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1998
Fortunato, Elvira, Alexander Malik, Ana Sêco, Isabel Ferreira, and Rodrigo Martins. "Amorphous silicon sensors: from photo to chemical detection." Journal of non-crystalline solids. 227 (1998): 1349-1353. Abstract
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Santos, J. P., F. Parente, and P. Indelicato. "Application of B-splines finite basis sets to relativistic two-photon decay rates of 2s level in hydrogenic ions." The European Physical Journal D. 3 (1998): 43-52. AbstractWebsite

A theoretical study of the one- and two-photon spontaneous emission rates from the 2 s1/2 state of one-electron ions is presented. High-precision values of the relativistic emission rates for ions with nuclear charge Z up to 100 are obtained through the use of finite basis sets for the Dirac equation constructed from B-splines. Furthermore, we analyze the influence of the inclusion of quantum electrodynamics corrections in the initial and final state energies.

Pereira, AS, W. Small, C. Krebs, P. Tavares, DE Edmondson, E. C. Theil, and BH HUYNH. "Direct spectroscopic and kinetic evidence for the involvement of a peroxodiferric intermediate during the ferroxidase reaction in fast ferritin mineralization." Biochemistry. 37 (1998): 9871-9876. AbstractWebsite

Rapid freeze-quench (RFQ) Mossbauer and stopped-flow absorption spectroscopy were used to monitor the ferritin ferroxidase reaction using recombinant (apo) frog M ferritin; the initial transient ferric species could be trapped by the RFQ method using low iron loading (36 Fe2+/ferritin molecule). Biphasic kinetics of ferroxidation were observed and measured directly by the Mossbauer method; a majority (85%) of the ferrous ions was oxidized at a fast rate of similar to 80 s(-1) and the remainder at a much slower rate of similar to 1.7 s(-1). In parallel with the fast phase oxidation of the Fe2+ ions, a single transient iron species is formed which exhibits magnetic properties (diamagnetic ground state) and Mossbauer parameters (Delta E-Q = 1.08 +/- 0.03 mm/s and delta = 0.62 +/- 0.02 mm/s) indicative of an antiferromagnetically coupled peroxodiferric complex. The formation and decay rates of this transient diiron species measured by the RFQ Mossbauer method match those of a transient blue species (lambda(max) = 650 nm) determined by the stopped-flow absorbance measurement. Thus, the transient colored species is assigned to the same peroxodiferric intermediate. Similar transient colored species have been detected by other investigators in several other fast ferritins (H and M subunit types), such as the human H ferritin and the Escherichia coli ferritin, suggesting a similar mechanism for the ferritin ferroxidase step in all fast ferritins. Peroxodiferric complexes are also formed as early intermediates in the reaction of O-2 With the catalytic diiron centers in the hydroxylase component of soluble methane monooxygenase (MMOH) and in the D84E mutant of the R2 subunit of E. coli ribonucleotide reductase. The proposal that a single protein site, with a structure homologous to the diiron centers in MMOH and R2, is involved in the ferritin ferroxidation step is confirmed by the observed kinetics, spectroscopic properties, and purity of the initial peroxodiferric species formed in the frog M ferritin.

Goulão, Miguel, António Silva Monteiro, José Furtado Martins, Nuno Palmeiro Ribeiro, Alberto Bigotte Almeida, Fernando Brito Abreu, and Pedro Sousa II Relatório de Actividades do Protocolo Marinha Portuguesa / INESC. DAMAG / INESC, 1998. Abstract
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Santos, J. P., J. P. Marques, F. Parente, E. Lindroth, S. Boucard, and P. Indelicato. "Multiconfiguration Dirac-Fock calculation of 2s1/2-2p3/2 transition energies in highly ionized bismuth, thorium, and uranium." The European Physical Journal D. 1 (1998): 149-163. Abstract

Structure and QED effects for 2s1/2 and 2p3/2 levels are calculated for lithiumlike U89+ trough neonlike U82+, lithiumlike Th87+ trough neonlike Th80+ and lithiumlike Bi80+ trough neonlike Bi73+. The results of the first two sets are compared with recent measurements of the 2s1/2-2p3/2 transition energy in 3 to 10-electron ions. Good agreement with experiment is found for most of the observed lines. Forty-one possible transitions are calculated for each ion in the eight ionization states, in the experimental energy range. Twenty-eight of these transitions have not been observed, nor calculated previously. We also calculate transition rates, branching ratios, excitation and ionization cross sections and confirm that the thirteen experimental observed transitions correspond to the ones with highest relative intensities. However, we find nineteen more transitions that could be measured in a more sensitive experiment.X

Goulão, Miguel, António Silva Monteiro, José Furtado Martins, Fernando Brito Abreu, Alberto Bigotte Almeida, and Pedro Sousa. "A Software Evolution Experiment." European Software Control and Metrics Conference (ESCOM'98). Eds. Rob Kusters, Adrian Cowderoy, Fred Heemstra, and Jos Trienekens. Rome, Italy: Shakter Publishing B. V., 1998. Abstract
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Pereira, A., W. Small, C. Krebs, P. Tavares, D. Edmondson, E. Theil, and B. Huynh. "{Direct spectroscopic and kinetic evidence for the involvement of a peroxodiferric intermediate during the ferroxidase reaction in fast ferritin mineralization}." Biochemistry. 37 (1998): 9871-9876. Abstract
Rapid freeze-quench (RFQ) Mossbauer and stopped-flow absorption spectroscopy were used to monitor the ferritin ferroxidase reaction using recombinant (apo) frog M ferritin; the initial transient ferric species could be trapped by the RFQ method using low iron loading (36 Fe2+/ferritin molecule). Biphasic kinetics of ferroxidation were observed and measured directly by the Mossbauer method; a majority (85%) of the ferrous ions was oxidized at a fast rate of similar to 80 s(-1) and the remainder at a much slower rate of similar to 1.7 s(-1). In parallel with the fast phase oxidation of the Fe2+ ions, a single transient iron species is formed which exhibits magnetic properties (diamagnetic ground state) and Mossbauer parameters (Delta E-Q = 1.08 +/- 0.03 mm/s and delta = 0.62 +/- 0.02 mm/s) indicative of an antiferromagnetically coupled peroxodiferric complex. The formation and decay rates of this transient diiron species measured by the RFQ Mossbauer method match those of a transient blue species (lambda(max) = 650 nm) determined by the stopped-flow absorbance measurement. Thus, the transient colored species is assigned to the same peroxodiferric intermediate. Similar transient colored species have been detected by other investigators in several other fast ferritins (H and M subunit types), such as the human H ferritin and the Escherichia coli ferritin, suggesting a similar mechanism for the ferritin ferroxidase step in all fast ferritins. Peroxodiferric complexes are also formed as early intermediates in the reaction of O-2 With the catalytic diiron centers in the hydroxylase component of soluble methane monooxygenase (MMOH) and in the D84E mutant of the R2 subunit of E. coli ribonucleotide reductase. The proposal that a single protein site, with a structure homologous to the diiron centers in MMOH and R2, is involved in the ferritin ferroxidation step is confirmed by the observed kinetics, spectroscopic properties, and purity of the initial peroxodiferric species formed in the frog M ferritin.
1997
Casalis, L., L. Gregoratti, M. Kiskinova, G. Margaritondo, FMB Fernandes, RJ Silva, GR Morrison, and AW Potts. "First results from the ESCA microscopy beamline on ELETTRA." Surface and Interface Analysis. 25.5 (1997): 374-379. Abstract
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Soares, A., A. Gonçalves, R. Neves-Silva, and J. M. Lemos. "A methodology for impact evaluation of alternative control strategies in a large-scale power plant." IFAC - Control Engineering Practice. 5.3 (1997): 325-335.
Coito, F., J. M. Lemos, RN Silva, and E. Mosca. "Adaptive control of a solar energy plant: Exploiting accessible disturbances." International journal of adaptive control and signal processing. 11 (1997): 327-342. Abstract
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Silva, RN, L. M. Rato, J. M. Lemos, and F. Coito. "Cascade control of a distributed collector solar field." Journal of Process Control. 7 (1997): 111-117. Abstract
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Romao, MJ, I. Kolln, JM Dias, AL Carvalho, A. Romero, P. F. Varela, L. Sanz, E. Topfer-Petersen, and JJ Calvete. "Crystal structure of acidic seminal fluid protein (aSFP) at 1.9 angstrom resolution: a bovine polypeptide of the spermadhesin family." Journal of Molecular Biology. 274 (1997): 650-660. Abstract

We report the three-dimensional crystal structure of acidic seminal fluid protein (aSFP), a 12.9 kDa poly-peptide of the spermadhesin family isolated from bovine seminal plasma, solved by the multiple isomorphous replacement method and refined with data to 1.9 Angstrom resolution with a final R-factor of 17.3%. aSFP is built by a single CUB domain architecture, a 100 to 110 amino-acid-residue extracellular module found in 16 functionally diverse proteins. The structure of aSFP reveals that the CUB domain displays a beta-sandwich topology organised into two 5-stranded beta-sheets, each of which contain two parallel and four antiparallel strands. The structure of aSFP is almost identical to that of porcine spermadhesins PSP-I and PSP-II, which in turn show limited structural similarity with jellyroll topologies of certain virus capsid proteins. Essentially, topologically conserved residues in these proteins are those internal amino acids forming the hydrophobic core of the CUB and the jellyroll domains, suggesting their importance in maintaining the integrity of these protein folds, On the other hand, the structure of aSFP shows structural features that are unique to this protein and which may provide a structural ground for understanding the distinct biological properties of different members of the spermadhesin protein family. (C) 1997 Academic Press Limited.

Romero, A., MJ Romao, P. F. Varela, I. Kolln, JM Dias, AL Carvalho, L. Sanz, E. TopferPetersen, and JJ Calvete. "The crystal structures of two spermadhesins reveal the CUB domain fold." Nature Structural Biology. 4 (1997): 783-788. Abstract

Spermadhesins, 12,000-14,000 M-r mammalian proteins, include lectins involved in sperm-egg binding and display a single CUB domain architecture. We report the crystal structures of porcine seminal plasma PSP-I/PSP-II, a heterodimer of two glycosylated spermadhesins. and bovine aSFP at 2.4 Angstrom and 1.9 Angstrom resolution respectively.

Goulão, Miguel, António Silva Monteiro, Nuno Palmeiro Ribeiro, Alberto Bigotte Almeida, Fernando Brito Abreu, and Pedro Sousa I Relatório de Actividades do Protocolo Marinha Portuguesa / INESC. DAMAG / INESC, 1997. Abstract
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Borges, C., C. Caetano, JC Pessoa, MO Figueiredo, A. Lourenco, MM Gomes, TP Silva, and JP Veiga. "Monitoring the removal of soluble salts from ancient tiles by ion chromatography." Journal of Chromatography a. 770 (1997): 195-201. Abstract
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Borges, C., C. Caetano, J. Costa Pessoa, MO Figueiredo, A. Lourenço, Malhoa M. Gomes, TP Silva, and JP Veiga. "Monitoring the removal of soluble salts from ancient tiles by ion chromatography." Journal of Chromatography A. 770 (1997): 195-201. Abstract
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Rato, L., RN Silva, J. M. Lemos, and F. Coito. "Multirate MUSMAR cascade control of a distributed solar field." Proc. of the European Control Conference ECC97. Brussels, Belgium (1997). Abstract
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Moser, I., F. Mota-Furtado, P. F. O'Mahony, and J. P. Santos. "Rydberg wave packets in parallel electric and magnetic fields." Physical Review A. 55 (1997): 3724-3729. Abstract

The magnitude of the time autocorrelation function M between states excited by two Gaussian laser pulses is calculated for both hydrogen and rubidium atoms inparallel electric and magnetic fields. M is determined by a full quantum-mechanical calculation but the peaks are identified with the periods of the shortest periodicorbits of the corresponding classical system. Qualitative agreement is obtained with experimental results, however, discrepancies are found in the relative heights ofthe peaks.

Schroeder, Michael, Iara Móra, and {José Julio} Alferes. "Vivid agents arguing about distributed extended logic programs." Progress in Artificial Intelligence - 8th Portuguese Conference on Artificial Intelligence, EPIA 1997, Proceedings. Vol. 1323. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 1323. Springer-Verlag, 1997. 217-228. Abstract
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1996
Coelho, AV, PM Matias, LC Sieker, J. Morais, MA Carrondo, J. Lampreia, C. Costa, JJG Moura, I. Moura, and J. LeGall. "Preliminary crystallographic analysis and further characterization of a dodecaheme cytochrome c from Desulfovibrio desulfuricans ATCC 27774." ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY. 52 (1996): 1202-1208. Abstract
{Dodecaheme cytochrome c has been purified from Desulfovibrio (D.) desulfuricans ATCC 27774 cells grown under both nitrate and sulfate-respiring conditions. Therefore, it is likely to play a role in the electron-transfer system of both respiratory chains. Its molecular mass (37 768 kDa) was determined by electrospray mass spectrometry. Its first 39 amino acids were sequenced and a motif was found between amino acids 32 and 37 that seems to exist in all the cytochromes of the c3 type from sulfate-reducing bacteria sequenced at present. The midpoint redox potentials of this cytochrome were estimated to be -68, -120, -248 and -310 mV. Electron paramagnetic resonance spectroscopy of the oxidized cytochrome shows several low-spin components with a g(max) spreading from 3.254 to 2.983. Two crystalline forms were obtained by vapour diffusion from a solution containing 2% PEG 6000 and 0.25-0.75 M acetate buffer pH = 5.5. Both crystals belong to monoclinic space groups: one is PZ,, with a = 61.00
Kwiatkowski, Jan, Marek Andruszkiewicz, Emilio Luque, Tomas Margalef, José C. Cunha, João Louren{\c c}o, Henryk Krawczyk, and Stanislaw Szejko. "Teaching parallel processing: development of curriculum and software tools." SIGCUE Outlook. 24 (1996): 159-161.Website
Kwiatkowski, Jan, Marek Andruszkiewicz, Emilio Luque, Tomas Margalef, José C. Cunha, João M. Lourenço, Henryk Krawczyk, and Stanislaw Szejko. "Teaching parallel processing: development of curriculum and software tools." SIGCUE Outlook. 24 (1996): 159-161. Abstractsigcse96.pdfWebsite

This paper presents an approach to education in Parallel and Distributed Processing undertaken in the Technical University of Gdansk and Technical University of Wroclaw. The paper gives a detailed structure of the project entitled "Teaching Parallel Processing: Development of Curriculum and Software Tools" which was started in 1994 and will be finish in 1997. Two universities from Poland: Technical University of Gdansk and Technical University of Wroclaw and two universities from EC countries: University Autònoma of Barcelona from Spain and University Nova of Lisbon from Portugal participate in the presented project. The main aim of the project is to develop existing curricula of Computer Science specialisation and to establish specialisation concerned with parallel and distributed processing at Polish universities.

Fernando, Ana Luisa Valorização da Biomassa obtida em Lagoas Fotossintéticas de Alta Carga a partir de efluentes de suinicultura. Eds. J. F. Santos-Oliveira. FCT-UNL. Lisbon: FCT-UNL, 1996.
Wenger, M. P., P. Blanas, C. J. Dias, RJ SHUFORD, and D. K. Das-Gupta. "FERROELECTRIC CERAMIC/POLYMER COMPOSITES AND THEIR APPLICATIONS." Ferroelectrics. 187 (1996): 75-86. Abstract
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