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2005
Martins, C. E., C. M. Cordas, C. G. Timoteo, P. Tavares, and AS Pereira. "Nitric oxide reductase from Pseudomonas nautica." Eur Biophys J. 34 (2005): 663. Abstract
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Nunes, Isabel L., and José M. Cabeças. "Noise Management at Work." Enterprise and Work Innovation Studies. 1 (2005): 75-81. Abstract
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Palma, L. B., F. V. Coito, and R. N. da Silva. "Process fault diagnosis approach based on neural observers." Emerging Technologies and Factory Automation, 2005. ETFA 2005. 10th IEEE Conference on. Vol. 1. IEEE, 2005. 4–pp. Abstract
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Gomes, Lu{\'ı}s, and Anikó Costa. "Remote Laboratory Support for an Introductory Microprocessor Course." 2005 International Conference on Microelectronics Systems Education, {MSE} 2005, Anaheim, CA, USA, June 12-13, 2005. 2005. 21-22. Abstract
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Cerdeira, J. O., and L. S. Pinto. "Requiring connectivity in the set covering problem." Journal of Combinatorial Optimization. 9 (2005): 35-47. Abstract
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Canhola, P., N. Martins, L. Raniero, S. Pereira, E. Fortunato, I. Ferreira, and R. Martins. "Role of annealing environment on the performances of large area ITO films produced by rf magnetron sputtering." Thin Solid Films. 487.1 (2005): 271-276. Abstract
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Canhola, P.a, Martins Raniero Pereira Fortunato Ferreira Martins N. a L. b. "Role of annealing environment on the performances of large area ITO films produced by rf magnetron sputtering." Thin Solid Films. 487 (2005): 271-276. AbstractWebsite

This paper presents the role of the deposition pressure and the rf power density on the optimization of the electrical, optical and structural properties of large area (30×40 cm2) indium-tin oxide films produced by rf magnetron sputtering, with growth rates exceeding 30 nm/min. The films were produced at room temperature under reactive plasma, followed by a thermal annealing in air or formic gas. The best films' uniformity (≤±5%), compactness and surface smoothness (preferential growth orientation along (222)); and electro-optical properties (resistivity and mobility, respectively, of about 7×10-4 Ω cm and 19.6 cm2 V -1 s-1, with transmittance of about 92%) were achieved using a rf power density of 0.92 W cm-2 and a pressure of 8.5×10-2 Pa, followed by its annealing in air by about 2 h at 773 K. © 2005 Elsevier B.V. All rights reserved.

Coito, F., P. Almeida, and L. B. Palma. "SMCRVI-a Labview/Matlab based tool for remote monitoring and control." Emerging Technologies and Factory Automation, 2005. ETFA 2005. 10th IEEE Conference on. Vol. 2. IEEE, 2005. 6–pp. Abstract
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Coito, F., J. M. Lemos, and SS Alves. "Stochastic Extremum Seeking in the Presence of Constraints." World Congress. Vol. 16. 2005. 266. Abstract
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Gomes, Lu\'ıs, João Paulo Barros, and Anikó Costa. "Structuring Mechanisms in Petri Net Models: From specification to FPGA based implementations." Design of embedded control systems. 2005. 153-166. Abstract
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Pinheiro, C., A. P. Rodrigues, IS de Carvalho, M. M. Chaves, and C. P. Ricardo. "Sugar metabolism in developing lupin seeds is affected by a short-term water deficit." Journal of Experimental Botany. 56 (2005): 2705-2712. Abstract
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Pinheiro, C., A. P. Rodrigues, IS de Carvalho, M. M. Chaves, and C. P. Ricardo. "Sugar metabolism in developing lupin seeds is affected by a short-term water deficit." Journal of Experimental Botany. 56 (2005): 2705-2712. Abstract
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Aguas, H., L. Pereira, D. Costa, E. Fortunato, and R. Martins. "Super linear position sensitive detectors using MIS structures." Optical Materials. 27 (2005): 1088-1092. Abstract
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Santos-Silva, T., J. Trincao, AL Carvalho, C. Bonifacio, F. Auchere, I. Moura, JJG Moura, and MJ Romao. "Superoxide reductase from the syphilis spirochete Treponema pallidum: crystallization and structure determination using soft X-rays." Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 61 (2005): 967-970. Abstract
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Santos-Silva, T., J. Trincão, AL Carvalho, C. Bonifácio, F. Auchère, I. Moura, JJG Moura, and MJ Romão. "Superoxide reductase from the syphilis spirochete Treponema pallidum: Crystallization and structure determination using soft X-rays." Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 61 (2005): 967-970. Abstract
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Gomes, Lu{\'ı}s, and Anikó Costa. "Teaching Formal Methods Within System-on-a-Programmable-Chip Design." 2005 International Conference on Microelectronics Systems Education, {MSE} 2005, Anaheim, CA, USA, June 12-13, 2005. 2005. 105-106. Abstract
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Gomes, Luís, João Paulo, Anikó Costa, Rui Pais, and Filipe Moutinho. "Towards Usage of Formal Methods within Embedded Systems Co-Design." Proceedings of the 2005 IEEE Conference on Emerging Technologies and Factory Automation. 2005. Abstract
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Chilibon, I., J. Marat-Mendes, R. Igreja, and C. J. Dias. "Ultrasound role in sol-gel processing of PbTiO(3) ceramics." Journal of Optoelectronics and Advanced Materials. 7 (2005): 2727-2735. Abstract
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Chilibon, I., J. Marat-Mendes, R. Igreja, and C. J. Dias. "Ultrasound role in sol-gel processing of PbTiO(3) ceramics." Journal of Optoelectronics and Advanced Materials. 7 (2005): 2727-2735. Abstract
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Liu, Hua Rong, Pedro T. Gomes, Sandra I. Costa, Teresa M. Duarte, R. Branquinho, Anabela C. Fernandes, James C. W. Chien, R. P. Singh, and Maria M. Marques. "{Highly active new $\alpha$-diimine nickel catalyst for the polymerization of $\alpha$-olefins}." Journal of Organometallic Chemistry. 690 (2005): 1314-1323. Abstract

A new silylated $\alpha$-diimine ligand, bis[N,N′-(4-tert-butyl- diphenylsilyl-2,6-diisopropylphenyl)imino]acenaphthene 3, and its corresponding Ni(II) complex, {\{}bis[N,N′-(4-tert-butyl-diphenylsilyl-2,6- diisopropylphenyl)imino]acenaphthene{\}}dibromonickel 4, have been synthesized and characterized. The crystal structures of 3 and 4 were determined by X-ray crystallography. In the solid state, complex 4 is a dimer with two bridging Br ligands linking the two nickel centers, which have square pyramidal geometries. Complex 4, activated either by diethylaluminum chloride (DEAC) or methylaluminoxane (MAO) produces very active catalyst systems for the polymerization of ethylene and moderately active for the polymerization of propylene. The activity values are in the order of magnitude of 107 g PE (mol Ni [E] h)-1 for the polymerization of ethylene and of 105 g PP (mol Ni [P] h)-1 for the polymerization of propylene. NMR analysis shows that branched polyethylenes (PE) are obtained at room or higher temperatures and almost linear PE is obtained at 0°C with 4/DEAC. © 2004 Elsevier B.V. All rights reserved.

2004
Casimiro, T., F. Montilla, S. Garcia, T. Aviles, S. Raeissi, A. Shariati, C. J. Peters, M. N. da Ponte, and A. Aguiar-Ricardo. "Phase behaviour of the catalyst dicarbonyl (eta(5)-cyclopentadienyl)-cobalt in carbon dioxide." J Supercrit Fluid. 31 (2004): 1-8. AbstractWebsite

The phase behaviour of the binary mixture of carbon dioxide and the cobalt complex dicarbonyl(eta(5)-cyclopentadienyl)-cobalt, CPCo(CO)(2), has been investigated. This organometallic compound is one of the most effective catalysts of cyclotrimerization reactions of arylisocyanates and alkynes. Vapour-liquid equilibrium (VLE) measurements were undertaken in a static analytical apparatus at 313.15, 323.15 and 363.15 K at pressures up to 15 MPa. p, T isopleths were measured by a synthetic method in a Cailletet apparatus. Nine different compositions ranging from 17.56 to 94.23 mol% of CO2 were measured up to 15 MPa. Modelling with the Peng-Robinson equation of state (PR EOS) gave reasonable results in the correlation of the experimental phase equilibrium compositions using two temperature-dependent interaction parameters. (C) 2003 Elsevier B.V. All rights reserved.

Auchere, F., R. Sikkink, C. Cordas, P. Raleiras, P. Tavares, I. Moura, and JJG Moura. "Overexpression and purification of Treponema pallidum rubredoxin; kinetic evidence for a superoxide-mediated electron transfer with the superoxide reductase neelaredoxin." Journal of Biological Inorganic Chemistry. 9.7 (2004): 839-849. Abstract
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Auchere, F., R. Sikkink, C. Cordas, P. Raleiras, P. Tavares, I. Moura, and J. Moura. "{Overexpression and purification of Treponema pallidum rubredoxin; kinetic evidence for a superoxide-mediated electron transfer with the superoxide reductase neelaredoxin}." J Biol Inorg Chem. 9 (2004): 839-849. Abstract
{Superoxide reductases are a class of non-haem iron enzymes which catalyse the monovalent reduction of the superoxide anion O2- into hydrogen peroxide and water. Treponema pallidum (Tp), the syphilis spirochete, expresses the gene for a superoxide reductase called neelaredoxin, having the iron protein rubredoxin as the putative electron donor necessary to complete the catalytic cycle. In this work, we present the first cloning, overexpression in Escherichia coli and purification of the Tp rubredoxin. Spectroscopic characterization of this 6 kDa protein allowed us to calculate the molar absorption coefficient of the 490 nm feature of ferric iron
Pauleta, S. R., A. Cooper, M. Nutley, N. Errington, S. Harding, F. Guerlesquin, C. F. Goodhew, I. Moura, JJG Moura, and G. W. Pettigrew. "A copper protein and a cytochrome bind at the same site on bacterial cytochrome c peroxidase." Biochemistry. 43 (2004): 14566-14576. AbstractWebsite

Pseudoazurin binds at a single site on cytochrome c peroxidase from Paracoccus pantotrophus with a K-d of 16.4 muM at 25 degreesC, pH 6.0, in an endothermic reaction that is driven by a large entropy change. Sedimentation velocity experiments confirmed the presence of a single site, although results at higher pseudoazurin concentrations are complicated by the dimerization of the protein. Microcalorimetry, ultracentrifugation, and H-1 NMR spectroscopy studies in which cytochrome c550, pseudoazurin, and cytochrome c peroxidase were all present could be modeled using a competitive binding algorithm. Molecular docking simulation of the binding of pseudoazurin to the peroxidase in combination with the chemical shift perturbation pattern for pseudoazurin in the presence of the peroxidase revealed a group of solutions that were situated close to the electron-transferring heme with Cu-Fe distances of about 14 Angstrom. This is consistent with the results of H-1 NMR spectroscopy, which showed that pseudoazurin binds closely enough to the electron - transferring heme of the peroxidase to perturb its set of heme methyl resonances. We conclude that cytochrome c550 and pseudoazurin bind at the same site on the cytochrome c peroxidase and that the pair of electrons required to restore the enzyme to its active state after turnover are delivered one-by-one to the electron-transferring heme.