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2009
Moura, J., L. Krippahl, S. Pauleta, R. Almeida, and S. Del Acqua. "Molecular interactions/electron transfer protein complexes using Docking algorithms, spectroscopy (NMR) and site direct mutagenesis." Febs Journal. 276 (2009): 11. AbstractWebsite
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Barbosa, Paulo E. S., Anikó Costa, Jorge Figueiredo, Franklin Ramalho, Lu\'ıs Gomes, and Antônio Junior. "Modeling Complex Petri Nets Operations in the Model-Driven Architecture." IECON'2009 - 35th Annual Conference of the IEEE Industrial Electronics Society. Alfandega Congress Center, Porto, Portugal 2009. Abstract
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M. Alferez, J. Santos, A. Moreira, A. Garcia, U. Kulesza, J. Araújo, and V. Amaral. "Multi-View Composition Language for Software Product Line Requirements." Proceedings of the 2nd International Conference on Software Language Engineering. Eds. Dragan Ga Mark van den Brand, and Jeff Gray. Springer-Verlag, 2009. 103-122. Abstract

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M. Alferez, Vasco Amaral, J. Araújo, and J. Santos MDD Approach for Requirements Refinement to Architecture. Lancaster University, 2009. Abstract

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J. Whittle, P. K. Jayaraman, A. M. Elkhodary, A. Moreira, and J. Araújo. "MATA: A Unified Approach for Composing UML Aspect Models Based on Graph Transformation." Transactions on Aspect Oriented Software Development (TAOSD). 5560 (2009). Abstract

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A. Brogi, J. Araújo, and R. Anaya Memorias de la XII Conferencia Iberoamericana de Software Engineering (CIbSE 2009). Eds. J. Ara. CIbSE2009, 2009. Abstract

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P. Sanchez, A. Moreira, L. Fuentes, J. Araújo, and J. M. Lopes. "Model-Driven Development for Early Aspects." Information of Software and Technology. 52.3 (2009): 249-273. Abstract

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A. Oliveira, M. Urbieta, J. Araújo, A. Rodrigues, A. Moreira, S. Gordillo, and G. Rossi. "Modeling Location-Aware Behaviour in Web-GIS Using Aspects." ICEIS 2009. ICEIS, 2009. Abstract

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Ramos, Tania Rodrigues Pereira, Maria Isabel Gomes-Salema, and Ana Paula Barbosa-povoa. "A multi-product, multi-depot vehicle routing problem in a reverse logistics system: comparative study of an exact formulation and a heuristic algorithm." Livro de actas da 14º congresso da APDIO, IO2009. 2009. 195-202.
Silva, V., J. Fernandes, L. B. Oliveira, M. Véstias, and H. Neto. "Magnetic RAM Reconfigurable Array." (2009). Abstract
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Xavier, J., M. Oliveira, J. Morais, and J. Pinto. "Measurement of the shear properties of clear wood by the Arcan test." Holzforschung. 63 (2009): 217-225. Abstract
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Rivas, M. G., M. S. P. Carepo, C. S. Mota, M. Korbas, M. C. Durand, A. T. Lopes, CD Brondino, AS Pereira, GN George, A. Dolla, JJG Moura, and I. Moura. "Molybdenum Induces the Expression of a Protein Containing a New Heterometallic Mo-Fe Cluster in Desulfovibrio alaskensis." Biochemistry. 48 (2009): 873-882. AbstractWebsite

The characterization of a novel Mo-Fe protein (MorP) associated with a system that responds to Mo in Desulfovibrio alaskensis is reported. Biochemical characterization shows that MorP is a periplasmic homomultimer of high molecular weight (260 +/- 13 kDa) consisting of 16-18 monomers of 15321.1 +/- 0.5 Da. The UV/visible absorption spectrum of the as-isolated protein shows absorption peaks around 280, 320, and 570 nm with extinction coefficients of 18700, 12800, and 5000 M(-1) cm(-1), respectively. Metal content, EXAFS data and DFT calculations support the presence of a Mo-2S-[2Fe-2S]-2S-Mo cluster never reported before. Analysis of the available genomes from Desulfovibrio species shows that the MorP encoding gene is located downstream of a sensor and a regulator gene. This type of gene arrangement, called two component system, is used by the cell to regulate diverse physiological processes in response to changes in environmemtal conditions. Increase of both gene expression and protein production was observed when cells were cultured in the presence of 45 mu M molybdenum. Involvement of this system in Mo tolerance of sulfate reducing bacteria is proposed.

Silva, M., H. Machado, and AJL Phillips. "Mycosphaerella species occurring on Eucalyptus globulus in Portugal." European Journal of Plant Pathology. 125 (2009): 425-433. Abstract
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2008
Viegas, Aldino, Natercia F. Bras, Nuno M. F. S. A. Cerqueira, Pedro Alexandrino Fernandes, Jose A. M. Prates, Carlos M. G. A. Fontes, Marta Bruix, Maria Joao Romao, Ana Luisa Carvalho, Maria Joao Ramos, Anjos L. Macedo, and Eurico J. Cabrita. "Molecular determinants of ligand specificity in family 11 carbohydrate binding modules - an NMR, X-ray crystallography and computational chemistry approach." Febs Journal. 275 (2008): 2524-2535. Abstract
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Duarte, Filipe J. S., Eurico J. Cabrita, Gernot Frenking, and Gil Santos. "Mechanistic study of intramolecular aldol reactions of dialdehydes." European Journal of Organic Chemistry (2008): 3397-3402. Abstract
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Silva, R. J. C., E. Figueiredo, M. F. Araújo, F. Pereira, and FMB Fernandes. "Microstructure interpretation of copper and bronze archaeological artefacts from Portugal." Materials Science Forum. 587-588 (2008): 365-369. AbstractWebsite
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M. Alferez, U. Kulesza, A. Sousa, J. Santos, A. Moreira, J. Araújo, and Vasco Amaral. "A Model-Driven Approach for Software Product Lines Requirements Engineering." Proceedings of the 20th International Conference on Software Engineering and Knowledge Engineering. Knowledge Systems Institute Graduate School, 2008. Abstract

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Araujo, R., R. Castanhinha, and O. Mateus. "Major trends in the evolution of teeth and mandibles in ornithopod dinosaurs." Livro de Resumos de Tercer Congreso Latinoamericano de Paleontología de Vertebrados. Neuquén, Argentina 2008. 18. Abstractaraujo_et_al._2008._major_trends_in_the_evolution_of_teeth_and_mandibles_in_ornithopod_dinosaurs.pdf

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S. Agostinho, A. Moreira, A. Marques, J. Araújo, I. S. Brito, R. Ferreira, and R. Raminhos. "A Metadata Driven Approach for Aspect-Oriented Requirements Analysis." 10th International Conference on Enterprise Information Systems (ICEIS 2008). ICEIS, 2008. Abstract

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Amado, M. P., A. J. Pinto, and C. V. Santos Methods in sustainable urban process. Sustainable Construction – Materials and Practices. Lisboa Portugal: IOS Press BV, ISBN: 978-1-58603-785-7, 2008.
Caeiro, Frederico, and M.Ivette Gomes. "Minimum-variance reduced-bias tail index and high quantile estimation." REVSTAT. 6 (2008): 1-20. Abstract

{Summary: Heavy tailed-models are quite useful in many fields, like insurance, finance, telecommunications, internet traffic, among others, and it is often necessary to estimate a high quantile, i.e., a value that is exceeded with a probability $p$, small. The semiparametric estimation of this parameter relies essentially on the estimation of the tail index, the primary parameter in statistics of extremes. Classical semi-parametric estimators of extreme parameters show usually a severe bias and are known to be very sensitive to the number $k$ of top order statistics used in the estimation. For $k$ small they have a high variance, and for large $k$ a high bias. Recently, new second-order ``shape'' and ``scale'' estimators allowed the development of second-order reduced-bias estimators, which are much less sensitive to the choice of $k$. Here we study, under a third order framework, minimum-variance reduced-bias (MVRB) tail index estimators, recently introduced in the literature, and dependent on an adequate estimation of second order parameters. The improvement comes from the asymptotic variance, which is kept equal to the asymptotic variance of the classical Hill estimator [ıt B. Hill}, Ann. Stat. 3, 1163–1174 (1975; Zbl 0323.62033)] provided that we estimate the second order parameters at a level of a larger order than the level used for the estimation of the first order parameter. The use of those MVRB tail index estimators enables us to introduce new classes of reduced-bias high quantile estimators. These new classes are compared among themselves and with previous ones through the use of a small-scale Monte Carlo simulation.}

A. Sousa, U. Kulesza, A. Rummler, N. Arquentil, R. Mitschke, A. Moreira, Vasco Amaral, and J. Araújo. "A Model-Driven Traceability Framework to Software Product Line Development." ECMDA Traceability Workshop ECMDA-TW ( 2008 Proceedings). Ed. Tor Neple Richard Paige Jon Oldvic, Goran olsen. SINTEF ICT, 2008. Abstract

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G. Mussbacher, D. Amyot, J. Araújo, and A. Moreira. "Modeling software product lines with AoURN." Proceedings of the 2008 AOSD workshop on Early aspects. ACM Electronic Library, 2008. Abstract

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Bras, A. R., J. P. Noronha, A. M. M. Antunes, M. M. Cardoso, A. Schoenhals, F. Affouard, M. Dionisio, and N. T. Correia. "Molecular Motions in Amorphous Ibuprofen As Studied by Broadband Dielectric Spectroscopy." J. Phys. Chem. B. 112 (2008): 11087-11099.