(k) under the constraint that L(n)(Y) belongs to some subset A(0).}

Fortunato, Elvira, Nuno Correia, Pedro Barquinha, Luis Pereira, Goncalo Goncalves, and Rodrigo Martins. "High-performance flexible hybrid field-effect transistors based on cellulose fiber paper." Ieee Electron Device Letters. 29 (2008): 988-990. AbstractWebsite
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Fortunato, Elvira, Nuno Correia, Pedro Barquinha, LuÍs Pereira, Gon\c{C}alo Goncalves, and Rodrigo Martins. "{High-Performance Flexible Hybrid Field-Effect Transistors Based on Cellulose Fiber Paper}." IEEE Electron Device Letters. 29 (2008): 988-990. AbstractWebsite
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Dell'acqua, S., S. R. Pauleta, E. Monzani, AS Pereira, L. Casella, JJG Moura, and I. Moura. "Electron transfer complex between nitrous oxide reductase and cytochrome c(552) from Pseudomonas nautica: Kinetic, nuclear magnetic resonance, and docking studies." Biochemistry. 47 (2008): 10852-10862. AbstractWebsite

The multicopper enzyme nitrous oxide reductase (N2OR) catalyzes the final step of denitrification, the two-electron reduction of N2O to N-2. This enzyme is a functional homodimer containing two different multicopper sites: CuA and CuZ. CuA is a binuclear copper site that transfers electrons to the tetranuclear copper sulfide CuZ, the catalytic site. In this study, Pseudomonas nautica cytochrome C-552 was identified as the physiological electron donor. The kinetic data show differences when physiological and artificial electron donors are compared [cytochrome vs methylviologen (MV)]. In the presence of cytochrome c(552), the reaction rate is dependent on the ET reaction and independent of the N2O concentration. With MV, electron donation is faster than substrate reduction. From the study of cytochrome c(552) concentration dependence, we estimate the following kinetic parameters: K-mc512 = 50.2 +/- 9.0 mu M and V-maxc551 1.8 +/- 10.6 units/mg. The N2O concentration dependence indicates a K-mN2O of 14.0 +/- 2.9 mu M using MV as the electron donor. The pH effect on the kinetic parameters is different when MV or cytochrome c(552) is used as the electron donor (pK(a) = 6.6 or 8.3, respectively). The kinetic study also revealed the hydrophobic nature of the interaction, and direct electron transfer studies showed that CuA is the center that receives electrons from the physiological electron donor. The formation of the electron transfer complex was observed by H-1 NMR protein-protein titrations and was modeled with a molecular docking program (BiGGER). The proposed docked complexes corroborated the ET studies giving a large number of solutions in which cytochrome c(552) is placed near a hydrophobic patch located around the CuA center.

Moniz, António, and José Miquel Cabeças. "Editorial Note." Enterprise and Work Innovation Studies. 4 (2008): 7-8. AbstractWebsite

No abstract is available for this item.

Martins, Rodrigo, Pedro Barquinha, Luis Pereira, Nuno Correia, Goncalo Goncalves, Isabel Ferreira, and Elvira Fortunato. "Write-erase and read paper memory transistor." Applied Physics Letters. 93 (2008). AbstractWebsite
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Correia, Cristina, Stephane Besson, Carlos D. Brondino, Pablo J. Gonzalez, Guy Fauque, Jorge Lampreia, Isabel Moura, and Jose J. G. Moura. "Biochemical and spectroscopic characterization of the membrane-bound nitrate reductase from Marinobacter hydrocarbonoclasticus 617." JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY. 13 (2008): 1321-1333. Abstract
Membrane-bound nitrate reductase from Marinobacter hydrocarbonoclasticus 617 can be solubilized in either of two ways that will ultimately determine the presence or absence of the small (I) subunit. The enzyme complex (NarGHI) is composed of three subunits with molecular masses of 130, 65, and 20 kDa. This enzyme contains approximately 14 Fe, 0.8 Mo, and 1.3 molybdopterin guanine dinucleotides per enzyme molecule. Curiously, one heme b and 0.4 heme c per enzyme molecule have been detected. These hemes were potentiometrically characterized by optical spectroscopy at pH 7.6 and two noninteracting species were identified with respective midpoint potentials at E(m) = + 197 mV (heme c) and-4.5 mV (heme b). Variable-temperature (4-120 K) X-band electron paramagnetic resonance (EPR) studies performed on both as-isolated and dithionite-reduced nitrate reductase showed, respectively, an EPR signal characteristic of a {[}3Fe-4S](+) cluster and overlapping signals associated with at least three types of {[}4Fe-4S](+) centers. EPR of the as-isolated enzyme shows two distinct pH-dependent Mo(V) signals with hyperfine coupling to a solvent-exchangeable proton. These signals, called ``lowpH'' and ``high-pH,'' changed to a pH-independent Mo(V) signal upon nitrate or nitrite addition. Nitrate addition to dithionite-reduced samples at pH 6 and 7.6 yields some of the EPR signals described above and a new rhombic signal that has no hyperfine structure. The relationship between the distinct EPR-active Mo(V) species and their plausible structures is discussed on the basis of the structural information available to date for closely related membrane-bound nitrate reductases.
Cordas, C. M., I. Moura, and JJG Moura. "Direct electrochemical study of the multiple redox centers of hydrogenase from Desulfovibrio gigas." Bioelectrochemistry. 74.1 (2008): 83-89. AbstractWebsite

Direct electrochemical response was first time observed for the redox centers of Desulfovibrio gigas [NiFe]-Hase, in non-turnover conditions, by cyclic voltammetry, in solution at glassy carbon electrode. The activation of the enzyme was achieved by reduction with H(2) and by electrochemical control and electrocatalytic activity was observed. The inactivation of the [NiFe]-Hase was also attained through potential control. All electrochemical data was obtained in the absence of enzyme inhibitors. The results are discussed in the context of the proposed mechanism currently accepted for activation/inactivation of [NiFe]-Hases. (C) 2008 Elsevier B.V. All rights reserved.

Gavel, Olga Yu., Sergey A. Bursakov, Giulia Di Rocco, Jose Trincao, Ingrid J. Pickering, Graham N. George, Juan J. Calvete, Valery L. Shnyrov, Carlos D. Brondino, Alice S. Pereira, Jorge Lampreia, Pedro Tavares, Jose J. G. Moura, and Isabel Moura. "A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774." JOURNAL OF INORGANIC BIOCHEMISTRY. 102 (2008): 1380-1395. Abstract
Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the ``LID{''} domain. The sequence (129)Cys-X(5)-His-X(15)-Cys-X(2)-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain. (C) 2008 Elsevier Inc. All rights reserved.
Viegas, Aldino, Natercia F. Bras, Nuno M. F. S. A. Cerqueira, Pedro Alexandrino Fernandes, Jose A. M. Prates, Carlos M. G. A. Fontes, Marta Bruix, Maria Joao Romao, Ana Luisa Carvalho, Maria Joao Ramos, Anjos L. Macedo, and Eurico J. Cabrita. "Molecular determinants of ligand specificity in family 11 carbohydrate binding modules - an NMR, X-ray crystallography and computational chemistry approach." Febs Journal. 275 (2008): 2524-2535. Abstract
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dos Santos, Amarante F. P., and C. Cismasiu. "Comparison Between Two {SMA} Constitutive Models for Seismic Applications." Twelfth Conference on Nonlinear Vibrations, Dynamics, and Multibody Systems. Blacksburg, VA 24061 2008. Abstract
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Guerreiro, B. J., C. Silvestre, and R. Cunha. "{Terrain Avoidance Model Predictive Control for Autonomous Rotorcraft}." 17th IFAC World Congress. 2008. 1076-1081. Abstract
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Guerreiro, B. J., C. Silvestre, and R. Cunha. "{Terrain Avoidance Model Predictive Control for Autonomous Rotorcraft}." 17th IFAC World Congress. 2008. 1076-1081. Abstract
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Duarte, Filipe J. S., Eurico J. Cabrita, Gernot Frenking, and Gil Santos. "Mechanistic study of intramolecular aldol reactions of dialdehydes." European Journal of Organic Chemistry (2008): 3397-3402. Abstract
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ER, Neagu, Neagu RM, Dias CJ, Lanca MC, and Marat-Mendes JN. "The determination of the metal-dielectric interface barrier height from the open-circuit isothermal charging current." Journal of Applied Physics. 104 (2008). AbstractWebsite
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Mateus, O., C. Natário, R. Araújo, and R. Castanhinha. "A new specimen of spinosaurid dinosaur aff. Baryonyx from the Early Cretaceous of Portugal." Livro de Resumos do X Congresso Luso-Espanhol de Herpetologia. -. 2008. 51. Abstract

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Rosa, V., S. A. Carabineiro, T. Aviles, P. T. Gomes, R. Welter, J. M. Campos, and M. R. Ribeiro. "Synthesis, characterisation and solid state structures of alpha-diimine cobalt(II) complexes: Ethylene polymerisation tests." J Organomet Chem. 693 (2008): 769-775. AbstractWebsite

A series of cobalt(II) compounds of the type [CoX2(alpha-diimine)] were synthesised by direct reaction of anhydrous CoCl2 or CoI2 and the corresponding alpha-diimine ligand, in CH2Cl2: [CoI2(o,o',p-Me3C6H2-DAB)] ( 1), [ CoI2(o,o'-(Pr2C6H3)-Pr-i-DAB)] ( 2), ( where Ar-DAB = 1,4-bis(aryl)-2,3-dimethyl-1,4-diaza-1,3-butadiene), and [CoCl2(o,o',p-Me3C6H2- BIAN)] (3), [CoCl2(o,o'- (Pr2C6H3)-Pr-i-BIAN)] (4), and [CoI2(o,o'-(Pr2C6H3)-Pr-i-BIAN)] (5) (where Ar-BIAN = bis(aryl) acenaphthenequinonediimine). All compounds were characterised by elemental analyses, IR, mass spectrometry, and X-ray diffraction whenever possible. The crystal structures of compounds 2-4 showed, in all cases, distorted tetrahedral geometries about the Co, built by two halogen atoms and two nitrogen atoms of the alpha-diimine ligand. Compounds 3 and 4, as well as [ CoCl2(o,o',p-Me3C6H2-DAB)] (1a), and [ CoCl2( o,o'- (Pr2C6H3)-Pr-i- DAB)] (2a), were activated by methylaluminoxane (MAO) and tested as catalysts for ethylene polymerisation, showing low catalytic activities. Selected polyethylene ( PE) samples were characterised by H-1 and C-13 NMR and FT-IR spectroscopies, and by differential scanning calorimetry (DSC), revealing branching microstructures (2.5-5.5%). (c) 2007 Elsevier B. V. All rights reserved.

Cordas, C. M., L. T. Guerra, C. Xavier, and JJG Moura. "Electroactive biofilms of sulphate reducing bacteria." Electrochimica Acta. 54.1 (2008): 29-34. AbstractWebsite

Biofilms formed from a pure strain of Desulfovibrio desulfuricans 27774 on stainless steel and graphite polarised surfaces were studied. The polarisation conditions applied were -0.4V vs. SCE for different times. A cathodic current related with the biofilms growth was observed with a maximum intensity of -270 mA m(-2) that remained stable for several days using graphite electrodes. These sulphate reducing bacteria biofilms present electrocatalytic activity towards hydrogen and oxygen reduction reactions. Electrode polarisation has a selective effect on the catalytic activity. The biofilms were also observed by scanning electronic microscopy revealing the formation of homogeneous films on the surfaces. (c) 2008 Elsevier Ltd. All rights reserved.

Cismasiu, Corneliu, and Filipe Amarante P. dos Santos. "Numerical simulation of superelastic shape memory alloys subjected to dynamic loads." Smart Materials and Structures. 17 (2008): 025036 (12pp). AbstractWebsite

Superelasticity, a unique property of shape memory alloys (SMAs), allows the material to recover after withstanding large deformations. This recovery takes place without any residual strains, while dissipating a considerable amount of energy. This property makes SMAs particularly suitable for applications in vibration control devices. Numerical models, calibrated with experimental laboratory tests from the literature, are used to investigate the dynamic response of three vibration control devices, built up of austenitic superelastic wires. The energy dissipation and re-centering capabilities, important features of these devices, are clearly illustrated by the numerical tests. Their sensitivity to ambient temperature and strain rate is also addressed. Finally, one of these devices is tested as a seismic passive vibration control system in a simplified numerical model of a railway viaduct, subjected to different ground accelerations.

Carabineiro, Sonia A., Francisco B. Fernandes, Rui JC Silva, Joaquim S. Vital, Ana M. Ramos, and Isabel M. Fonseca. "N2O reduction by activated carbon over iron bimetallic catalysts." Catalysis Today. 133 (2008): 441-447. Abstract
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Coelho, Denis A., João C. O. Matias, Isilda G. Barata, André Silva, Andreia Campos, Dinis Nunes, and Isabel Nunes Disseminação e apropriação de conhecimento sobre Saúde e Segurança no Trabalho nas PMEs através de aplicação multimédia inovadora incorporando recomendações ergonómicas. Colóquio Internacional sobre Segurança e Higiene Ocupacionais SHO 2008. Universidade do Minho, Guimarães, 2008. Abstract
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