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2008
Antonio, Carla, Carla Pinheiro, Maria Manuela Chaves, Candido Pinto Ricardo, Maria Fernanda Ortuno, and Jane Thomas-Oates. "Analysis of carbohydrates in Lupinus albus stems on imposition of water deficit, using porous graphitic carbon liquid chromatography-electrospray ionization mass spectrometry." Journal of Chromatography A. 1187 (2008): 111-118. AbstractWebsite
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Malan, AG, JP Meyer, PJ Coelho, and D. Aelenei. "Application of high-order spatial resolution schemes to the hybrid finite volume/finite element method for radiative transfer in participating media." International Journal of Numerical Methods for Heat & Fluid Flow. 18 (2008): 173-184. AbstractWebsite

Purpose ? This paper sets out to implement bounded high?order (HO) resolution schemes in a hybrid finite volume/finite element method for the solution of the radiative transfer equation. Design/methodology/approach ? The hybrid finite volume/finite element method had formerly been developed using the step scheme, which is only first?order accurate, for the spatial discretization. Here, several bounded HO resolution schemes, namely the MINMOD, CLAM, MUSCL and SMART schemes, formulated using the normalized variable diagram, were implemented using the deferred correction procedure. Findings ? The results obtained reveal an interaction between spatial and angular discretization errors, and show that the HO resolution schemes yield improved accuracy over the step scheme if the angular discretization error is small. Research limitations/implications ? Although the HO resolution schemes reduce the spatial discretization error, they do not influence the angular discretization error. Therefore, the global error is only reduced if the angular discretization error is also small. Practical implications ? The use of HO resolution schemes is only effective if the angular refinement yields low?angular discretization errors. Moreover, spatial and angular refinement should be carried out simultaneously. Originality/value ? The paper extends a methodology formerly developed in computational fluid dynamics, and aimed at the improvement of the solution accuracy, to the hybrid finite volume/finite element method for the solution of the radiative transfer equation.

Guerreiro, Bruno, Rita Cunha, and Carlos Silvestre Bergen Helicopter Nonlinear Model: Complete and Simplified Expressions. Instituto Superior Técnico, Institute for Systems and Robotics, 2008. Abstract
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Guerreiro, Bruno, Rita Cunha, and Carlos Silvestre Bergen Helicopter Nonlinear Model: Complete and Simplified Expressions. Instituto Superior Técnico, Institute for Systems and Robotics, 2008. Abstract
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Biscaia, H., M. G. Silva, and C. Chastre Caracterização Experimental e Modelação Numérica da Ligação GFRP/Betão. 7º Congresso de Mecânica Experimental. Vila Real: UTAD, 2008. Abstract
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Palma, L. B., P. S. Gil, F. V. Coito, and H. Duarte-Ramos. "Dealing with Complexity in Supervision Systems." (2008). Abstract
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Hayashi, S., K. Carpenter, M. Watabe, O. Mateus, and R. Barsbold. "Defensive weapons of thyreophoran dinosaurs: histological comparisons and structural differences in spikes and clubs of ankylosaurs and stegosaurs. 28 (3, Supplement), 89A-90A." Journal of Vertebrate Paleontology. 28 (2008): 89-90. Abstract
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Hayashi, S., K. Carpenter, M. Watabe, O. Mateus, and R. Barsbold. "Defensive weapons of thyreophoran dinosaurs: histological comparisons and structural differences in spikes and clubs of ankylosaurs and stegosaurs. 28 (3, Supplement), 89A-90A." Journal of Vertebrate Paleontology. 28 (2008): 89-90. Abstract
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Pinheiro, C., MHC de Carvalho, D. Bartels, CP Ricarddo, and M. M. Chaves. "Dehydrins in Lupinus albus: pattern of protein accumulation in response to drought." FUNCTIONAL PLANT BIOLOGY. 35 (2008): 85-91. Abstract
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Pinheiro, C., MHC de Carvalho, D. Bartels, CP Ricarddo, and M. M. Chaves. "Dehydrins in Lupinus albus: pattern of protein accumulation in response to drought." FUNCTIONAL PLANT BIOLOGY. 35 (2008): 85-91. Abstract
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Dias, Ricardo, João Louren{\c c}o, and Gon{\c c}alo Cunha. "Developing libraries using software transactional memory." Comput. Sci. Inf. Syst.. 5 (2008): 103-117. Abstract
Software transactional memory is a promising programming model that adapts many concepts borrowed from the databases world to control concurrent accesses to main memory (RAM). This paper discusses how to support revertible operations, such as memory allocation and release, within software libraries that will be used in software memory transactional contexts. The proposal is based in the extension of the transaction life cycle state diagram with new states associated to the execution of user-defined handlers. The proposed approach is evaluated in terms of functionality and performance by way of a use case study and performance tests. Results demonstrate that the proposal and its current implementation are flexible, generic and efficient
Dias, Ricardo, João Louren{\c c}o, and Gon{\c c}alo Cunha. "Developing Libraries Using Software Transactional Memory." CoRTA 2008: Proceedings of the Conference on Compilers, Related Technologies and Applications. Instituto Politécnico de Bragan{\c c}a - ESTG, 2008. Abstract
Software transactional memory (STM) is a promising programming model that adapts many concepts borrowed from the databases world to control concurrent accesses to main memory (RAM) locations. This paper aims at discussing how to support apparently irreversible operations within a memory transaction.
Monteiro, R. C. C., M. M. R. A. Lima, and C. S. Clemente. "Development of structural ceramics from fly ash and shale." Materials Science Forum. 587-588 (2008): 787-791. AbstractWebsite

The possibility of using fly ash and shale as alternative raw materials for the production of structural ceramics was investigated. Fly ash is a by-product from coal-burning power plants, and shale is a sedimentary rock that if ground finely enough can exhibit a clay-like plasticity. Ceramic samples containing 10-50 wt% fly ash were formed from mechanical mixing of both kinds of powders that were packed and sintered in the temperature range 950-1200°C It was verified that powders with larger fly ash content exhibited lower packing density resulting in compacts with a lower sintered density. Although an increase in fly ash content was associated to a larger presence of porosity in the sintered samples, as confirmed by microstructural analysis, all studied compositions when sintered at the highest temperatures exhibited satisfactory values for water absorption (< 10%), for flexural strength (20-64 MPa) and for hardness (20-30 GPa) indicating that they have potential to be applied in the production of structural ceramics.

Cardoso, D. M., J. Orestes Cerdeira, C. Delorme, and P. C. Silva. "Efficient edge domination in regular graphs." Discrete Applied Mathematics. 156 (2008): 3060-3065. Abstract
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Dell'acqua, S., S. R. Pauleta, E. Monzani, AS Pereira, L. Casella, JJG Moura, and I. Moura. "Electron transfer complex between nitrous oxide reductase and cytochrome c(552) from Pseudomonas nautica: Kinetic, nuclear magnetic resonance, and docking studies." Biochemistry. 47 (2008): 10852-10862. AbstractWebsite

The multicopper enzyme nitrous oxide reductase (N2OR) catalyzes the final step of denitrification, the two-electron reduction of N2O to N-2. This enzyme is a functional homodimer containing two different multicopper sites: CuA and CuZ. CuA is a binuclear copper site that transfers electrons to the tetranuclear copper sulfide CuZ, the catalytic site. In this study, Pseudomonas nautica cytochrome C-552 was identified as the physiological electron donor. The kinetic data show differences when physiological and artificial electron donors are compared [cytochrome vs methylviologen (MV)]. In the presence of cytochrome c(552), the reaction rate is dependent on the ET reaction and independent of the N2O concentration. With MV, electron donation is faster than substrate reduction. From the study of cytochrome c(552) concentration dependence, we estimate the following kinetic parameters: K-mc512 = 50.2 +/- 9.0 mu M and V-maxc551 1.8 +/- 10.6 units/mg. The N2O concentration dependence indicates a K-mN2O of 14.0 +/- 2.9 mu M using MV as the electron donor. The pH effect on the kinetic parameters is different when MV or cytochrome c(552) is used as the electron donor (pK(a) = 6.6 or 8.3, respectively). The kinetic study also revealed the hydrophobic nature of the interaction, and direct electron transfer studies showed that CuA is the center that receives electrons from the physiological electron donor. The formation of the electron transfer complex was observed by H-1 NMR protein-protein titrations and was modeled with a molecular docking program (BiGGER). The proposed docked complexes corroborated the ET studies giving a large number of solutions in which cytochrome c(552) is placed near a hydrophobic patch located around the CuA center.

Gomes, Catarina, Angelina S. Palma, Rui Almeida, Manuela Regalla, Leo F. McCluskey, John Q. Trojanowski, and Julia Costa. "Establishment of a cell model of ALS disease: Golgi apparatus disruption occurs independently from apoptosis." Biotechnology Letters. 30 (2008): 603-610. Abstract
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Palma, L., F. Coito, R. Neves-Silva, and P. Gil. "A Fault Tolerant Approach for Networked Control Systems Using Predictive Models." (2008). Abstract
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Canejo, Joao P., Joao P. Borges, Helena M. Godinho, Pedro Brogueira, Paulo IC Teixeira, and Eugene M. Terentjev. "Helical Twisting of Electrospun Liquid Crystalline Cellulose Micro‐and Nanofibers." Advanced Materials. 20.24 (2008): 4821-4825. Abstract
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Cruz, C., M. H. Godinho, AJ Ferreira, PS Kulkarni, CAM Afonso, and Paulo Ivo Cortez Teixeira. "How foam-like is the shear-induced lamellar phase of an ionic liquid crystal?" Philosophical Magazine Letters. 88.9-10 (2008): 741-747. Abstract
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Cui, H.-N.a, Teixeira Meng Martins Fortunato V. a L. -. "Influence of oxygen/argon pressure ratio on the morphology, optical and electrical properties of ITO thin films deposited at room temperature." Vacuum. 82 (2008): 1507-1511. AbstractWebsite

Transparent conductive oxides (TCOs) such as indium tin oxide (ITO) thin films onto glass substrates are widely used as transparent and conductive electrodes for a variety of technological applications including flat panel displays, solar cells, smart windows, touch screens, etc. ITO films on glass and polycarbonate (PC) substrates were prepared at room temperature (RT) and at different PO2. The films were characterized in terms of the surface roughness (δ), sheet resistance, the refractive index (n) and extinction coefficient (k). The free carrier density (nc) and the carrier mobility (μ) of the ITO (In2O3:Sn) films were measured and studied. The nc and μ values vary in different ratio of oxygen partial pressure (PO2) of ITO deposition. The observed changes in the ITO film resistivity are due to the combined effect of different parameter values for nc and μ. From AFM analysis and spectra calculations, the surface roughness values of the ITO films were studied and it was observed that the δ values were lower than 15 nm. The energy band gap Eg ranges from 3.26 eV to 3.66 eV as determined from the absorption spectrum. It was observed an increase on the energy band gap as the PO2 decrease in the range of 20-2% PO2. The Lorentz oscillator classical model has also been used to fit the ellipsometric spectra in order to obtain both refractive index n and extinction coefficient κ values. © 2008 Elsevier Ltd. All rights reserved.

Ortigueira, M., and F. Coito. "Initial Conditions: What Are We Talking About?" (2008). Abstract
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Gil, P., Alberto Cardoso, J. Nascimento, A. Medina, L. Palma, and P. Furtado. "Internet-Based Real-Time Control Laboratory." 8th Portuguese Conference on Automatic Control. n/a 2008. Abstract
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