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2009
Rivas, M. G., M. S. P. Carepo, C. S. Mota, M. Korbas, M. C. Durand, A. T. Lopes, CD Brondino, AS Pereira, GN George, A. Dolla, JJG Moura, and I. Moura. "Molybdenum Induces the Expression of a Protein Containing a New Heterometallic Mo-Fe Cluster in Desulfovibrio alaskensis." Biochemistry. 48 (2009): 873-882. AbstractWebsite

The characterization of a novel Mo-Fe protein (MorP) associated with a system that responds to Mo in Desulfovibrio alaskensis is reported. Biochemical characterization shows that MorP is a periplasmic homomultimer of high molecular weight (260 +/- 13 kDa) consisting of 16-18 monomers of 15321.1 +/- 0.5 Da. The UV/visible absorption spectrum of the as-isolated protein shows absorption peaks around 280, 320, and 570 nm with extinction coefficients of 18700, 12800, and 5000 M(-1) cm(-1), respectively. Metal content, EXAFS data and DFT calculations support the presence of a Mo-2S-[2Fe-2S]-2S-Mo cluster never reported before. Analysis of the available genomes from Desulfovibrio species shows that the MorP encoding gene is located downstream of a sensor and a regulator gene. This type of gene arrangement, called two component system, is used by the cell to regulate diverse physiological processes in response to changes in environmemtal conditions. Increase of both gene expression and protein production was observed when cells were cultured in the presence of 45 mu M molybdenum. Involvement of this system in Mo tolerance of sulfate reducing bacteria is proposed.

Silva, M., H. Machado, and AJL Phillips. "Mycosphaerella species occurring on Eucalyptus globulus in Portugal." European Journal of Plant Pathology. 125 (2009): 425-433. Abstract
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2008
Viegas, Aldino, Natercia F. Bras, Nuno M. F. S. A. Cerqueira, Pedro Alexandrino Fernandes, Jose A. M. Prates, Carlos M. G. A. Fontes, Marta Bruix, Maria Joao Romao, Ana Luisa Carvalho, Maria Joao Ramos, Anjos L. Macedo, and Eurico J. Cabrita. "Molecular determinants of ligand specificity in family 11 carbohydrate binding modules - an NMR, X-ray crystallography and computational chemistry approach." Febs Journal. 275 (2008): 2524-2535. Abstract
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Duarte, Filipe J. S., Eurico J. Cabrita, Gernot Frenking, and Gil Santos. "Mechanistic study of intramolecular aldol reactions of dialdehydes." European Journal of Organic Chemistry (2008): 3397-3402. Abstract
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Silva, R. J. C., E. Figueiredo, M. F. Araújo, F. Pereira, and FMB Fernandes. "Microstructure interpretation of copper and bronze archaeological artefacts from Portugal." Materials Science Forum. 587-588 (2008): 365-369. AbstractWebsite
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M. Alferez, U. Kulesza, A. Sousa, J. Santos, A. Moreira, J. Araújo, and Vasco Amaral. "A Model-Driven Approach for Software Product Lines Requirements Engineering." Proceedings of the 20th International Conference on Software Engineering and Knowledge Engineering. Knowledge Systems Institute Graduate School, 2008. Abstract

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Araujo, R., R. Castanhinha, and O. Mateus. "Major trends in the evolution of teeth and mandibles in ornithopod dinosaurs." Livro de Resumos de Tercer Congreso Latinoamericano de Paleontología de Vertebrados. Neuquén, Argentina 2008. 18. Abstractaraujo_et_al._2008._major_trends_in_the_evolution_of_teeth_and_mandibles_in_ornithopod_dinosaurs.pdf

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S. Agostinho, A. Moreira, A. Marques, J. Araújo, I. S. Brito, R. Ferreira, and R. Raminhos. "A Metadata Driven Approach for Aspect-Oriented Requirements Analysis." 10th International Conference on Enterprise Information Systems (ICEIS 2008). ICEIS, 2008. Abstract

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Amado, M. P., A. J. Pinto, and C. V. Santos Methods in sustainable urban process. Sustainable Construction – Materials and Practices. Lisboa Portugal: IOS Press BV, ISBN: 978-1-58603-785-7, 2008.
Caeiro, Frederico, and M.Ivette Gomes. "Minimum-variance reduced-bias tail index and high quantile estimation." REVSTAT. 6 (2008): 1-20. Abstract

{Summary: Heavy tailed-models are quite useful in many fields, like insurance, finance, telecommunications, internet traffic, among others, and it is often necessary to estimate a high quantile, i.e., a value that is exceeded with a probability $p$, small. The semiparametric estimation of this parameter relies essentially on the estimation of the tail index, the primary parameter in statistics of extremes. Classical semi-parametric estimators of extreme parameters show usually a severe bias and are known to be very sensitive to the number $k$ of top order statistics used in the estimation. For $k$ small they have a high variance, and for large $k$ a high bias. Recently, new second-order ``shape'' and ``scale'' estimators allowed the development of second-order reduced-bias estimators, which are much less sensitive to the choice of $k$. Here we study, under a third order framework, minimum-variance reduced-bias (MVRB) tail index estimators, recently introduced in the literature, and dependent on an adequate estimation of second order parameters. The improvement comes from the asymptotic variance, which is kept equal to the asymptotic variance of the classical Hill estimator [ıt B. Hill}, Ann. Stat. 3, 1163–1174 (1975; Zbl 0323.62033)] provided that we estimate the second order parameters at a level of a larger order than the level used for the estimation of the first order parameter. The use of those MVRB tail index estimators enables us to introduce new classes of reduced-bias high quantile estimators. These new classes are compared among themselves and with previous ones through the use of a small-scale Monte Carlo simulation.}

A. Sousa, U. Kulesza, A. Rummler, N. Arquentil, R. Mitschke, A. Moreira, Vasco Amaral, and J. Araújo. "A Model-Driven Traceability Framework to Software Product Line Development." ECMDA Traceability Workshop ECMDA-TW ( 2008 Proceedings). Ed. Tor Neple Richard Paige Jon Oldvic, Goran olsen. SINTEF ICT, 2008. Abstract

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G. Mussbacher, D. Amyot, J. Araújo, and A. Moreira. "Modeling software product lines with AoURN." Proceedings of the 2008 AOSD workshop on Early aspects. ACM Electronic Library, 2008. Abstract

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Bras, A. R., J. P. Noronha, A. M. M. Antunes, M. M. Cardoso, A. Schoenhals, F. Affouard, M. Dionisio, and N. T. Correia. "Molecular Motions in Amorphous Ibuprofen As Studied by Broadband Dielectric Spectroscopy." J. Phys. Chem. B. 112 (2008): 11087-11099.
A. Marques, A. Moreira, and J. Araújo. "Multi-Dimensional Composition by Objective in Aspect-Oriented Requirements Analysis." Workshop on Early Aspects at the 30th International Conference on Software Engineering (ICSE'08). IEEE Computer Society, 2008. Abstract

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Araujo, R., R. Castanhinha, and O. Mateus. "Major trends in the evolution of teeth and mandibles in ornithopod dinosaurs." Livro de Resumos de Tercer Congreso Latinoamericano de Paleontología de Vertebrados. Neuquén, Argentina 2008. 18. Abstract
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Araujo, R., R. Castanhinha, and O. Mateus. "Major trends in the evolution of teeth and mandibles in ornithopod dinosaurs." Livro de Resumos de Tercer Congreso Latinoamericano de Paleontología de Vertebrados. Neuquén, Argentina 2008. 18. Abstract
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Palma, Angelina S., Yan Liu, Maria A. Campanero-Rhodes, Robert A. Childs, Mark S. Stoll, Thomas Schallus, Claudia Muhle-Goll, Mukram Mackeen, Wengang Chai, and Ten Feizi. "Malectin-a Novel Lectin of the Endoplasmic Reticulum and a Candidate New Player in the Early Steps Of Protein N-Glycosylation." Glycobiology. 18 (2008): 948-949. Abstract
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Schallus, Thomas, Christine Jaeckh, Krisztina Feher, Angelina S. Palma, Yan Liu, Jeremy C. Simpson, Mukram Mackeen, Gunter Stier, Toby J. Gibson, Ten Feizi, Tomas Pieler, and Claudia Muhle-Goll. "Malectin: A novel carbohydrate-binding protein of the endoplasmic reticulum and a candidate player in the early steps of protein N-glycosylation." Molecular Biology of the Cell. 19 (2008): 3404-3414. Abstract
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Pais, Tiago Cardal, and Paula Amaral. "Managing the tabu list length using a fuzzy inference system: an application to exams timetabling." The 7th International Conference for the Practice and Theory of Automated Timetabling. 2008. 1-6. Abstract
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Oliveira, L. B., J. R. Fernandes, I. M. Filanovsky, C. J. M. Verhoeven, and M. M. Silva. "Measurement Results." Analysis and Design of Quadrature Oscillators (2008): 119-135. Abstract
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Monteiro, R. C. C., M. M. R. A. Lima, and S. Alves. "Mechanical characteristics of clay structural ceramics containing coal fly ash." International Journal of Mechanics and Materials in Design. 4 (2008): 213-220. AbstractWebsite

In this work, the mechanical characterization of ceramic products processed from red clay with different amounts of added coal fly ash was investigated. Coal fly ash produced by power plants is a waste material that constitutes an alternative source of minerals for the production of traditional building ceramics, as it is a complex mixture of several oxides such as SiO2, Al2O3, CaO, Fe2O3, Na2O, TiO2, which are usually present in the composition of such ceramics. A powder technology and firing route was followed for the processing of the clay and coal fly ash based ceramics. Different proportions of waste (10, 25 and 50%, by weight) were added to red clay, and then the mixed powders were pressed to form compacts that were fired at a selected temperature in the range 850-1,150°C. The effects of waste content and of heating conditions on the microstructure and mechanical characteristics of the obtained materials were investigated. The density, porosity, water absorption, flexural strength, hardness and fracture toughness of the produced materials were evaluated. A comparison was made between the properties of the produced ceramics with those of traditional ceramic materials used in construction, e.g. floor or wall tiles, and it was observed that the clay based products with coal fly ash additions may be used in similar applications. © 2007 Springer Science+Business Media B.V.

Monteiro, R. C. C., M. M. R. A. Lima, and S. Alves. "Mechanical characteristics of clay structural ceramics containing coal fly ash." International Journal of Mechanics and Materials in Design. 4 (2008): 213-220. Abstract
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Pereira, L.a, Águas Beckers Martins Fortunato Martins H. a M. b. "Metal contamination detection in nickel induced crystallized silicon by spectroscopic ellipsometry." Journal of Non-Crystalline Solids. 354 (2008): 2319-2323. AbstractWebsite

In this paper a new approach is presented for the simulation of spectroscopic ellipsometry (SE) data to estimate the level of nickel (Ni) contamination in silicon crystallized by metal induced crystallization (MIC). The method employs the addition of Ni as reference for a Bruggemann effective medium approximation (BEMA) to simulate the optical response of the crystallized silicon. This new approach is sensitive to changes in the initial average metal thickness used on the crystallization process to thickness values as low as 0.05 nm. This corresponds to a volume fraction of 0.24%, confirmed by Rutherford backscattering spectrometry (RBS) where it was observed that the Ni volume fraction detected by SE varies linearly with the metal amount inside the crystallized films determined by RBS. © 2008.

Pereira, L., H. Águas, M. Beckers, R. M. S. Martins, E. Fortunato, and R. Martins. "Metal contamination detection in nickel induced crystallized silicon by spectroscopic ellipsometry." Journal of Non-Crystalline Solids. 354 (2008): 2319-2323. Abstract
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