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Submitted
Torres, Cristiana A. V., Rodolfo Marques, Silvia Antunes, Vitor D. Alves, Isabel Sousa, Ana Maria Ramos, Rui Oliveira, Filomena Freitas, and Maria A. M. Reis. "{Kinetics of production and characterization of the fucose-containing exopolysaccharide from Enterobacter A47}." {JOURNAL OF BIOTECHNOLOGY}. {156} (Submitted): {261-267}. Abstract
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Teixeira, Ana P., Nuno Carinhas, Jodo M. L. Dias, Pedro Cruz, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Hybrid semi-parametric mathematical systems: Bridging the gap between systems biology and process engineering}." {JOURNAL OF BIOTECHNOLOGY}. {132} (Submitted): {418-425}. Abstract
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Teixeira, A., A. E. Cunha, J. J. Clemente, JL Moreira, HJ Cruz, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Modelling and optimization of a recombinant BHK-21 cultivation process using hybrid grey-box systems}." {JOURNAL OF BIOTECHNOLOGY}. {118} (Submitted): {290-303}. Abstract
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Goerke, Aaron R., Johannes Scholten, Nedim Emil Altaras, Ana Teixeira, Joao Clemente, Antonio Cunha, Rui Oliveira, and John G. Aunins. "{BIOT 328-Fast development of Pichia pastoris cultures based on hybrid semiparametric process control}." {ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY}. {236} (Submitted). Abstract
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Matsui, Midori, Masamitsu Hoshino, Hidetoshi Kato, Fillipe Ferreira da Silva, Paulo Limao-Vieira, and Hiroshi Tanaka. "{Measuring electron-impact cross sections of water: elastic scattering and electronic excitation of the (a)over-tilde(3)B(1) and (A)over-tilde(1)B(1) states}." {EUROPEAN PHYSICAL JOURNAL D}. {70} (Submitted). Abstract
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Alves, Vitor D., Filomena Freitas, Cristiana A. V. Torres, Madalena Cruz, Rodolfo Marques, Christian Grandfils, M. P. Goncalves, Rui Oliveira, and Maria A. M. Reis. "{Rheological and morphological characterization of the culture broth during exopolysaccharide production by Enterobacter sp. (vol 80, pg 325, 2010)}." {CARBOHYDRATE POLYMERS}. {80} (Submitted): {325}. Abstract
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Dias, J. P., F. Oliveira, and H. Tavares. "On a coupled system of a Ginzburg-Landau equation with a quasilinear conservation law." (Submitted).
Isidro, Ines A., Ana R. Ferreira, Joao J. Clemente, Antonio E. Cunha, Joao M. L. Dias, and Rui Oliveira. "{Design of Pathway-Level Bioprocess Monitoring and Control Strategies Supported by Metabolic Networks}." {MEASUREMENT, MONITORING, MODELLING AND CONTROL OF BIOPROCESSES}. Eds. CF {Mandenius, and NJ} TitchenerHooker. Vol. {132}. {Advances in Biochemical Engineering-Biotechnology}, {132}. Submitted. {193-215}. Abstract
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Teixeira, A., A. Cunha, J. Clemente, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Dynamic modelling and optimisation of a mammalian cells process using hybrid grey-box systems}." {Adaptive and Natural Computing Algorithms}. Eds. B. {Ribeiro, RF Albrecht, A. Dobnikar, DW Pearson, and NC} Steele. {SPRINGER COMPUTER SCIENCE}. Submitted. {296-299}. Abstract
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Puschnigg, Benjamin, Stefan E. Huber, Michael Probst, Katrin Tanzer, Violaine Vizcaino, Filipe Ferreira da Silva, Paul Scheier, Paulo Limao-Vieira, and Stephan Denifl. "{Electron attachment to the dipeptide dialanine: influence of methylation on site selective dissociation reactions}." {PHYSICAL CHEMISTRY CHEMICAL PHYSICS}. {15} (Submitted): {3834-3840}. Abstract
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Teixeira, A., C. Alves, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Hybrid metabolic flux analysis/artificial neural network modeling of bioprocesses}." {HIS 2005: 5th International Conference on Hybrid Intelligent Systems, Proceedings}. Eds. N. {Nedjah, LM Mourelle, MMB Vellasco, A. Abraham, and M. } Koppen. {Operador Nacl Sistema Eletr; Coordenac Aperfeicoament Pessoal Nivel Super; Brazilian Comp Soc; Brazilian Soc Automat; IEEE Syst Man & Cygernet Soc; Int Fuzzy Syst Assoc; European Neural Network Soc; European Soc Fuzzy Log & Technol; World Federat Soft Co, Submitted. {411-416}. Abstract
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Teixeira, A., C. M. L. Alves, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Hybrid metabolic flux analysis/data-driven modelling of bioprocesses}." {16TH EUROPEAN SYMPOSIUM ON COMPUTER AIDED PROCESS ENGINEERING AND 9TH INTERNATIONAL SYMPOSIUM ON PROCESS SYSTEMS ENGINEERING}. Eds. W. {Marquardt, and C. } Pantelides. Vol. {21}. {Computer-Aided Chemical Engineering}, {21}. Submitted. {1667-1672}. Abstract
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Blanco, F., A. Munoz, D. Almeida, F. Ferreira da Silva, P. Limao-Vieira, A. Verkhovtsev, L. Ellis-Gibbings, K. Krupa, A. Traore, and G. Garcia. "{Modeling secondary particle tracks generated by high-energy protons in water}." {XXIX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2015), PTS 1-12}. Eds. C. {Diaz, I. Rabadan, G. Garcia, L. Mendez, and F. } Martin. Vol. {635}. {Journal of Physics Conference Series}, {635}. Submitted. Abstract
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Ferreira da Silva, F., R. Thorman, H. Lu, L. McElwee-White, and O. Ingolfsson. "{Pt(CO)(2)Cl-2 fragmentation upon low energy electron interactions}." {XXX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2017)}. Eds. A. {Bray, S. Hodgman, J. Machacek, and A. } Kheifets. Vol. {875}. {Journal of Physics Conference Series}, {875}. Submitted. Abstract
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In Press
Karlovych, Oleksiy, and Sandra Mary Thampi. "On multiplier analogues of the algebra C+H^\infty on weighted rearrangement-invariant sequence spaces." Journal of Approximation Theory (In Press).
Teixeira, P., H. Rocha, and C. Martins. "Teachers' perceptions of teaching practices, the STEAM approach, and collaborative work." Springer, In Press.
2025
Conca, Dario Valter, Fouzia Bano, Małgorzata Graul, Julius von Wirén, Lauriane Scherrer, Hudson Pace, Justas Svirelis, Konrad Thorsteinsson, Andreas Dahlin, and Marta Bally. "Variant-Specific Interactions at the Plasma Membrane: Heparan Sulfate’s Impact on SARS-CoV-2 Binding Kinetics." Analytical Chemistry (2025). AbstractWebsite
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Teixeira, P., H. Rocha, and C. Martins. "Challenges and potential in implementing STE(A)M in teachers' practices: a systematic review." International Journal of Mathematical Education in Science and Technology (2025).Website
Jiangzuo, Qigao, Joan Madurell-Malapeira, Xinhai Li, Darío Estraviz-López, Octávio Mateus, Agnès Testu, Shijie Li, Shiqi Wang, and Tao Deng. "Insights on the evolution and adaptation toward high-altitude and cold environments in the snow leopard lineage." Science Advances. 11 (2025): eadp5243. AbstractWebsite

How snow leopard gradually adapted to the extreme environments in Tibet remains unexplored due to the scanty fossil record in Tibet. Here, we recognize five valid outside-Tibet records of the snow leopard lineage. Our results suggest that the snow leopard dispersed out of the Tibetan Plateau multiple times during the Quaternary. The osteological anatomy of the modern snow leopard shows adaptation to the steep slope and, to a lesser extent, cold/high-altitude environment. Fossils and phylogeny suggest that the snow leopard experienced a gradual strengthening of such adaptation, especially since the Middle Pleistocene ( 0.8 million years). Species distribution modeling suggests that the locations of the fossil sites are not within most suitable area, and we argue that local landscape features are more influential factors than temperature and altitude alone. Our study underscores the importance of integrating morphology, fossil records, and species distribution modeling, to comprehensively understand the evolution, ecology, and inform conservation strategies for endangered species. Integrated morphology, fossil records, and SDM reveal the evolution and adaptation in the snow leopard lineage.

2024
Svedberg, Dennis, Rahel R. Winiger, Alexandra Berg, Himanshu Sharma, Christian Tellgren-Roth, Bettina A. Debrunner-Vossbrinck, Charles R. Vossbrinck, and Jonas Barandun. "Functional annotation of a divergent genome using sequence and structure-based similarity." BMC Genomics. 25 (2024). AbstractWebsite
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Tavares, Catarina, Tânia Vieira, Jorge C. Silva, João PMR Borges, and Carmo M. Lança. "Bioactive Hydroxyapatite Aerogels with Piezoelectric Particles." Biomimetics 2024, Vol. 9, Page 143. 9 (2024): 143. AbstractWebsite

Open-cell foams based on hydroxyapatite (HAp) can mimic the extracellular matrix (ECM) to better replace damaged hard tissues and assist in their regeneration processes. Aerogels of HAp nanowires (NW) with barium titanate (BT) particles were produced and characterized regarding their physical and chemical properties, bioactivity, and in vitro cytotoxicity. Considering the role of piezoelectricity (mainly due to collagen) and surface charges in bone remodeling, all BT particles, of size 280 nm and 2 and 3 µm, contained BaTiO3 in their piezoelectric tetragonal phase. The synthesized nanowires were verified to be AB-type carbonated hydroxyapatite. The aerogels showed high porosity and relatively homogeneous distribution of the BT particles. Barium titanate proved to be non-cytotoxic while all the aerogels produced were cytotoxic for an extract concentration of 1 mg/mL but became non-cytotoxic at concentrations of 0.5 mg/mL and below. It is possible that these results were affected by the higher surface area and quicker dissolution rate of the aerogels. In the bioactivity assays, SEM/EDS, it was not easy to differentiate between the apatite deposition and the surface of the HAp wires. However, a quantitative EDS analysis shows a possible CaP deposition/dissolution cycle taking place.

Shankar, Kasturika, Marie N. Sorin, Himanshu Sharma, Oskar Skoglund, Selma Dahmane, Josy Ter Beek, Solomon Tesfalidet, Louise Nenzén, and Lars-Anders Carlson. "In vitroreconstitution reveals membrane clustering and RNA recruitment by the enteroviral AAA+ ATPase 2C." PLOS Pathogens. 20(8): e10 (2024). AbstractWebsite
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Tavares, Catarina, Tânia Vieira, Jorge C. Silva, João PMR Borges, and Carmo M. Lança. "Bioactive Hydroxyapatite Aerogels with Piezoelectric Particles." 9.3 (2024): 143. Abstract
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Gavinho, Sílvia Rodrigues, Imen Hammami, Suresh Kumar Jakka, Sílvia Soreto Teixeira, Jorge Carvalho Silva, João Paulo Borges, and Manuel Pedro Fernandes Graça. "Influence of the Addition of Zinc, Strontium, or Magnesium Oxides to the Bioglass 45S5 Network on Electrical Behavior." 17.2 (2024): 499. Abstract
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Karlovych, Oleksiy, and Sandra Mary Theampi. "The Brown-Halmos theorem for discrete Wiener-Hopf operators." Advances in Operator Theory. 9 (2024): 69.Website