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2009
Castanhinha, R., R. Araujo, and O. Mateus. "Dinosaur eggshell and embryo localities in Lourinhã Formation, Late Jurassic, Portugal." Journal of Vertebrate Paleontology. 29 (2009): 76. Abstract
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Castanhinha, R., R. Araujo, and O. Mateus. "Dinosaur eggshell and embryo localities in Lourinhã Formation, Late Jurassic, Portugal." Journal of Vertebrate Paleontology. 29 (2009): 76. Abstract
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Pereira, R., S. C. Antunes, A. M. M. Gonçalves, S. M. Marques, F. Gonçalves, F. Ferreira, A. C. Freitas, T. A. P. Rocha-Santos, M. S. Diniz, L. Castro, I. Peres, and A. C. Duarte. "The effectiveness of a biological treatment with Rhizopus oryzae and of a photo-Fenton oxidation in the mitigation of toxicity of a bleached kraft pulp mill effluent." Water Research. 43 (2009): 2471-2480. AbstractWebsite
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Diniz, M. S., I. Peres, L. Castro, A. C. Freitas, T. A. P. Rocha-Santos, P. M. Costa, R. Pereira, and A. C. Duarte. "Effects of ECF-Kraft pulp mill effluent treated with fungi (Rhizopus oryzae) on reproductive steroids and liver CYP1A of exposed goldfish (Carassius auratus)." Ecotoxicology. 18 (2009): 1011-1017. AbstractWebsite
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Godinho, M. H., João P. Canejo, P. Brogueira, and Paulo Ivo Cortez Teixeira. "Espirais e Hélices-Do Polímero mais abundante da natureza." Gazeta de Física. 32.4 (2009): 2-6. Abstract
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Gil, P., Alberto Cardoso, and L. Palma. "Estimating the Number of Hidden Neurons in Recurrent Neural Networks for Nonlinear System Identification." IEEE-ISIE 2009 - IEEE International Symposium on Industrial Electronics. n/a 2009. Abstract
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Capsoni, A., and M. {Vicente da Silva}. "A finite element formulation of {Mindlin} plates for limit analysis." Communications in Numerical Methods in Engineering (2009). Abstract
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Cordoyiannis, G., LFV Pinto, M. H. Godinho, Christ Glorieux, and Jan Thoen. "High-resolution calorimetric study of the phase transitions of tridecylcyanobiphenyl and tetradecylcyanobiphenyl liquid crystals." Phase Transitions. 82.3 (2009): 280-289. Abstract
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Costa, P. M., M. S. Diniz, S. Caeiro, J. Lobo, M. Martins, A. M. Ferreira, M. Caetano, C. Vale, T. A. DelValls, and M. H. Costa. "Histological biomarkers in liver and gills of juvenile Solea senegalensis exposed to contaminated estuarine sediments: A weighted indices approach." Aquatic Toxicology. 92 (2009): 202-212. AbstractWebsite
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Godinho, M. H., João P. Canejo, LFV Pinto, J. P. Borges, and Paulo Ivo Cortez Teixeira. "How to mimic the shapes of plant tendrils on the nano and microscale: spirals and helices of electrospun liquid crystalline cellulose derivatives." Soft Matter. 5.14 (2009): 2772-2776. Abstract
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"International Conference on the Geological Collections and Museums: mission and management." Eds. J. Brandao, P. Callapez, O. Mateus, and P. Castro. 2009. Abstract
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Rivas, M. G., C. S. Mota, S. R. Pauleta, M. S. P. Carepo, F. Folgosa, S. L. A. Andrade, G. Fauque, AS Pereira, P. Tavares, JJ Calvete, I. Moura, and JJG Moura. "Isolation and characterization of a new Cu-Fe protein from Desulfovibrio aminophilus DSM12254." Journal of Inorganic Biochemistry. 103 (2009): 1314-1322. AbstractWebsite

The isolation and characterization of a new metalloprotein containing Cu and Fe atoms is reported. The as-isolated Cu-Fe protein shows an UV-visible spectrum with absorption bands at 320 nm, 409 nm and 615 nm. Molecular mass of the native protein along with denaturating electrophoresis and mass spectrometry data show that this protein is a multimer consisting of 14 +/- 1 subunits of 15254.3 +/- 7.6 Da. Mossbauer spectroscopy data of the as-isolated Cu-Fe protein is consistent with the presence of [2Fe-2S](2+) centers. Data interpretation of the dithionite reduced protein suggest that the metallic cluster could be constituted by two ferromagnetically coupled [2Fe-2S](+) spin delocalized pairs. The biochemical properties of the Cu-Fe protein are similar to the recently reported molybdenum resistance associated protein from Desulfovibrio, D. alaskensis. Further-more, a BLAST search from the DNA deduced amino acid sequence shows that the Cu-Fe protein has homology with proteins annotated as zinc resistance associated proteins from Desulfovibrio, D. alaskensis, D. vulgaris Hildenborough, D. piger ATCC 29098. These facts suggest a possible role of the Cu-Fe protein in metal tolerance. (C) 2009 Published by Elsevier Inc.

Liu, Yan, Angelina S. Palma, Wengang Chai, Claudia Muhle-Goll, Yukishige Ito, and Ten Feizi. "The Latest on Malectin - A Lectin of the Endoplasmic Reticulum." Glycobiology. 19 (2009): 1301-1302. Abstract
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Godinho, M. H., D. Filip, I. Costa, A. - L. Carvalho, J. L. Figueirinhas, and E. M. Terentjev. "Liquid crystalline cellulose derivative elastomer films under uniaxial strain." Cellulose. 16 (2009): 199-205. Abstract
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Godinho, M. H., D. Filip, I. Costa, A. - L. Carvalho, J. L. Figueirinhas, and E. M. Terentjev. "Liquid crystalline cellulose derivative elastomer films under uniaxial strain." Cellulose. 16.2 (2009): 199-205. Abstract
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Rivas, M. G., M. S. P. Carepo, C. S. Mota, M. Korbas, M. C. Durand, A. T. Lopes, CD Brondino, AS Pereira, GN George, A. Dolla, JJG Moura, and I. Moura. "Molybdenum Induces the Expression of a Protein Containing a New Heterometallic Mo-Fe Cluster in Desulfovibrio alaskensis." Biochemistry. 48 (2009): 873-882. AbstractWebsite

The characterization of a novel Mo-Fe protein (MorP) associated with a system that responds to Mo in Desulfovibrio alaskensis is reported. Biochemical characterization shows that MorP is a periplasmic homomultimer of high molecular weight (260 +/- 13 kDa) consisting of 16-18 monomers of 15321.1 +/- 0.5 Da. The UV/visible absorption spectrum of the as-isolated protein shows absorption peaks around 280, 320, and 570 nm with extinction coefficients of 18700, 12800, and 5000 M(-1) cm(-1), respectively. Metal content, EXAFS data and DFT calculations support the presence of a Mo-2S-[2Fe-2S]-2S-Mo cluster never reported before. Analysis of the available genomes from Desulfovibrio species shows that the MorP encoding gene is located downstream of a sensor and a regulator gene. This type of gene arrangement, called two component system, is used by the cell to regulate diverse physiological processes in response to changes in environmemtal conditions. Increase of both gene expression and protein production was observed when cells were cultured in the presence of 45 mu M molybdenum. Involvement of this system in Mo tolerance of sulfate reducing bacteria is proposed.

Martins, R., Leandro Raniero, Luis Pereira, Daniel Costa†, Hugo Aguas, Sonia Pereira, Leonardo Silva, A. Gonçalves, I. Ferreira, and E. Fortunato. "Nanostructured silicon and its application to solar cells, position sensors and thin film transistors." Philosophical Magazine. 89.28-30 (2009): 2699-2721. Abstract
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Martins, R., Leandro Raniero, Luis Pereira, Daniel Costa, Hugo Aguas, Sonia Pereira, Leonardo Silva, A. Gonçalves, I. Ferreira, and E. Fortunato. "Nanostructured silicon and its application to solar cells, position sensors and thin film transistors." Philosophical Magazine. 89 (2009): 2699-2721. Abstract
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Mateus, O., SCR Maidment, and NA Christiansen. "A new long-necked {'}sauropod-mimic{'} stegosaur and the evolution of the plated dinosaurs." Proceedings of the Royal Society B: Biological Sciences. 276 (2009): 1815-1821. Abstract
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Capelo, J. L., R. Carreira, M. Diniz, L. Fernandes, M. Galesio, C. Lodeiro, H. M. Santos, and G. Vale. "Overview on modern approaches to speed up protein identification workflows relying on enzymatic cleavage and mass spectrometry-based techniques." Analytica Chimica Acta. 650 (2009): 151-159. AbstractWebsite
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Fortunato, E., Nuno Correia, Pedro Barquinha, Claudia Costa, Luis Pereira, Goncalo Goncalves, and Rodrigo Martins. "Paper Field Effect Transistor." Zinc Oxide Materials and Devices Iv. Eds. F. H. Teherani, C. W. Litton, and D. J. Rogers. Vol. 7217. Proceedings of SPIE, 7217. 2009. Abstract
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Chaves, M. M., J. Flexas, and C. Pinheiro. "Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell." Annals of Botany. 103 (2009): 551-560. AbstractWebsite

Plants are often subjected to periods of soil and atmospheric water deficits during their life cycle as well as, in many areas of the globe, to high soil salinity. Understanding how plants respond to drought, salt and co-occurring stresses can play a major role in stabilizing crop performance under drought and saline conditions and in the protection of natural vegetation. Photosynthesis, together with cell growth, is among the primary processes to be affected by water or salt stress. The effects of drought and salt stresses on photosynthesis are either direct (as the diffusion limitations through the stomata and the mesophyll and the alterations in photosynthetic metabolism) or secondary, such as the oxidative stress arising from the superimposition of multiple stresses. The carbon balance of a plant during a period of salt/water stress and recovery may depend as much on the velocity and degree of photosynthetic recovery, as it depends on the degree and velocity of photosynthesis decline during water depletion. Current knowledge about physiological limitations to photosynthetic recovery after different intensities of water and salt stress is still scarce. From the large amount of data available on transcript-profiling studies in plants subjected to drought and salt it is becoming apparent that plants perceive and respond to these stresses by quickly altering gene expression in parallel with physiological and biochemical alterations; this occurs even under mild to moderate stress conditions. From a recent comprehensive study that compared salt and drought stress it is apparent that both stresses led to down-regulation of some photosynthetic genes, with most of the changes being small (ratio threshold lower than 1) possibly reflecting the mild stress imposed. When compared with drought, salt stress affected more genes and more intensely, possibly reflecting the combined effects of dehydration and osmotic stress in salt-stressed plants.

Chaves, M. M., J. Flexas, and C. Pinheiro. "Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell." Annals of Botany. 103 (2009): 551-560. AbstractWebsite
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Freire, Filipe, Maria Joao Romao, Anjos L. Macedo, Susana S. Aveiro, Brian J. Goodfellow, and Ana Luisa Carvalho. "Preliminary structural characterization of human SOUL, a haem-binding protein." Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 65 (2009): 723-726. Abstract
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