Correia, Cristina, Stephane Besson, Carlos D. Brondino, Pablo J. Gonzalez, Guy Fauque, Jorge Lampreia, Isabel Moura, and Jose J. G. Moura. "
Biochemical and spectroscopic characterization of the membrane-bound nitrate reductase from Marinobacter hydrocarbonoclasticus 617."
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY. 13 (2008): 1321-1333.
AbstractMembrane-bound nitrate reductase from Marinobacter hydrocarbonoclasticus 617 can be solubilized in either of two ways that will ultimately determine the presence or absence of the small (I) subunit. The enzyme complex (NarGHI) is composed of three subunits with molecular masses of 130, 65, and 20 kDa. This enzyme contains approximately 14 Fe, 0.8 Mo, and 1.3 molybdopterin guanine dinucleotides per enzyme molecule. Curiously, one heme b and 0.4 heme c per enzyme molecule have been detected. These hemes were potentiometrically characterized by optical spectroscopy at pH 7.6 and two noninteracting species were identified with respective midpoint potentials at E(m) = + 197 mV (heme c) and-4.5 mV (heme b). Variable-temperature (4-120 K) X-band electron paramagnetic resonance (EPR) studies performed on both as-isolated and dithionite-reduced nitrate reductase showed, respectively, an EPR signal characteristic of a {[}3Fe-4S](+) cluster and overlapping signals associated with at least three types of {[}4Fe-4S](+) centers. EPR of the as-isolated enzyme shows two distinct pH-dependent Mo(V) signals with hyperfine coupling to a solvent-exchangeable proton. These signals, called ``lowpH'' and ``high-pH,'' changed to a pH-independent Mo(V) signal upon nitrate or nitrite addition. Nitrate addition to dithionite-reduced samples at pH 6 and 7.6 yields some of the EPR signals described above and a new rhombic signal that has no hyperfine structure. The relationship between the distinct EPR-active Mo(V) species and their plausible structures is discussed on the basis of the structural information available to date for closely related membrane-bound nitrate reductases.
Preguiça, Nuno, Rodrigo Rodrigues, Cristóvão Honorato, and João M. Lourenço. "
Byzantium: Byzantine-fault-tolerant database replication providing snapshot isolation."
Proceedings of the Fourth conference on Hot topics in system dependability. {HotDep}'08. Berkeley, CA, USA: USENIX Association, 2008. 9.
AbstractDatabase systems are a key component behind many of today's computer systems. As a consequence, it is crucial that database systems provide correct and continuous service despite unpredictable circumstances, such as software bugs or attacks. This paper presents the design of Byzantium, a Byzantine fault-tolerant database replication middleware that provides snapshot isolation (SI) semantics. SI is very popular because it allows increased concurrency when compared to serializability, while providing similar behavior for typical workloads. Thus, Byzantium improves on existing proposals by allowing increased concurrency and not relying on any centralized component. Our middleware can be used with off-the-shelf database systems and it is built on top of an existing BFT library.