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1996
Coelho, A., P. Matias, M. Carrondo, P. Tavares, J. Moura, I. Moura, V. Fulop, J. Hajdu, and J. LeGall. "{Preliminary crystallographic analysis of the oxidized form of a two mono-nuclear iron centres protein from Desulfovibrio desulfuricans ATCC 27774}." Protein science : a publication of the Protein Society. 5 (1996): 1189-1191. Abstract
{Crystals of the fully oxidized form of desulfoferrodoxin were obtained by vapor diffusion from a solution containing 20% PEG 4000, 0.1 M HEPES buffer, pH 7.5, and 0.2 M CaCl2. Trigonal and/or rectangular prisms could be obtained, depending on the temperature used for the crystal growth. Trigonal prisms belong to the rhombohedral space group R32, with a = 112.5 A and c = 63.2 A; rectangular prisms belong to the monoclinic space group C2, with a = 77.7 A
Kwiatkowski, Jan, Marek Andruszkiewicz, Emilio Luque, Tomas Margalef, José C. Cunha, João Louren{\c c}o, Henryk Krawczyk, and Stanislaw Szejko. "Teaching parallel processing: development of curriculum and software tools." SIGCUE Outlook. 24 (1996): 159-161.Website
Pereira, AS, R. Franco, MJ Feio, C. Pinto, J. Lampreia, MA Reis, J. Calvete, I. Moura, I. Beech, AR Lino, and JJG Moura. "Characterization of representative enzymes from a sulfate reducing bacterium implicated in the corrosion of steel." BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 221 (1996): 414-421. Abstract
This communication reports the isolation, purification and characterization of key enzymes involved in dissimilatory sulfate reduction of a sulfate reducing bacterium classified as Desulfovibrio desulfuricans subspecies desulfuricans New Jersey (NCIMB 8313) (Ddd NJ). The chosen strain, originally recovered from a corroding cast iron heat exchanger, was grown in large scale batch cultures. Physico-chemical and spectroscopic studies of the purified enzymes were carried out. These analyses revealed a high degree of similarity between proteins isolated from the DddNJ strain and the homologous proteins obtained from Desulfomicrobium baculatus Norway 4. In view of the results obtained, taxonomic reclassification of Desulfovibrio desulfuricans subspecies desulfuricans New Jersey (NCIMB 8313) into Desulfomicrobium baculatus (New Jersey) is proposed. (C) 1996 Academic Press, Inc.
Cardoso, R. M. R. "Auditory application on a regressional model for premium calculation." Boletim do Instituto dos Actuários Portugueses. 36 (1996): 22-25.
Cunha, José C., João M. Lourenço, and Tiago Antão. "A Debugging Engine for a Parallel and Distributed Environment." Proceedings of the 1st Austrian-Hungarian Workshop on Distributed and Parallel Systems (DAPSYS'96). Wien, Austria: Hungarian Academy of Sciences, KFKI, 1996. 111-118. Abstractdapsys96.pdf

This paper describes a debugging interface that has been developed for a parallel software engineering environment and that was developed on top of the PVM environment in the scope of the SEPP and HPCTI projects of the COPERNICUS Program. The main goal of this interface is to provide the basic debugging functionalities that are required by some components of that environment. We give special attention to the requirements posed by high-level tools of the environment, and to the need of providing a flexible debugging support layer that can be suitably adapted and extended. We present the system logical architecture and the interface specification of the debugging engine. We discuss its interfacing with other components of the environment, namely a graphical editor for the GRAPNEL visual parallel programming language, and a testing tool. We finally describe current work on the improvement of the debugging engine. Keywords: Debugging, monitoring, parallel processing, software tools.

Kwiatkowski, Jan, Marek Andruszkiewicz, Emilio Luque, Tomas Margalef, José C. Cunha, João M. Lourenço, Henryk Krawczyk, and Stanislaw Szejko. "Teaching parallel processing: development of curriculum and software tools." SIGCUE Outlook. 24 (1996): 159-161. Abstractsigcse96.pdfWebsite

This paper presents an approach to education in Parallel and Distributed Processing undertaken in the Technical University of Gdansk and Technical University of Wroclaw. The paper gives a detailed structure of the project entitled "Teaching Parallel Processing: Development of Curriculum and Software Tools" which was started in 1994 and will be finish in 1997. Two universities from Poland: Technical University of Gdansk and Technical University of Wroclaw and two universities from EC countries: University Autònoma of Barcelona from Spain and University Nova of Lisbon from Portugal participate in the presented project. The main aim of the project is to develop existing curricula of Computer Science specialisation and to establish specialisation concerned with parallel and distributed processing at Polish universities.

Pereira, AS, R. Franco, MJ Feio, C. Pinto, J. Lampreia, MA Reis, J. Calvete, I. Moura, I. Beech, AR Lino, and JJG Moura. "Characterization of representative enzymes from a sulfate reducing bacterium implicated in the corrosion of steel." Biochemical and Biophysical Research Communications. 221 (1996): 414-421. AbstractWebsite

This communication reports the isolation, purification and characterization of key enzymes involved in dissimilatory sulfate reduction of a sulfate reducing bacterium classified as Desulfovibrio desulfuricans subspecies desulfuricans New Jersey (NCIMB 8313) (Ddd NJ). The chosen strain, originally recovered from a corroding cast iron heat exchanger, was grown in large scale batch cultures. Physico-chemical and spectroscopic studies of the purified enzymes were carried out. These analyses revealed a high degree of similarity between proteins isolated from the DddNJ strain and the homologous proteins obtained from Desulfomicrobium baculatus Norway 4. In view of the results obtained, taxonomic reclassification of Desulfovibrio desulfuricans subspecies desulfuricans New Jersey (NCIMB 8313) into Desulfomicrobium baculatus (New Jersey) is proposed. (C) 1996 Academic Press, Inc.

Cunha, José C., João Louren{\c c}o, and Tiago Antão. "A Debugging Engine for a Parallel and Distributed Environment." Proceedings of the 1st Austrian-Hungarian Workshop on Distributed and Parallel Systems (DAPSYS’96). Hungarian Academy of Sciences, KFKI, 1996. 111-118. Abstract
This paper describes a debugging interface that has been developed for a parallel software engineering environment and that was developed on top of the PVM environment in the scope of the SEPP and HPCTI projects of the COPERNICUS Program. The main goal of this interface is to provide the basic debugging functionalities that are required by some components of that environment. We give special attention to the requirements posed by high-level tools of the environment, and to the need of providing a flexible debugging support layer that can be suitably adapted and extended. We present the system logical architecture and the interface specification of the debugging engine. We discuss its interfacing with other components of the environment, namely a graphical editor for the GRAPNEL visual parallel programming language, and a testing tool. We finally describe current work on the improvement of the debugging engine. Keywords: Debugging, monitoring, parallel processing, software tools.
Cunha, José C., João Louren{\c c}o, and Tiago Antão. "A Distributed Debugging Tool for a Parallel Software Engineering Environment." Proceedings of the 1st European Parallel Tools Meeting (EPTM’96). ONERA (French National Establishment for Aerospace Research), 1996. Abstract
We discuss issues in the design and implementation of a flexible debugging tool and its integration into a parallel software engineering environment.
Carvalho, C., JMM De Nijs, I. Ferreira, E. Fortunato, and R. Martins. "Improvement of the ITO-p Interface In a-SI: H Solar Cells Using a Thin SiO Intermediate Layer." MRS Proceedings. 426.1 (1996). Abstract
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dede Carvalho, C.Nunes, Nijs Ferreira Fortunato Martins J. M. M. I. "Improvement of the ITO-P interface in a-Si:H solar cells using a thin SiO intermediate layer." Materials Research Society Symposium - Proceedings. Vol. 426. 1996. 25-29. Abstract

The use of ITO films on glass/ITO/p-i-n/metal amorphous silicon solar cells is reviewed. It is suggested a new application for silicon monoxide thin films on the ITO-p interface, as an intermediate layer, to minimize the ITO thin film deterioration process, during the early stage of exposure to a silane plasma rich in hydrogen. The thickness of the silicon monoxide thin films is chosen not to worsen the optical and electrical properties of the ITO thin films. The ITO-p interface is optimized (due to impurities diffusion decrease), leading to an overall improvement of the device performance.

Lemos, J. M., F. Coito, P. Shirley, P. Conceição, F. Garcia, C. Silvestre, and J. Sentieiro. "Long-range adaptive control algorithms for robotics applications." Progress in robotics and intelligent systems. 2 (1996): 134. Abstract
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Baas, S. M., and J. O. Cerdeira. "Minimum cost K-forest covers." Mathematical Methods of Operations Research. 44 (1996): 255-265. Abstract
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Baas, Sjoerd M., and Jorge Orestes Cerdeira. "Minimum cost K-forest covers." ZOR. Zeitschrift fur Operations-Research. 44 (1996): 255-265. Abstract
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Cerdeira, J. O., R. Cordovil, and T. V. Heitor. "On the characterization of axial maps." Environment and Planning B: Planning and Design. 23 (1996): 771-780. Abstract
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Cerdeira, J. O., and P. Barcia. "Ordered matroids and regular independence systems." Discrete Mathematics. 154 (1996): 255-261. Abstract
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Courteille, C.a, Hollenstein Ch.a Dorier Gay Schwarzenbach Howling Bertran Viera Martins Macarico J. - L. a. "Particle agglomeration study in in silane plasmas: In situ study by polarization-sensitive laser light scattering." Journal of Applied Physics. 80 (1996): 2069-2078. AbstractWebsite

To determine self-consistently the time evolution of particle size and their number density in situ multi-angle polarization-sensitive laser light scattering was used. Cross-polarization intensities (incident and scattered light intensities with opposite polarization) measured at 135° and ex situ transmission electronic microscopy analysis demonstrate the existence of nonspherical agglomerates during the early phase of agglomeration. Later in the particle time development both techniques reveal spherical particles again. The presence of strong cross-polarization intensities is accompanied by low-frequency instabilities detected on the scattered light intensities and plasma emission. It is found that the particle radius and particle number density during the agglomeration phase can be well described by the Brownian free molecule coagulation model. Application of this neutral particle coagulation model is justified by calculation of the particle charge whereby it is shown that particles of a few tens of nanometer can be considered as neutral under our experimental conditions. The measured particle dispersion can be well described by a Brownian free molecule coagulation model including a log-normal particle size distribution. © 1996 American Institute of Physics.

1995
Cidade, M. T., C. R. Leal, M. H. Godinho, AF Martins, and P. Navard. "Rheological properties of acetoxypropylcellulose in the thermotropic chiral nematic phase." 261.1 (1995): 617-625. Abstract
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Guerrero, C., J. Carrasco de Brito, N. Lapa, and J. F. Santos Oliveira. "Re-use of industrial orange wastes as organic fertilizers." Bioresource Technology. 53.1 (1995): 43-51. AbstractWebsite

The aim of this study was to evaluate the possibility of the re-use of industrial orange wastes as organic soil fertilizer. The assay was performed with a lettuce variety widely produced and consumed in Portugal and, consequently, with great commercial interest. Lactuca sativa L. (osteolata variety) was cultivated in Mitcherlich pots containing samples of a poor soil of the Algarve region. This soil was prepared with different amounts of either pulp or peel orange-wastes from an orange-juice industry. The wastes were applied according to an increasing amount of nitrogen. The results obtained were submitted to statistical tests, in order to find the relations between the production of fresh and dry matter, and the percentages of nutrients (nitrogen, phosphorous, potassium, calcium, magnesium and iron) that were obtained in the dry matter, with the types and amounts of wastes applied. An increase in the average production of both fresh- and dry-matter with increasing amounts of either pulp or peel wastes applied, and high positive correlation coefficients between the average percentages of nitrogen, phosphorus and potassium obtained in the dry matter with the average production of both fresh- and dry-matter were found. No phytotoxicity was observed.

Cerdeira, J. O., I. Faria, and P. Bárcia. "Establishing determinantal inequalities for positive-definite matrices." Discrete Applied Mathematics. 63 (1995): 13-24. Abstract
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Carvalho, J., Ferreira Fernandes Fidalgo Martins I. B. J. "Nd-YAG laser induced crystallization on a-Si:H thin films." Materials Research Society Symposium - Proceedings. Vol. 358. 1995. 915-920. Abstract

In this paper we present results concerning the influence of laser energy and shot density on the electrical resistance, X-ray diffraction pattern, and structure obtained by SEM, on recrystallized a-Si:H thin films produced by using a Nd-YAG laser, working in a wavelength of 532 nm. The base material (undoped and doped a-Si:H) was obtained by Plasma Enhanced Chemical Vapour Deposition (PECVD). The structure and electrical characteristics of the recrystallized thin films are dependent on the laser beam energy density, beam spot size and the number of shots applied to the base a-Si:H thin film used. Overall, the data show recrystallized material with grain sizes larger than 1μm, where the electrical resistance of both, undoped and doped materials, can be varied up to 5 orders of magnitude, by the proper choice of the recrystallization conditions.

Cidade, M. T., C. R. Leal, M. H. Godinho, AF Martins, and P. Navard. "Rheological properties of acetoxypropylcellulose in the thermotropic chiral nematic phase." Molecular Crystals and Liquid Crystals. 261.1 (1995): 617-625. Abstract
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Cerdeira, Jorge Orestes. "When is a 0-1 knapsack a matroid ?" Portugaliae Mathematica 52 (1995) 475–480 (1995). Abstract
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1994
CALDEIRA, J., PN PALMA, M. REGALLA, J. Lampreia, J. Calvete, W. SCHAFER, J. LeGall, I. Moura, and JJG Moura. "PRIMARY SEQUENCE, OXIDATION-REDUCTION POTENTIALS AND TERTIARY-STRUCTURE PREDICTION OF DESULFOVIBRIO-DESULFURICANS ATCC-27774 FLAVODOXIN." EUROPEAN JOURNAL OF BIOCHEMISTRY. 220 (1994): 987-995. Abstract
Flavodoxin was isolated and purified from Desulfovibrio desulfuricans ATCC 27774, a sulfatereducing organism that can also utilize nitrate as an alternative electron acceptor. Mid-point oxidation-reduction potentials of this flavodoxin were determined by ultraviolet/visible and EPR methods coupled to potentiometric measurements and their pH dependence studied in detail. The redox potential E(2), for the couple oxidized/semiquinone forms at pH 6.7 and 25 degrees C is -40 mV, while the value for the semiquinone/hydroquinone forms (E(1)), at the same pH, -387 mV. E(2) varies linearly with pH, while E(1) is independent of pH at high values. However, at low pH (<7.0), this value is less negative, compatible with a redox-linked protonation of the flavodoxin hydroquinone. A comparative study is presented for Desulfovibrio salexigens NCIB 8403 flavodoxin {[}Moura, I., Moura, J. J. G., Bruschi, M. and LeGall, J. (1980) Biochim. Biophys. Acta 591, 1-8]. The complete primary amino acid sequence was obtained by automated Edman degradation from peptides obtained by chemical and enzymic procedures. The amino acid sequence was confirmed by FAB/MS. Using the previously determined tridimensional structure of Desulfovibrio vulgaris flavodoxin as a model {[}similarity, 48,6%; Watenpaugh, K. D., Sieker, L. C., Jensen, L. H., LeGall, J. and Dubourdieu M. (1972) Proc. Natl Acad. Sci. USA 69, 3185-3188], the tridimensional structure of D. desulfuricans ATCC 27774 flavodoxin was predicted using AMBER force-field calculations.