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2005
Gomes, Luís, João Paulo, Anikó Costa, Rui Pais, and Filipe Moutinho. "Towards Usage of Formal Methods within Embedded Systems Co-Design." Proceedings of the 2005 IEEE Conference on Emerging Technologies and Factory Automation. 2005. Abstract
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Chilibon, I., J. Marat-Mendes, R. Igreja, and C. J. Dias. "Ultrasound role in sol-gel processing of PbTiO(3) ceramics." Journal of Optoelectronics and Advanced Materials. 7 (2005): 2727-2735. Abstract
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Chilibon, I., J. Marat-Mendes, R. Igreja, and C. J. Dias. "Ultrasound role in sol-gel processing of PbTiO(3) ceramics." Journal of Optoelectronics and Advanced Materials. 7 (2005): 2727-2735. Abstract
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Liu, Hua Rong, Pedro T. Gomes, Sandra I. Costa, Teresa M. Duarte, R. Branquinho, Anabela C. Fernandes, James C. W. Chien, R. P. Singh, and Maria M. Marques. "{Highly active new $\alpha$-diimine nickel catalyst for the polymerization of $\alpha$-olefins}." Journal of Organometallic Chemistry. 690 (2005): 1314-1323. Abstract

A new silylated $\alpha$-diimine ligand, bis[N,N′-(4-tert-butyl- diphenylsilyl-2,6-diisopropylphenyl)imino]acenaphthene 3, and its corresponding Ni(II) complex, {\{}bis[N,N′-(4-tert-butyl-diphenylsilyl-2,6- diisopropylphenyl)imino]acenaphthene{\}}dibromonickel 4, have been synthesized and characterized. The crystal structures of 3 and 4 were determined by X-ray crystallography. In the solid state, complex 4 is a dimer with two bridging Br ligands linking the two nickel centers, which have square pyramidal geometries. Complex 4, activated either by diethylaluminum chloride (DEAC) or methylaluminoxane (MAO) produces very active catalyst systems for the polymerization of ethylene and moderately active for the polymerization of propylene. The activity values are in the order of magnitude of 107 g PE (mol Ni [E] h)-1 for the polymerization of ethylene and of 105 g PP (mol Ni [P] h)-1 for the polymerization of propylene. NMR analysis shows that branched polyethylenes (PE) are obtained at room or higher temperatures and almost linear PE is obtained at 0°C with 4/DEAC. © 2004 Elsevier B.V. All rights reserved.

2004
Casimiro, T., F. Montilla, S. Garcia, T. Aviles, S. Raeissi, A. Shariati, C. J. Peters, M. N. da Ponte, and A. Aguiar-Ricardo. "Phase behaviour of the catalyst dicarbonyl (eta(5)-cyclopentadienyl)-cobalt in carbon dioxide." J Supercrit Fluid. 31 (2004): 1-8. AbstractWebsite

The phase behaviour of the binary mixture of carbon dioxide and the cobalt complex dicarbonyl(eta(5)-cyclopentadienyl)-cobalt, CPCo(CO)(2), has been investigated. This organometallic compound is one of the most effective catalysts of cyclotrimerization reactions of arylisocyanates and alkynes. Vapour-liquid equilibrium (VLE) measurements were undertaken in a static analytical apparatus at 313.15, 323.15 and 363.15 K at pressures up to 15 MPa. p, T isopleths were measured by a synthetic method in a Cailletet apparatus. Nine different compositions ranging from 17.56 to 94.23 mol% of CO2 were measured up to 15 MPa. Modelling with the Peng-Robinson equation of state (PR EOS) gave reasonable results in the correlation of the experimental phase equilibrium compositions using two temperature-dependent interaction parameters. (C) 2003 Elsevier B.V. All rights reserved.

Auchere, F., R. Sikkink, C. Cordas, P. Raleiras, P. Tavares, I. Moura, and JJG Moura. "Overexpression and purification of Treponema pallidum rubredoxin; kinetic evidence for a superoxide-mediated electron transfer with the superoxide reductase neelaredoxin." Journal of Biological Inorganic Chemistry. 9.7 (2004): 839-849. Abstract
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Auchere, F., R. Sikkink, C. Cordas, P. Raleiras, P. Tavares, I. Moura, and J. Moura. "{Overexpression and purification of Treponema pallidum rubredoxin; kinetic evidence for a superoxide-mediated electron transfer with the superoxide reductase neelaredoxin}." J Biol Inorg Chem. 9 (2004): 839-849. Abstract
{Superoxide reductases are a class of non-haem iron enzymes which catalyse the monovalent reduction of the superoxide anion O2- into hydrogen peroxide and water. Treponema pallidum (Tp), the syphilis spirochete, expresses the gene for a superoxide reductase called neelaredoxin, having the iron protein rubredoxin as the putative electron donor necessary to complete the catalytic cycle. In this work, we present the first cloning, overexpression in Escherichia coli and purification of the Tp rubredoxin. Spectroscopic characterization of this 6 kDa protein allowed us to calculate the molar absorption coefficient of the 490 nm feature of ferric iron
Pauleta, S. R., A. Cooper, M. Nutley, N. Errington, S. Harding, F. Guerlesquin, C. F. Goodhew, I. Moura, JJG Moura, and G. W. Pettigrew. "A copper protein and a cytochrome bind at the same site on bacterial cytochrome c peroxidase." Biochemistry. 43 (2004): 14566-14576. AbstractWebsite

Pseudoazurin binds at a single site on cytochrome c peroxidase from Paracoccus pantotrophus with a K-d of 16.4 muM at 25 degreesC, pH 6.0, in an endothermic reaction that is driven by a large entropy change. Sedimentation velocity experiments confirmed the presence of a single site, although results at higher pseudoazurin concentrations are complicated by the dimerization of the protein. Microcalorimetry, ultracentrifugation, and H-1 NMR spectroscopy studies in which cytochrome c550, pseudoazurin, and cytochrome c peroxidase were all present could be modeled using a competitive binding algorithm. Molecular docking simulation of the binding of pseudoazurin to the peroxidase in combination with the chemical shift perturbation pattern for pseudoazurin in the presence of the peroxidase revealed a group of solutions that were situated close to the electron-transferring heme with Cu-Fe distances of about 14 Angstrom. This is consistent with the results of H-1 NMR spectroscopy, which showed that pseudoazurin binds closely enough to the electron - transferring heme of the peroxidase to perturb its set of heme methyl resonances. We conclude that cytochrome c550 and pseudoazurin bind at the same site on the cytochrome c peroxidase and that the pair of electrons required to restore the enzyme to its active state after turnover are delivered one-by-one to the electron-transferring heme.

Bursakov, SA, OY Gavel, G. Di Rocco, J. Lampreia, J. Calvete, AS Pereira, JJG Moura, and I. Moura. "Antagonists Mo and Cu in a heterometallic cluster present on a novel protein (orange protein) isolated from Desulfovibrio gigas." JOURNAL OF INORGANIC BIOCHEMISTRY. 98 (2004): 833-840. Abstract
An orange-coloured protein (ORP) isolated from Desulfovibrio gigas, a sulphate reducer, has been previously shown by extended X-ray absorption fine structure (EXAFS) to contain a novel mixed-metal sulphide cluster of the type {[}S2MoS2CuS2MoS2] {[}J. Am. Chem. Soc. 122 (2000) 8321]. We report here the purification and the biochemical/spectroscopic characterisation of this novel protein. ORP is a soluble monomeric protein (11.8 kDa). The cluster is non-covalently bound to the polypeptide chain. The presence of a MoS42- moiety in the structure of the cofactor contributes with a quite characteristic UV-Vis spectra, exhibiting an orange colour, with intense absorption peaks at 480 and 338 nm. Pure ORP reveals an Abs(480)/Abs(338) ratio of 0.535. The gene sequence coding for ORP as well as the amino acid sequence was determined. The putative biological function of ORP is discussed. (C) 2003 Elsevier Inc. All rights reserved.
Gil, A. M., I. Duarte, E. Cabrita, BJ Goodfellow, M. Spraul, and R. Kerssebaum. "Exploratory applications of diffusion ordered spectroscopy to liquid foods: an aid towards spectral assignment." Analytica Chimica Acta. 506 (2004): 215-223. Abstract
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Zhang, S., L. Raniero, E. Fortunato, L. Pereira, N. Martins, P. Canhola, I. Ferreira, N. Nedev, H. Águas, and R. Martins. "{Characterization of silicon carbide thin films prepared by VHF-PECVD technology}." Journal of Non-Crystalline Solids. 338-340 (2004): 530-533. AbstractWebsite
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PL, Granja, Silva AIN, Borges JP, Barrias CC, and Amaral IF. "Preparation and characterization of injectable chitosan-hydroxyapatite microspheres." BIOCERAMICS 16. 254-2 (2004): 573-576. Abstract
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MC, Lanca, Neagu ER, Neagu RM, Dias CJ, Marat-Mendes JN, and Das-Gupta DK. "Space charge studies in LDPE using combined isothermal and non-isothermal current measurements." IEEE TRANSACTIONS ON DIELECTRICS AND ELECTRICAL INSULATION. 11 (2004): 25-34. Abstract
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Casimiro, T., A. Shariati, C. J. Peters, M. N. De Ponte, and A. Aguiar-Ricardo. "Phase behavior studies of a perfluoropolyether in high-pressure carbon dioxide." Fluid Phase Equilibria. 224.2 (2004): 257-261. AbstractWebsite
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Casimiro, T., F. Montilla, S. Garcia, T. Avilés, S. Raeissi, A. Shariati, C. J. Peters, M. Nunes Da Ponte, and A. Aguiar-Ricardo. "Phase behaviour of the catalyst dicarbonyl(η5- cyclopentadienyl)-cobalt in carbon dioxide." Journal of Supercritical Fluids. 31.1 (2004): 1-8. AbstractWebsite
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Aguiar-Ricardo, A., M. Temtem, T. Casimiro, and N. Ribeiro. "A visual acoustic high-pressure cell for the study of critical behavior of nonsimple mixtures." Review of Scientific Instruments. 75.10 I (2004): 3200-3202. AbstractWebsite
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Savoini, B., D. Caceres, R. Gonzalez, Y. Chen, JV Pinto, R. C. da Silva, and E. Alves. "Copper nanocolloids in MgO crystals implanted with Cu ions." Nuclear Instruments & Methods in Physics Research Section B-Beam Interactions with Materials and Atoms. 218 (2004): 148-152. AbstractWebsite
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Dos Santos Paula, A., J. P. H. G. Canejo, R. J. C. Silva, and FMB Fernandes. "Effect of thermal cycling on the transformation temperatures of a Ni-Ti shape memory alloy." Materials Science Forum. 455-456 (2004): 346-350. AbstractWebsite
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Tardio, M., R. Ramirez, R. Gonzalez, JV Pinto, R. C. da Silva, E. Alves, and Y. Chen. "Electrical conductivity of as-grown and oxidized MgO : Li crystals implanted with Li ions." Nuclear Instruments & Methods in Physics Research Section B-Beam Interactions with Materials and Atoms. 218 (2004): 164-169. AbstractWebsite
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Cruz, M. M., R. C. da Silva, JV Pinto, R. G. Gonzalez, E. Alves, and M. Godinho. "Magnetic behavior of Co and Ni implanted MgO." Journal of Magnetism and Magnetic Materials. 272 (2004): 840-842. AbstractWebsite
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Filipe, S., João M. Maia, and M. T. Cidade. "PP/LCP blends: Influence of the LCP content on the mechanical, rheological and morphological properties." Vol. 455. Trans Tech Publications, 2004. 476-479. Abstract
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Gomes, M.Ivette, Frederico Caeiro, and Fernanda Figueiredo. "Bias reduction of a tail index estimator through an external estimation of the second-order parameter." Statistics. 38 (2004): 497-510. Abstract

{Summary: We first consider a class of consistent semi-parametric estimators of a positive tail index $\gamma$, parametrised in a tuning or control parameter $\alpha$. Such a control parameter enables us to have access for any available sample, to an estimator of the tail index $\gamma$ with a null dominant component of asymptotic bias and consequently with a reasonably flat mean squared error pattern, as a function of $k$, the number of top-order statistics considered.\par Such a control parameter depends on a second-order parameter $\rho$, which will be adequately estimated so that we may achieve a high efficiency relative to the classical Hill estimator [ıt B. M. Hill}, Ann. Stat. 3, 1163–1174 (1975; Zbl 0323.62033)] provided we use a number of top-order statistics larger than the one usually required for the estimation through the Hill estimator. An illustration of the behaviour of the estimators is provided, through the analysis of the daily log-returns on the Euro-US\$ exchange rates.}

Xavier, J. C., N. M. Garrido, M. Oliveira, J. L. Morais, P. P. Camanho, and F. Pierron. "A comparison between the Iosipescu and off-axis shear test methods for the characterization of ıt Pinus pinaster Ait." Composites Part A: Applied Science and Manufacturing. 35 (2004): 827-840. Abstract

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