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2017
Otero, V., J. V. V. Pinto, L. Carlyle, M. Vilarigues, M. Cotte, and M. J. J. Melo. "{Nineteenth century chrome yellow and chrome deep from Winsor & NewtonTM}." Studies in Conservation. 62 (2017): 123-149. AbstractWebsite

The Winsor & NewtonTM (W&N) nineteenth century archive database includes digitised images of hand- written instructions and workshop notes for the manufacture of their artists' materials. For the first time, all 183 production records for yellow lead chromate pigments were studied and evaluated. They revealed that W&N produced essentially three pigment types: lemon/pale based on mixed crystals of lead chromate and lead sulphate [Pb(Cr,S)O4]; middle on pure monoclinic lead chromate [PbCrO4]; and deep that contains the latter admixed with basic lead chromate [Pb2CrO5]; accounting for 53, 22, and 21% of the production, respectively. Production records for primrose (4%) were also included since the formulation results in mixed crystals with a high percentage of lead sulphate, which, according to the literature, leaves it more prone to degradation. Each pigment type is characterised by only one or two main synthetic pathways; process variations reveal a systematic and thorough search for a high-quality durable product. A comparison of the chemical composition of pigment reconstructions with early W&N oil paint tubes showed that their records entitled ‘pale' and ‘lemon' correlated with the pigment in their tube labelled chrome yellow and, ‘middle' and ‘deep' with the label chrome deep. Lemon and middle pigment formulations were made into oil paints to assess their relative photo-stability. The degradation process was followed by colorimetry and was studied by synchrotron radiation-based techniques. Based on the X-ray absorption spectroscopy data, the possibility for creating a stability index for chrome yellows is discussed. Keywords:

Salgado, M., S. Rodríguez-Rojo, R. L. Reis, M. J. Cocero, and A. R. C. Duarte. "{Preparation of barley and yeast $\beta$-glucan scaffolds by hydrogel foaming: Evaluation of dexamethasone release}." Journal of Supercritical Fluids (2017). Abstract

© 2017 Elsevier B.V. Porous polymeric materials are studied in tissue engineering, because they can act as support for cell proliferation and as drug delivery vehicles for regeneration of tissues. Hydrogel foaming with supercritical CO 2 is a suitable alternative for the creation of these structures, since it avoids the use of organic solvents and high temperature in the processing. In this work, $\beta$-glucans were used as raw materials to create hydrogels due to their easily gelation and biological properties. The enhancement of porosity was generated by a fast decompression after keeping the hydrogels in contact with CO 2 . The effect of the processing conditions and type of $\beta$-glucan in the final properties was assessed regarding morphological and mechanical properties. Finally, the ability of these materials to sustainably deliver dexamethasone was evaluated. The scaffolds had good morphology and provided a controlled release, thus being suitable to be used as scaffolds and drug delivery vehicles.

2016
Doutor, Paulo, Paula Rodrigues, Maria Ceu do Soares, and Fabio A. C. C. Chalub. "Optimal vaccination strategies and rational behaviour in seasonal epidemics." JOURNAL OF MATHEMATICAL BIOLOGY. 73 (2016): 1437-1465. Abstract

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Cardoso, Pedro, Pedro Amaro, Jose Paulo Santos, Joaquim T. de Assis, and Maria Luisa Carvalho. "Determination of Nickel and Manganese Contaminants in Pharmaceutical Iron Supplements using Energy Dispersive X-ray Fluorescence." Applied Spectroscopy (2016). AbstractWebsite

In this study, we investigate the capability of energy dispersive X-ray fluorescence (EDXF) spectrometry in a triaxial geometry apparatus as a fast and nondestructive determination method of both dominant and contaminant elements in pharmaceutical iron supplements. The following iron supplements brands with their respective active ingredients were analyzed: Neutrofer fólico (iron gylcinate), Anemifer (iron(II) sulfate monohydrate), Noripurum (iron(III)-hydroxide polymaltose complex), Sulferbel (iron(II) sulfate monohydrate), and Combiron Fólico (carbonyl iron). Although we observe a good agreement between the iron content obtained by the present method and that indicated in the supplement's prescribed dose, we observe contamination by manganese and nickel of up to 180 μg and 36 μg, respectively. These contents correspond to 7.2% and 14.4% of the permitted daily exposure of manganese and nickel, respectively, for an average adult individual as determined by the European Medicine Agency (EMEA). The method was successfully validated against the concentrations of several certified reference materials of biological light matrices with similar concentrations of contaminants. Moreover, we also validated our method by comparing the concentrations with those obtained with the inductively coupled plasma-atomic emission technique.

Pohl, R., and CREMA Collaboration. "Laser Spectroscopy of Muonic Atoms and Ions." JPS Conf. Proc. (2016): 1-12. AbstractWebsite
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Almeida, Bernardo F., Isabel Correia, and Francisco Saldanha-da-Gama. "Priority-based heuristics for the multi-skill resource constrained project scheduling problem." Expert Systems with Applications. 57 (2016): 91-103. AbstractWebsite
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Branquinho, Rita, Ana Santa, Emanuel Carlos, Daniela Salgueiro, Pedro Barquinha, Rodrigo Martins, and Elvira Fortunato. "{Solution Combustion Synthesis: Applications in Oxide Electronics}." Developments in Combustion Technology. Eds. Kyprianidis G. Konstantinos, and Jan Skvaril. InTech, 2016. 397-417. Abstract

Oxide-based electronics have been well established as an alternative to silicon technology; however, typical processing requires complex, high-vacuum equipment, which is a major drawback, particularly when targeting low-cost applications. The possibility to deposit the materials by low-cost techniques such as inkjet printing has drawn tremendous interest in solution processible materials for electronic applications; however, high processing temperatures still required. To overcome this issue, solution combustion synthesis has been recently pursued. Taking advantage of the exothermic nature of the reaction as a source of energy for localized heating, the precursor solutions can be converted into oxides at lower process temperatures. Theoretically, this can be applied to any metal ions to produce the desired oxide, opening unlimited possibilities to materials' composition and combinations. Solution combustion synthesis has been applied for the production of semiconductor thin films based on ZnO, In2O3, SnO2 and combinations of these oxides, and also for high $ąppa$ dielectrics (Al2O3). All of which are required for numerous electronic devices and applications such as fully oxide-based thin-film transistors (TFTs). The properties of produced thin films are highly dependent on the precursor solution characteristics; hence, the influence of several processing parameters; organic fuel, solvent and annealing temperature was studied. Although precursor solution degradation/oxide formation mechanisms are not yet fully understood, particularly for thin films, we demonstrate that high-performance devices are obtained with combustion solution-based metal oxide thin films. The results clearly show that solution combustion synthesis is becoming one of the most promising methods for low-temperature flexible electronics.

Lorenz, M., et al. "{The 2016 oxide electronic materials and oxide interfaces roadmap}." Journal of Physics D: Applied Physics. 49 (2016): 433001. AbstractWebsite

Oxide electronic materials provide a plethora of possible applications and offer ample opportunity for scientists to probe into some of the exciting and intriguing phenomena exhibited by oxide systems and oxide interfaces. In addition to the already diverse spectrum of properties, the nanoscale form of oxides provides a new dimension of hitherto unknown phenomena due to the increased surface-to-volume ratio. Oxide electronic materials are becoming increasingly important in a wide range of applications including transparent electronics, optoelectronics, magnetoelectronics, photonics, spintronics, thermoelectrics, piezoelectrics, power harvesting, hydrogen storage and environmental waste management. Synthesis and fabrication of these materials, as well as processing into particular device structures to suit a specific application is still a challenge. Further, characterization of these materials to understand the tunability of their properties and the novel properties that evolve due to their nanostructured nature is another facet of the challenge. The research related to the oxide electronic field is at an impressionable stage, and this has motivated us to contribute with a roadmap on 'oxide electronic materials and oxide interfaces'. This roadmap envisages the potential applications of oxide materials in cutting edge technologies and focuses on the necessary advances required to implement these materials, including both conventional and novel techniques for the synthesis, characterization, processing and fabrication of nanostructured oxides and oxide-based devices. The contents of this roadmap will highlight the functional and correlated properties of oxides in bulk, nano, thin film, multilayer and heterostructure forms, as well as the theoretical considerations behind both present and future applications in many technologically important areas as pointed out by Venkatesan. The contributions in this roadmap span several thematic groups which are represented by the following authors: novel field effect transistors and bipolar devices by Fortunato, Grundmann, Boschker, Rao, and Rogers; energy conversion and saving by Zaban, Weidenkaff, and Murakami; new opportunities of photonics by Fompeyrine, and Zuniga-Perez; multiferroic materials including novel phenomena by Ramesh, Spaldin, Mertig, Lorenz, Srinivasan, and Prellier; and concepts for topological oxide electronics by Kawasaki, Pentcheva, and Gegenwart. Finally, Miletto Granozio presents the European action 'towards oxide-based electronics' which develops an oxide electronics roadmap with emphasis on future nonvolatile memories and the required technologies. In summary, we do hope that this oxide roadmap appears as an interesting up-to-date snapshot on one of the most exciting and active areas of solid state physics, materials science, and chemistry, which even after many years of very successful development shows in short intervals novel insights and achievements.

Carlos, Emanuel, Rita Branquinho, Asal Kiazadeh, Pedro Barquinha, Rodrigo Martins, and Elvira Fortunato. "{UV-Mediated Photochemical Treatment for Low-Temperature Oxide-Based Thin-Film Transistors}." ACS Applied Materials {&} Interfaces. 8 (2016): 31100-31108. AbstractWebsite

Solution processing of amorphous metal oxides has lately been used as an option to implement in flexible electronics, allowing a reduction of the associated costs and high performance. However, the research has focused more on the semiconductor layer rather than on the insulator layer, which is related to the stability and performance of the devices. This work aims to evaluate amorphous aluminum oxide thin films produced by combustion synthesis and the influence of far-ultraviolet (FUV) irradiation on the properties of the insulator on thin-film transistors (TFTs) using different semiconductors, in order to have compatibility with flexible substrates. An optimized dielectric layer was obtained for an annealing of 30 min assisted by FUV exposure. These thin films were applied in gallium–indium–zinc oxide TFTs as dielectrics showing the best results for TFTs annealed at 180 °C with FUV irradiation: good reproducibility with a subthreshold slope of 0.11 ± 0.01 V dec –1 and a turn-on voltage of −0.12 ± 0.05 V...

Carepo, M. S., C. Carreira, R. Grazina, M. E. Zakrzewska, A. Dolla, C. Aubert, S. R. Pauleta, J. J. Moura, and I. Moura. "Orange protein from Desulfovibrio alaskensis G20: insights into the Mo-Cu cluster protein-assisted synthesis." J Biol Inorg Chem. 21 (2016): 53-62. AbstractWebsite

A novel metalloprotein containing a unique [S2MoS2CuS2MoS2](3-) cluster, designated as Orange Protein (ORP), was isolated for the first time from Desulfovibrio gigas, a sulphate reducer. The orp operon is conserved in almost all sequenced Desulfovibrio genomes and in other anaerobic bacteria, however, so far D. gigas ORP had been the only ORP characterized in the literature. In this work, the purification of another ORP isolated form Desulfovibrio alaskensis G20 is reported. The native protein is monomeric (12443.8 +/- 0.1 Da by ESI-MS) and contains also a MoCu cluster with characteristic absorption bands at 337 and 480 nm, assigned to S-Mo charge transfer bands. Desulfovibrio alaskensis G20 recombinant protein was obtained in the apo-form from E. coli. Cluster reconstitution studies and UV-visible titrations with tetrathiomolybdate of the apo-ORP incubated with Cu ions indicate that the cluster is incorporated in a protein metal-assisted synthetic mode and the protein favors the 2Mo:1Cu stoichiometry. In Desulfovibrio alaskensis G20, the orp genes are encoded by a polycistronic unit composed of six genes whereas in Desulfovibrio vulgaris Hildenborough the same genes are organized into two divergent operons, although the composition in genes is similar. The gene expression of ORP (Dde_3198) increased 6.6 +/- 0.5 times when molybdate was added to the growth medium but was not affected by Cu(II) addition, suggesting an involvement in molybdenum metabolism directly or indirectly in these anaerobic bacteria.

Ramos, I., I. M. Pataco, M. P. Mourinho, F. Lidon, F. Reboredo, M. F. Pessoa, M. L. Carvalho, J. P. Santos, and M. Guerra. "Elemental mapping of biofortified wheat grains using micro X-ray fluorescence." Spectrochimica Acta Part B: Atomic Spectroscopy. 120 (2016): 30-36. AbstractWebsite

Spectrochimica Acta Part B: Atomic Spectroscopy, 120 (2016) 30-36. doi:10.1016/j.sab.2016.03.014

Röder, Marko, et al. "{Coulomb dissociation of $^{20,21}$N}." Physical Review C. 93 (2016): 065807. AbstractWebsite
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Panigrahi, Shrabani, Tomas Calmeiro, Rodrigo Martins, Daniela Nunes, and Elvira Fortunato. "{Observation of Space Charge Dynamics Inside an All Oxide Based Solar Cell}." ACS NANO. 10 (2016): 6139-6146. Abstract
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Faustino, Pedro, Pedro Frade, and Carlos Chastre. "Lateral cyclic behaviour of RC columns confined with carbon fibres." Structures. 5 (2016): 196-206. AbstractWebsite

Reinforced concrete (RC) columns with various strengthening systems and different conditions were tested to cyclic lateral and axial loading for the purpose of performance assessment. Tests included confinement strengthening with carbon-fiber-reinforced polymer (CFRP) sheets, longitudinal strengthening with CFRP laminates and confining CFRP jacket, longitudinal strengthening with stainless steel bars and confining CFRP jacket, tested column until reinforcing steel failure, repair and CFRP confining jacket, and longitudinal strengthening with stainless steel bars. The analysis of the tests results as to load-displacement relationship and energy dissipation led to the conclusion that the use of external longitudinal strengthening with CFRP confinement is effective for performance retrofitting and upgrading, and viable in terms of execution. The load capacity increase due to strengthening reached 36–46% with good ductile behaviour. Nonlinear numerical modelling was carried out using two approaches which represent reasonably well the global performance of the studied columns for the prediction of the ascending load-displacement relationship and the peak load values in each cycle.

Nobrega, C. S., I. H. Saraiva, C. Carreira, B. Devreese, M. Matzapetakis, and S. R. Pauleta. "The solution structure of the soluble form of the lipid-modified azurin from Neisseria gonorrhoeae, the electron donor of cytochrome c peroxidase." Biochim Biophys Acta. 1857 (2016): 169-76. AbstractWebsite

Neisseria gonorrhoeae colonizes the genitourinary track, and in these environments, especially in the female host, the bacteria are subjected to low levels of oxygen, and reactive oxygen and nitrosyl species. Here, the biochemical characterization of N. gonorrhoeae Laz is presented, as well as, the solution structure of its soluble domain determined by NMR. N. gonorrhoeae Laz is a type 1 copper protein of the azurin-family based on its spectroscopic properties and structure, with a redox potential of 277+/-5 mV, at pH7.0, that behaves as a monomer in solution. The globular Laz soluble domain adopts the Greek-key motif, with the copper center located at one end of the beta-barrel coordinated by Gly48, His49, Cys113, His118 and Met122, in a distorted trigonal geometry. The edge of the His118 imidazole ring is water exposed, in a surface that is proposed to be involved in the interaction with its redox partners. The heterologously expressed Laz was shown to be a competent electron donor to N. gonorrhoeae cytochrome c peroxidase. This is an evidence for its involvement in the mechanism of protection against hydrogen peroxide generated by neighboring lactobacilli in the host environment.

Brás, Joana L. A., Benedita A. Pinheiro, Kate Cameron, Fiona Cuskin, Aldino Viegas, Shabir Najmudin, Pedro Bule, Virginia M. R. Pires, Maria João Romão, Edward A. Bayer, Holly L. Spencer, Steven Smith, Harry J. Gilbert, Victor D. Alves, Ana Luísa Carvalho, and Carlos M. G. A. Fontes. "Diverse specificity of cellulosome attachment to the bacterial cell surface." Scientific Reports. 6 (2016): 38292. AbstractWebsite

During the course of evolution, the cellulosome, one of Nature's most intricate multi-enzyme complexes, has been continuously fine-tuned to efficiently deconstruct recalcitrant carbohydrates. To facilitate the uptake of released sugars, anaerobic bacteria use highly ordered protein-protein interactions to recruit these nanomachines to the cell surface. Dockerin modules located within a non-catalytic macromolecular scaffold, whose primary role is to assemble cellulosomal enzymatic subunits, bind cohesin modules of cell envelope proteins, thereby anchoring the cellulosome onto the bacterial cell. Here we have elucidated the unique molecular mechanisms used by anaerobic bacteria for cellulosome cellular attachment. The structure and biochemical analysis of five cohesin-dockerin complexes revealed that cell surface dockerins contain two cohesin-binding interfaces, which can present different or identical specificities. In contrast to the current static model, we propose that dockerins utilize multivalent modes of cohesin recognition to recruit cellulosomes to the cell surface, a mechanism that maximises substrate access while facilitating complex assembly.

Correia, Isabel, and Teresa Melo. "Multi-period capacitated facility location under delayed demand satisfaction." European Journal of Operational Research. 255 (2016): 729-746. AbstractWebsite
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Guerra, M., C. Ferreira, M. L. Carvalho, J. P. Santos, and S. Pessanha. "Distribution of toxic elements in teeth treated with amalgam using μ-energy dispersive X-ray fluorescence." Spectrochimica Acta Part B: Atomic Spectroscopy. 122 (2016): 114-117. AbstractWebsite

Spectrochimica Acta Part B: Atomic Spectroscopy, 122 (2016) 114-117. doi:10.1016/j.sab.2016.06.006

Guimarães, D., A. A. Dias, M. Carvalho, M. L. Carvalho, J. P. Santos, F. R. Henriques, F. Curate, and S. Pessanha. "Quantitative determinations and imaging in different structures of buried human bones from the XVIII-XIXth centuries by energy dispersive X-ray fluorescence – Postmortem evaluation." Talanta. 155 (2016): 107-115. AbstractWebsite

Talanta, 155 + (2016) 107-115. doi:10.1016/j.talanta.2016.04.028

Cabanelas, P., J. Cruz, M. Fonseca, A. Henriques, F. Louren{\c c}o, H. Lu{\'ıs, J. Machado, Pires J. Ribeiro, A. M. Sánchez-Ben{\'ıtez, P. Teubig, P. Velho, M. Zarza-Moreno, D. Galaviz, and A. P. Jesus. "{Cross sections for proton induced high energy $\gamma$-ray emission (PIGE) in reaction F(p,$\gamma$)O at incident proton energies between 1.5 and 4 MeV}." Nuclear Inst. and Methods in Physics Research, B. 381 (2016): 110-113. AbstractWebsite
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Lopes, A., A. Gabriel, J. Machado, P. Ribeiro, R. Gomes, Jo M. P. o Coelho, C. O. Silva, C. P. Reis, J. P. Santos, and P. Vieira. "Multiple Source Phototherapy in Breast Cancer: A Viability Study." 9th International Conference on Biomedical Electronics and Devices. SCITEPRESS - Science and and Technology Publications, 2016. 247-250. Abstract
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Neca, A. J., R. Soares, M. S. Carepo, and S. R. Pauleta. "Resonance assignment of DVU2108 that is part of the Orange Protein complex in Desulfovibrio vulgaris Hildenborough." Biomol NMR Assign. 10 (2016): 117-20. AbstractWebsite

We report the 94 % assignment of DVU2108, a protein belonging to the Orange Protein family, that in Desulfovibrio vulgaris Hildenborough forms a protein complex named the Orange Protein complex. This complex has been shown to be implicated in the cell division of this organism. DVU2108 is a conserved protein in anaerobic microorganisms and in Desulfovibrio gigas the homologous protein was isolated with a novel Mo-Cu cluster non-covalently attached to the polypeptide chain. However, the heterologously produced DVU2108 did not contain any bound metal. These assignments provide the means to characterize the interaction of DVU2108 with the proteins that form the Orange Protein complex using NMR methods.

Silva, Teresa, Francisco Costa, Judite Fernandes, Rogério Calvo, and Octávio Mateus The use of a portable X-ray fluorescence analyzer in the reconstitution of dinosaur fossils. European Conference on X-Ray Spectrometry (EXRS), 2016. Abstract

Portable X-ray fluorescence spectrometers (p-XRF) have been used in many fields of application/studies like art, archaeology, heavy metals in soil, rocks and ores characterization, and have been a powerful tool for a rapid non-destructive in-situ analysis, without any sample preparation required. This approach was applied in the present case, to distinguish the origin of the fossil bones of two dinosaur specimens from different localities that were accidentally put together in the museum a few years ago. Fossil bones with sedimentary matrix associated were stored together until today in the collection of Geological Museum (Lisbon) and regarded as one single specimen. One set of bones is part of the holotype MG 5787 of the ankylosaur Dracopelta zbyszweskii, which was discovered at Praia do Sul, and described in 1980, while the other, is an undescribed half skeleton of dacentrurine stegosaur, unearthed in the 1960’s at Atouguia da Baleia, near Peniche (both in the coast of central Portugal, distanced about 100 km from each other). Since both specimens are highly valuable for paleontology, a study was developed with the aim of separating and reconstituting the two specimens. The handheld p-XRF (Genius 9000+7000 from Skyray Instrument) was directly used in the sedimentary matrix when it was separated from the bone, and the measure of the chemical content was performed in the intermediate layer between the surface and the bone, to avoid contaminations. Although the light elements could not be attained, because the analyzer is not equipped with the option of gas charging system, the spectra obtained showed differences mainly in the ratio K/Ca, allowing distinguishing the provenance of the bones (Atouguia or Praia do Sul). These results were compared with chemical analysis obtained with XRF laboratorial equipment and complemented by the mineralogical study through X-ray diffraction (XRD) of the sediments where the bones fossilized. The difference observed in the mineralogical constitution of the sedimentary matrix from the two localities (mainly quartz, calcite, feldspars and micas with variable content) explains the variation in the values found for the ratio K/Ca (<0.5 for Atouguia and >>1 for Praia do Sul). The data obtained will be presented and discussed focusing on the importance of using a portable X-ray fluorescence analyzer applied to the reconstitution of dinosaur fossils that proved to be very useful in the present case.

Biscaia, Hugo C., David Cruz, and Carlos Chastre. "Analysis of the debonding process of CFRP-to-timber interfaces." Construction and Building Materials. 113 (2016): 96-112. AbstractWebsite

The use of Fiber Reinforced Polymers (FRP) in the strengthening of timber structures is quite recent and few studies have discussed the debonding between these materials. The analysis of the Mode II debonding process between FRP composites and timber elements may be of great importance because this mode is predominant in the case, for instance, of the bending of beams. Knowing the appropriate bond-slip model to use on the estimation of the performance of FRP-to-timber interfaces is greatly relevant. Under such circumstances, a detailed knowledge of all the states that CFRP-to-timber interfaces are subjected to is important as well. The current work gives answers to these aspects proposing an analytical solution based on a tri-linear bond-slip model that is capable of describing precisely the full-range debonding behavior of FRP-to-timber interfaces. Thus, the purpose of this study is to contribute to existing knowledge with an analytical solution capable of describing the full-range debonding process between a FRP composite and a substrate. The analytical solutions herein proposed are also compared with the results obtained from several experiments based on single-lap shear tests. Comparisons at different load levels and different bonded lengths are presented. The slips, strains in the CFRP composite and bond stress distributions within the bonded interface are emphasized in the text. The complete load-slip response of CFRP-to-timber interface is also analyzed. Each state of the debonding process is described and each one is identified in the load-slip curve.