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2005
J. Araújo, and M. Toro Proceedings of VIII Workshop in Requirements Engineering. Eds. J. Ara, A. Toro, and J. F. Cunha. Porto, Portugal: FEUP, 2005. Abstract

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Palma, L. B., F. Coito, and R. Neves-Silva. "Robust fault diagnosis approach using analytical and knowledge based techniques applied to a water tank system." Journal of Engineering Intelligent Systems. 13.4 (2005): 237-244.
Seco, João Costa, and Luís Caires. "Subtyping First-Class Polymorphic Components." Programming Languages and Systems, 14th European Symposium on Programming, ESOP 2005. 2005.
Klen, Edmilson, Tiago Cardoso, and L. M. Camarinha-Matos. "Teaching Initiatives on Collaborative Networked Organizations." Proceedings of 38th CIRP-International Seminar on Manufacturing Systems. 2005. 16-18. Abstract

The technological evolution brought the society to a networked reality. New organizational forms are being created, towards a better response to market opportunities, both in terms of time-to-market and added-value creation. In this context the Collaborative Networked Organizations (CNO) paradigm appears as a good organizational form to attend market needs. To avoid the conventional barriers in the implementation of this new organizational form, education and training are very important activities, already building an international consensus. This paper surveys current work on teaching initiatives in the CNO area around the world.

Milan, J., P. Christiansen, and O. Mateus. "A three-dimensionally preserved sauropod manus impression from the Upper Jurassic of Portugal: Implications for sauropod manus shape and locomotor mechanics." Kaupia. 14 (2005): 47-52. Abstractmilan_et_al_mateus_2005_-_3d_sauropod_manus_track_l_j_portugal.pdfWebsite

Sauropods were the largest animals ever to walk the earth, and evolved several specializations in their limbs in order to support their body mass. Their legs became columnar and their manual digits became reduced and encapsulated in tissue to form a single weight-bearing unit in the derived sauropods. A new three-dimensionally preserved cast of a sauropod manus, found in the Upper Jurassic Lourinhã Formation, Portugal, demonstrates not only the shape, but also the actual movements of the sauropod manus during the stride. The manus cast is 32 cm deep, and show the manus to be hoof-shaped and lacking any impressions of individual digits, except for digit I, the pollex. Well preserved striations from skin on the sides of the cast show that the manus was covered in rough, tubercular skin. The width of the manus cast is consistent from top to bottom, demonstrating that the manus was brought down and lifted vertically before any parasaggital movement of the upper limb took place.

Phillips, AJL, A. Alves, A. Correia, and J. Luque. "Two new species of Botryosphaeria with brown, one-septate ascospores and Dothiorella anamorphs." Mycologia. 97 (2005): 513-529.
Caeiro, F., and M. I. Gomes Uma classe de estimadores do parâmetro de escala de segunda ordem.. Actas do XII Congresso Anual da Sociedade Portuguesa de Estatística. Évora, Portugal, 2005.caeirof-spe2004.pdf
Acosta, DR, H. Gomez, M. Adachi, J. Jiu, T. Aernouts, HZ Chen, H. Aguas, S. Zhang, MM Ahmed, KS Karimov, and others. "Acciarri, M., S. Binetti, M. Bollani, A. Comotti, L. Fumagalli, S. Pizzini and H. von Kanel." Solar Energy Materials & Solar Cells. 87 (2005): 825-834. Abstract
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Coito, F., and J. Lemos. "Adaptive Optimization with Constraints: Convergence and oscillatory behaviour." Pattern Recognition and Image Analysis (2005): 335-366. Abstract
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Palma, A., M. De Carvalho, N. Barata, T. Evangelista, P. Chicau, M. REGALLA, and J. Costa. "Biochemical characterization of plasma in amyotrophic lateral sclerosis: Amino acid and protein composition." Amyotrophic Lateral Sclerosis and Other Motor Neuron Disorders. 6 (2005): 104-110. Abstract
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Palma, L. B., F. V. Coito, and R. N. da Silva. "Combined approach to fault diagnosis based on principal components and influence matrix." Intelligent Signal Processing, 2005 IEEE International Workshop on. IEEE, 2005. 171-176. Abstract
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Cerdeira, J. O., K. J. Gaston, and L. S. Pinto. "Connectivity in priority area selection for conservation." Environmental Modeling and Assessment. 10 (2005): 183-192. Abstract
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Dyke, J. M., G. Levita, A. Morris, J. S. Ogden, A. A. Dias, M. Algarra, J. P. Santos, M. L. Costa, P. Rodrigues, M. M. Andrade, and M. T. Barros. "Contrasting Behavior in Azide Pyrolyses: An Investigation of the Thermal Decompositions of Methyl Azidoformate, Ethyl Azidoformate and 2-Azido-N, N-dimethylacetamide by Ultraviolet Photoelectron Spectroscopy and Matrix Isolation Infrared Spectroscopy." Chemistry - A European Journal. 11 (2005): 1665-1676. Abstract
The thermal decompositions of methyl azidoformate (N3COOMe), ethyl azidoformate (N3COOEt) and 2-azido-N,N-dimethylacetamide (N3CH2CONMe2) have been studied by matrix isolation infrared spectroscopy and real-time ultraviolet photoelectron spectroscopy. N2 appears as an initial pyrolysis product in all systems, and the principal interest lies in the fate of the accompanying organic fragment. For methyl azidoformate, four accompanying products were observed: HNCO, H2CO, CH2NH and CO2, and these are believed to arise as a result of two competing decomposition routes of a four-membered cyclic intermediate. Ethyl azidoformate pyrolysis yields four corresponding products: HNCO, MeCHO, MeCHNH and CO2, together with the five-membered-ring compound 2-oxazolidone. In contrast, the initial pyrolysis of 2-azido-N,N-dimethyl acetamide, yields the novel imine intermediate Me2NCOCHNH, which subsequently decomposes into dimethyl formamide (HCONMe2), CO, Me2NH and HCN. This intermediate was detected by matrix isolation IR spectroscopy, and its identity confirmed both by a molecular orbital calculation of its IR spectrum, and by the temperature dependence and distribution of products in the PES and IR studies. Mechanisms are proposed for the formation and decomposition of all the products observed in these three systems, based on the experimental evidence and the results of supporting molecular orbital calculations.
Dyke, J. M., G. Levita, A. Morris, J. S. Ogden, A. A. Dias, M. Algarra, J. P. Santos, M. L. Costa, P. Rodrigues, M. M. Andrade, and M. T. Barros. "Contrasting Behavior in Azide Pyrolyses: An Investigation of the Thermal Decompositions of Methyl Azidoformate, Ethyl Azidoformate and 2-Azido-N, N-dimethylacetamide by Ultraviolet Photoelectron Spectroscopy and Matrix Isolation Infrared Spectroscopy." Chemistry - A European Journal. 11 (2005): 1665-1676. Abstract

The thermal decompositions of methyl azidoformate (N3COOMe), ethyl azidoformate (N3COOEt) and 2-azido-N,N-dimethylacetamide (N3CH2CONMe2) have been studied by matrix isolation infrared spectroscopy and real-time ultraviolet photoelectron spectroscopy. N2 appears as an initial pyrolysis product in all systems, and the principal interest lies in the fate of the accompanying organic fragment. For methyl azidoformate, four accompanying products were observed: HNCO, H2CO, CH2NH and CO2, and these are believed to arise as a result of two competing decomposition routes of a four-membered cyclic intermediate. Ethyl azidoformate pyrolysis yields four corresponding products: HNCO, MeCHO, MeCHNH and CO2, together with the five-membered-ring compound 2-oxazolidone. In contrast, the initial pyrolysis of 2-azido-N,N-dimethyl acetamide, yields the novel imine intermediate Me2NCOCHNH, which subsequently decomposes into dimethyl formamide (HCONMe2), CO, Me2NH and HCN. This intermediate was detected by matrix isolation IR spectroscopy, and its identity confirmed both by a molecular orbital calculation of its IR spectrum, and by the temperature dependence and distribution of products in the PES and IR studies. Mechanisms are proposed for the formation and decomposition of all the products observed in these three systems, based on the experimental evidence and the results of supporting molecular orbital calculations.

BRITO PALMA, L., F. V. Coito, and R. NEVES DA SILVA. "Diagnosis of parametric faults based on identification and statistical methods." Decision and Control, 2005 and 2005 European Control Conference. CDC-ECC'05. 44th IEEE Conference on. IEEE, 2005. 3838-3843. Abstract
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Alanen, Marcus, Jordi Cabot, Miguel Goulão, and José Sáez. "Doctoral symposium." UML Modeling Languages and Applications. Eds. Nuno Jardim Nunes, Bran Selic, Alberto Rodrigues da Silva, and Ambrosio Toval Alvarez. Vol. 3297. Springer Berlin / Heidelberg, 2005. 85-93. Abstract
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Alves, A., AJL Phillips, I. Henriques, and A. Correia. "Evaluation of amplified ribosomal DNA restriction analysis as a method for the identification of Botryosphaeria species." Fems Microbiology Letters. 245 (2005): 221-229. Abstract
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Cabeças, José M., and Isabel L. Nunes. "Fisheries Safety Management." Enterprise and Work Innovation Studies. 1 (2005): 19-26. Abstract
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Gomes, Lu\'ıs, João Paulo Barros, Anikó Costa, Rui Pais, and Filipe Moutinho. "Formal methods for Embedded Systems Co-design: the FORDESIGN project." ReCoSoC. 2005. 143-150. Abstract
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Gomes, Lu\'ıs, and Anikó Costa. "Hardware-level Design Languages." The Industrial Information Technology Handbook. 2005. 1-18. Abstract
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Raniero, L., N. Martins, P. Canhola, S. Zhang, S. Pereira, I. Ferreira, E. Fortunato, and R. Martins. "Influence of the layer thickness and hydrogen dilution on electrical properties of large area amorphous silicon p–i–n solar cell." Solar energy materials and solar cells. 87.1 (2005): 349-355. Abstract
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Carvalho, AL, VMR Pires, TM Gloster, JP Turkenburg, JAM Prates, LMA Ferreira, MJ Romao, GJ Davies, CMGA Fontes, and HJ Gilbert. "Insights into the structural determinants of cohesin dockerin specificity revealed by the crystal structure of the type II cohesin from Clostridium thermocellum SdbA." Journal of Molecular Biology. 349 (2005): 909-915. Abstract
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ITiCSE ’05: Proceedings of the 10th annual SIGCSE conference on Innovation and technology in computer science education. Eds. José C. Cunha, William Fleischman, João Louren{\c c}o, and Viera K. Proulx. New York, NY, USA: ACM, 2005.
Amaral, A., Nunes C. de Carvalho, P. Brogueira, G. Lavareda, LV Melo, and M. H. Godinho. "ITO properties on anisotropic flexible transparent cellulosic substrates under different stress conditions." Materials Science and Engineering: B. 118.1 (2005): 183-186. Abstract
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