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2020
Syndikus, I., M. Petri, A. O. Macchiavelli, S. Paschalis, C. A. Bertulani, T. Aumann, H. Alvarez-Pol, L. Atar, S. Beceiro-Novo, J. Benlliure, J. M. Boillos, K. Boretzky, M. J. G. Borge, B. A. Brown, M. Caamano, C. Caesar, E. Casarejos, W. Catford, J. Cederkäll, S. Chakraborty, L. V. Chulkov, D. Cortina-Gil, E. Cravo, R. Crespo, Datta U. Pramanik, I. Dillmann, Diaz P. Fernandez, Z. Elekes, J. Enders, F. Farinon, L. M. Fraile, D. Galaviz, H. Geissel, R. Gernhäuser, P. Golubev, K. Göbel, M. Heil, M. Heine, A. Heinz, A. Henriques, M. Holl, H. T. Johansson, B. Jonson, N. Kalantar-Nayestanaki, R. Kanungo, A. Kelic-Heil, T. Kröll, N. Kurz, C. Langer, T. Le Bleis, J. Machado, J. Marganiec-Gałązka, E. Nacher, T. Nilsson, C. Nociforo, V. Panin, A. Perea, S. B. Pietri, R. Plag, A. Rahaman, R. Reifarth, A. Revel, G. Ribeiro, C. Rigollet, D. M. Rossi, D. Savran, H. Scheit, H. Simon, O. Sorlin, O. Tengblad, Y. Togano, M. Vandebrouck, V. Volkov, F. Wamers, C. Wheldon, G. L. Wilson, J. S. Winfield, H. Weick, P. Woods, D. Yakorev, M. Zhukov, A. Zilges, K. Zuber, and R. 3B. collaboration. "{Probing the Z=6 spin-orbit shell gap with (p,2p) quasi-free scattering reactions}." Physics Letters B. 809 (2020): 135748. AbstractWebsite

Physics Letters B, 809 (2020) 135748. 10.1016/j.physletb.2020.135748

Mateus, Ayana, and Frederico Caeiro. "A new class of estimators for the shape parameter of a Pareto model." Computational and Mathematical Methods (2020). AbstractWebsite
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Togawa, M., S. Kühn, C. Shah, P. Amaro, R. Steinbrügge, J. Stierhof, N. Hell, M. Rosner, K. Fujii, M. Bissinger, R. Ballhausen, M. Hoesch, J. Seltmann, S. Park, F. Grilo, F. S. Porter, J. P. Santos, M. Chung, T. Stöhlker, J. Wilms, T. Pfeifer, G. V. Brown, M. A. Leutenegger, S. Bernitt, and Crespo J. R. López-Urrutia. "Observation of strong two-electron–one-photon transitions in few-electron ions." Physical Review A. 102 (2020). AbstractWebsite
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Ito, Y., T. Tochio, M. Yamashita, S. Fukushima, A. M. Vlaicu, J. P. Marques, J. M. Sampaio, M. Guerra, J. P. Santos, Ł. Syrocki, K. Słabkowska, E. WÈ©der, M. Polasik, J. Rzadkiewicz, P. Indelicato, Y. Ménesguen, M.-Ch. Lépy, and F. Parente. "Structure of K$\upalpha$1,2- and K$\upbeta$1,3-emission x-ray spectra for Se, Y, and Zr." Physical Review A. 102 (2020). AbstractWebsite
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Caeiro, Frederico, L{\'ı}gia Henriques-Rodrigues, Ivette M. Gomes, and Ivanilda Cabral. "Minimum-variance reduced-bias estimation of the extreme value index: A theoretical and empirical study." Computational and Mathematical Methods (2020). AbstractWebsite
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Murugesan, Gavuthami, Viviana G. Correia, Angelina S. Palma, Wengang Chai, Chunxia Li, Ten Feizi, Eva Martin, Brigitte Laux, Alexandra Franz, Klaus Fuchs, Bernd Weigle, and Paul R. Crocker. "Siglec-15 recognition of sialoglycans on tumor cell lines can occur independently of sialyl Tn antigen expression." Glycobiology (2020). Abstract

Siglec-15 is a conserved sialic acid-binding Ig-like lectin expressed on osteoclast progenitors that plays an important role in osteoclast development and function. It is also expressed by tumor-associated macrophages and by some tumors, where it is thought to contribute to the immunosuppressive microenvironment. It was shown previously that engagement of macrophage-expressed Siglec-15 with tumor cells expressing its ligand, sialyl Tn (sTn), triggered production of TGF-$\beta$. In the present study, we have further investigated the interaction between Siglec-15 and sTn on tumor cells and its functional consequences. Based on binding assays with lung and breast cancer cell lines and glycan-modified cells, we failed to see evidence for recognition of sTn by Siglec-15. However, using a microarray of diverse, structurally-defined glycans, we show that Siglec-15 binds with higher avidity to sialylated glycans other than sTn or related antigen sequences. In addition, we were unable to demonstrate enhanced TGF-$\beta$ secretion following co-culture of Siglec-15-expressing monocytic cells lines with tumor cells expressing sTn, or following Siglec-15 cross-linking with monoclonal antibodies. However, we did observe activation of the SYK/MAPK signaling pathway following antibody cross-linking of Siglec-15 that may modulate the functional activity of macrophages.

Ribeiro, Diana O., Aldino Viegas, Virgínia M. R. Pires, João Medeiros-Silva, Pedro Bule, Wengang Chai, Filipa Marcelo, Carlos M. G. A. Fontes, Eurico J. Cabrita, Angelina S. Palma, and Ana Luísa Carvalho. "Molecular basis for the preferential recognition of beta 1,3-1,4-glucans by the family 11 carbohydrate-binding module from Clostridium thermocellum." The FEBS journal. 287 (2020): 2723-2743. Abstract

Understanding the specific molecular interactions between proteins and $\beta$1,3-1,4-mixed-linked d-glucans is fundamental to harvest the full biological and biotechnological potential of these carbohydrates and of proteins that specifically recognize them. The family 11 carbohydrate-binding module from Clostridium thermocellum (CtCBM11) is known for its binding preference for $\beta$1,3-1,4-mixed-linked over $\beta$1,4-linked glucans. Despite the growing industrial interest of this protein for the biotransformation of lignocellulosic biomass, the molecular determinants of its ligand specificity are not well defined. In this report, a combined approach of methodologies was used to unravel, at a molecular level, the ligand recognition of CtCBM11. The analysis of the interaction by carbohydrate microarrays and NMR and the crystal structures of CtCBM11 bound to $\beta$1,3-1,4-linked glucose oligosaccharides showed that both the chain length and the position of the $\beta$1,3-linkage are important for recognition, and identified the tetrasaccharide Glc$\beta$1,4Glc$\beta$1,4Glc$\beta$1,3Glc sequence as a minimum epitope required for binding. The structural data, along with site-directed mutagenesis and ITC studies, demonstrated the specificity of CtCBM11 for the twisted conformation of $\beta$1,3-1,4-mixed-linked glucans. This is mediated by a conformation-selection mechanism of the ligand in the binding cleft through CH-$π$ stacking and a hydrogen bonding network, which is dependent not only on ligand chain length, but also on the presence of a $\beta$1,3-linkage at the reducing end and at specific positions along the $\beta$1,4-linked glucan chain. The understanding of the detailed mechanism by which CtCBM11 can distinguish between linear and mixed-linked $\beta$-glucans strengthens its exploitation for the design of new biomolecules with improved capabilities and applications in health and agriculture. DATABASE: Structural data are available in the Protein Data Bank under the accession codes 6R3M and 6R31.

Duarte, Susana, {Maria Rosário} do Cabrita, and V. Cruz-Machado. "Business model, lean and green management and industry 4.0: A conceptual relationship." Proceedings of the 13th International Conference on Management Science and Engineering Management, 2019 - Volume 1. Eds. Jiuping Xu, Gheorghe Duca, {Fang Lee } Cooke, and {Syed Ejaz } Ahmed. Advances in Intelligent Systems and Computing. Germany: Springer Verlag, 2020. 359-372. Abstract

The Industry 4.0 addresses a radical change on business processes. Through communication technology, objects interact with each other; the physical and digital worlds merge. This makes an environment more flexible, allowing to respond faster to specific customer requirements. Therefore, businesses need to rapidly adapt to avoid being left behind. A business model is required to meet the new concepts of Industry 4.0. In addition, lean and green characteristics may align with business model elements. Understanding how these concepts interact is something that need clarification. Based on literature review, a conceptual relationship between Business Model (Canvas), Lean and green management approach and Industry 4.0 approach is presented. Lean and green management characteristics are identified to be aligned through a Business Model Canvas perspective. Also, the concepts of the Industry 4.0 can be applied in each element of the Business Model Canvas. Managers and entrepreneurs can create, design or redefine their business knowing the lean and green application and Industry 4.0 execution. This research aims to contribute to the discussion of the relationships between these concepts. To the authors’ knowledge, this work is one of the first to try to relate these concepts.

Vendele, Ingrida, Janet A. Willment, Lisete M. Silva, Angelina S. Palma, Wengang Chai, Yan Liu, Ten Feizi, Maria Spyrou, Mark H. T. Stappers, Gordon D. Brown, and Neil A. R. Gow. "{Mannan detecting C-type lectin receptor probes recognise immune epitopes with diverse chemical, spatial and phylogenetic heterogeneity in fungal cell walls.}." PLoS pathogens. 16 (2020): e1007927. Abstract

During the course of fungal infection, pathogen recognition by the innate immune system is critical to initiate efficient protective immune responses. The primary event that triggers immune responses is the binding of Pattern Recognition Receptors (PRRs), which are expressed at the surface of host immune cells, to Pathogen-Associated Molecular Patterns (PAMPs) located predominantly in the fungal cell wall. Most fungi have mannosylated PAMPs in their cell walls and these are recognized by a range of C-type lectin receptors (CTLs). However, the precise spatial distribution of the ligands that induce immune responses within the cell walls of fungi are not well defined. We used recombinant IgG Fc-CTLs fusions of three murine mannan detecting CTLs, including dectin-2, the mannose receptor (MR) carbohydrate recognition domains (CRDs) 4-7 (CRD4-7), and human DC-SIGN (hDC-SIGN) and of the $\beta$-1,3 glucan-binding lectin dectin-1 to map PRR ligands in the fungal cell wall of fungi grown in vitro in rich and minimal media. We show that epitopes of mannan-specific CTL receptors can be clustered or diffuse, superficial or buried in the inner cell wall. We demonstrate that PRR ligands do not correlate well with phylogenetic relationships between fungi, and that Fc-lectin binding discriminated between mannosides expressed on different cell morphologies of the same fungus. We also demonstrate CTL epitope differentiation during different phases of the growth cycle of Candida albicans and that MR and DC-SIGN labelled outer chain N-mannans whilst dectin-2 labelled core N-mannans displayed deeper in the cell wall. These immune receptor maps of fungal walls of in vitro grown cells therefore reveal remarkable spatial, temporal and chemical diversity, indicating that the triggering of immune recognition events originates from multiple physical origins at the fungal cell surface.

Martins, L., P. Amaro, S. Pessanha, M. Guerra, J. Machado, M. L. Carvalho, J. P. Santos, and P. Indelicato. "{Overview and calculation of X-ray K-shell transition yields for comprehensive data libraries}." X-Ray Spectrom.. 62 (2020): 63-26. AbstractWebsite

The simulation of atomic relaxation relies on data libraries with tabulated partial fluorescence yield values of radiative transitions, commonly derived from the Evaluated Atomic Data Library (EADL)....

Machado, Jorge, {Patrícia M. S. } Carvalho, Ana Félix, Delfin Doutel, {José Paulo} Santos, {Maria Luísa} Carvalho, and Sofia Pessanha. "Accuracy improvement in XRF analysis for the quantification of elements ranging from tenths to thousands μg g-1in human tissues using different matrix reference materials." Journal of Analytical Atomic Spectrometry. 35 (2020): 2920-2927. Abstract

In this work, we aim at achieving the most accurate quantitative determination of elements in human tissues by means of X-ray Fluorescence spectrometry using the external calibration approach. A calibration curve built using a set of certified reference materials (CRM) of animal tissue was compared with the one obtained with a set of CRMs of plants and leaves with lower atomic number Z but with correction of the matrix using the scattering peaks of the X-ray tube anode. Finally, a calibration curve combining the two sets of CRMs was built and the accuracy of the quantification using the three methods was compared and a more precise method of quantification was obtained. This improved approach was tested on five paired samples of normal and tumour human tissue. Despite the high heterogeneity of the samples, and given the improvement in accuracy of the measurements, significant differences were found in the elemental concentration of low-Z elements. This journal is

Carvalho, Patr{\'ı}cia M. S., Sofia Pessanha, Jorge Machado, Ana Lu{\'ı}sa Silva, João Veloso, Diogo Casal, Diogo Pais, and José Paulo Santos. "Energy dispersive X-ray fluorescence quantitative analysis of biological samples with the external standard method." Spectrochimica Acta Part B: Atomic Spectroscopy. 174 (2020): 105991. AbstractWebsite
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Carvalho, Patr{\'ıcia M. S., Sofia Pessanha, Jorge Machado, Ana Lu{\'ısa Silva, João Veloso, Diogo Casal, Diogo Pais, and José Paulo Santos. "{Energy dispersive X-ray fluorescence quantitative analysis of biological samples with the external standard method}." Spectrochimica Acta Part B: Atomic Spectroscopy. 174 (2020): 105991. AbstractWebsite
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Martins, Jorge, Asal Kiazadeh, Joana V. Pinto, Ana Rovisco, Tiago Gonçalves, Jonas Deuermeier, Eduardo Alves, Rodrigo Martins, Elvira Fortunato, and Pedro Barquinha. "{Ta2O5/SiO2 Multicomponent Dielectrics for Amorphous Oxide TFTs}." Electronic Materials. 2 (2020): 1-16. AbstractWebsite

Co-sputtering of SiO2 and high-$ąppa$ Ta2O5 was used to make multicomponent gate dielectric stacks for In-Ga-Zn-O thin-film transistors (IGZO TFTs) under an overall low thermal budget (T = 150 °C). Characterization of the multicomponent layers and of the TFTs working characteristics (employing them) was performed in terms of static performance, reliability, and stability to understand the role of the incorporation of the high-$ąppa$ material in the gate dielectric stack. It is shown that inherent disadvantages of the high-$ąppa$ material, such as poorer interface properties and poor gate insulation, can be counterbalanced by inclusion of SiO2 both mixed with Ta2O5 and as thin interfacial layers. A stack comprising a (Ta2O5)x(SiO2)100 − x film with x = 69 and a thin SiO2 film at the interface with IGZO resulted in the best performing TFTs, with field-effect mobility (µFE) ≈ 16 cm2·V−1·s−1, subthreshold slope (SS) ≈ 0.15 V/dec and on/off ratio exceeding 107. Anomalous Vth shifts were observed during positive gate bias stress (PGBS), followed by very slow recoveries (time constant exceeding 8 × 105 s), and analysis of the stress and recovery processes for the different gate dielectric stacks showed that the relevant mechanism is not dominated by the interfaces but seems to be related to the migration of charged species in the dielectric. The incorporation of additional SiO2 layers into the gate dielectric stack is shown to effectively counterbalance this anomalous shift. This multilayered gate dielectric stack approach is in line with both the large area and the flexible electronics needs, yielding reliable devices with performance suitable for successful integration on new electronic applications.

Rovisco, Ana, Andreia dos Santos, Tobias Cramer, Jorge Martins, Rita Branquinho, Hugo Águas, Beatrice Fraboni, Elvira Fortunato, Rodrigo Martins, Rui Igreja, and Pedro Barquinha. "{Piezoelectricity Enhancement of Nanogenerators Based on PDMS and ZnSnO 3 Nanowires through Microstructuration}." ACS Applied Materials & Interfaces. 12 (2020): 18421-18430. AbstractWebsite

The current trend for smart, self-sustainable, and multifunctional technology demands for the development of energy harvesters based on widely available and environmentally friendly materials. In this context, ZnSnO3 nanostructures show promising potential because of their high polarization, which can be explored in piezoelectric devices. Nevertheless, a pure phase of ZnSnO3 is hard to achieve because of its metastability, and obtaining it in the form of nanowires is even more challenging. Although some groups have already reported the mixing of ZnSnO3 nanostructures with polydimethylsiloxane (PDMS) to produce a nanogenerator, the resultant polymeric film is usually flat and does not take advantage of an enhanced piezoelectric contribution achieved through its microstructuration. Herein, a microstructured composite of nanowires synthesized by a seed-layer free hydrothermal route mixed with PDMS (ZnSnO3@PDMS) is proposed to produce nanogenerators. PFM measurements show a clear enhancement of d33 for single ZnSnO3 versus ZnO nanowires (23 ± 4 pm/V vs 9 ± 2 pm/V). The microstructuration introduced herein results in an enhancement of the piezoelectric effect of the ZnSnO3 nanowires, enabling nanogenerators with an output voltage, current, and instantaneous power density of 120 V, 13 $μ$A, and 230 $μ$W·cm-2, respectively. Even using an active area smaller than 1 cm2, the performance of this nanogenerator enables lighting up multiple LEDs and other small electronic devices, thus proving great potential for wearables and portable electronics.

Couto, Paula, Fernando Pinho, Maria João Falcão Silva, and Frederico Mesquita. "Contributos para o CICS Português: tabelas de formas de informação e da gestão e direção de projeto." CIRMARE 2020 - V Congresso Internacional “Recuperação, Manutenção e Reabilitação de Edifícios”. Online & Universidade Federal do Rio de Janeiro 2020.
Couto, Paula, Maria João Falcão Silva, and Fernando Pinho. "Enquadramento para a definição de um CICS para Portugal." CIRMARE 2020 - V Congresso Internacional “Recuperação, Manutenção e Reabilitação de Edifícios”. Online & Universidade Federal do Rio de Janeiro 2020.
Couto, Paula, Maria João Falcão Silva, Fernando Pinho, and João Barcelos. "Reabilitação de edifícios públicos qualificados baseada em análise multicritério." CIRMARE 2020 - V Congresso Internacional “Recuperação, Manutenção e Reabilitação de Edifícios”. Online & Universidade Federal do Rio de Janeiro 2020.
Silva, Maria João Falcão, Paula Couto, Fernando Pinho, and Sara Silva. "Reabilitação energética de edifícios baseada na metodologia BIM." CIRMARE 2020 - V Congresso Internacional “Recuperação, Manutenção e Reabilitação de Edifícios”. Online & Universidade Federal do Rio de Janeiro 2020.
Couto, Paula, Maria João Falcão Silva, Manuel Baião, Fernando Pinho, and Tiago Neto. "Tecnologia e custos em obras de reabilitação de edifícios escolares." CIRMARE 2020 - V Congresso Internacional “Recuperação, Manutenção e Reabilitação de Edifícios”. Online & Universidade Federal do Rio de Janeiro 2020.
Brandao Moniz, António Teletrabalho em tempos de pandemia. esquerda.net., 2020. Abstract

Será que esta pandemia está a dar velocidade à transição digital, nomeadamente com o teletrabalho? Ou será que, apesar do confinamento durante cerca de 3 meses, o recurso ao teletrabalho foi feito sem grande regulamentação, cuidado ou negociação?

Dinis, Duarte, Ângelo Palos Teixeira, and Ana Barbosa-Póvoa. "ForeSim-BI: A predictive analytics decision support tool for capacity planning." Decision Support Systems. 131 (2020): 113266. AbstractWebsite
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Silva, Maria João Falcão, Paula Couto, and Fernando Pinho. "Inspeção e diagnóstico na reabilitação de edifícios: Intervenção num edifício público." ENCORE2020 - 4º Encontro sobre Conservação e Reabilitação de Edifícios. ISBN 978-972-49-2313-0. LNEC. Lisboa 2020.
Silva, Maria João Falcão, Paula Couto, and Fernando Pinho. "Laser Scanning no apoio à reabilitação funcional de um edifício." ENCORE2020 - 4º Encontro sobre Conservação e Reabilitação de Edifícios. ISBN 978-972-49-2313-0. LNEC. Lisboa 2020.