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1997
Romero, A., MJ Romao, P. F. Varela, I. Kolln, JM Dias, AL Carvalho, L. Sanz, E. TopferPetersen, and JJ Calvete. "The crystal structures of two spermadhesins reveal the CUB domain fold." Nature Structural Biology. 4 (1997): 783-788. Abstract

Spermadhesins, 12,000-14,000 M-r mammalian proteins, include lectins involved in sperm-egg binding and display a single CUB domain architecture. We report the crystal structures of porcine seminal plasma PSP-I/PSP-II, a heterodimer of two glycosylated spermadhesins. and bovine aSFP at 2.4 Angstrom and 1.9 Angstrom resolution respectively.

Goulão, Miguel, António Silva Monteiro, Nuno Palmeiro Ribeiro, Alberto Bigotte Almeida, Fernando Brito Abreu, and Pedro Sousa I Relatório de Actividades do Protocolo Marinha Portuguesa / INESC. DAMAG / INESC, 1997. Abstract
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Borges, C., C. Caetano, JC Pessoa, MO Figueiredo, A. Lourenco, MM Gomes, TP Silva, and JP Veiga. "Monitoring the removal of soluble salts from ancient tiles by ion chromatography." Journal of Chromatography a. 770 (1997): 195-201. Abstract
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Borges, C., C. Caetano, J. Costa Pessoa, MO Figueiredo, A. Lourenço, Malhoa M. Gomes, TP Silva, and JP Veiga. "Monitoring the removal of soluble salts from ancient tiles by ion chromatography." Journal of Chromatography A. 770 (1997): 195-201. Abstract
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Rato, L., RN Silva, J. M. Lemos, and F. Coito. "Multirate MUSMAR cascade control of a distributed solar field." Proc. of the European Control Conference ECC97. Brussels, Belgium (1997). Abstract
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Moser, I., F. Mota-Furtado, P. F. O'Mahony, and J. P. Santos. "Rydberg wave packets in parallel electric and magnetic fields." Physical Review A. 55 (1997): 3724-3729. Abstract

The magnitude of the time autocorrelation function M between states excited by two Gaussian laser pulses is calculated for both hydrogen and rubidium atoms inparallel electric and magnetic fields. M is determined by a full quantum-mechanical calculation but the peaks are identified with the periods of the shortest periodicorbits of the corresponding classical system. Qualitative agreement is obtained with experimental results, however, discrepancies are found in the relative heights ofthe peaks.

Schroeder, Michael, Iara Móra, and {José Julio} Alferes. "Vivid agents arguing about distributed extended logic programs." Progress in Artificial Intelligence - 8th Portuguese Conference on Artificial Intelligence, EPIA 1997, Proceedings. Vol. 1323. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 1323. Springer-Verlag, 1997. 217-228. Abstract
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1996
Coelho, AV, PM Matias, LC Sieker, J. Morais, MA Carrondo, J. Lampreia, C. Costa, JJG Moura, I. Moura, and J. LeGall. "Preliminary crystallographic analysis and further characterization of a dodecaheme cytochrome c from Desulfovibrio desulfuricans ATCC 27774." ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY. 52 (1996): 1202-1208. Abstract
{Dodecaheme cytochrome c has been purified from Desulfovibrio (D.) desulfuricans ATCC 27774 cells grown under both nitrate and sulfate-respiring conditions. Therefore, it is likely to play a role in the electron-transfer system of both respiratory chains. Its molecular mass (37 768 kDa) was determined by electrospray mass spectrometry. Its first 39 amino acids were sequenced and a motif was found between amino acids 32 and 37 that seems to exist in all the cytochromes of the c3 type from sulfate-reducing bacteria sequenced at present. The midpoint redox potentials of this cytochrome were estimated to be -68, -120, -248 and -310 mV. Electron paramagnetic resonance spectroscopy of the oxidized cytochrome shows several low-spin components with a g(max) spreading from 3.254 to 2.983. Two crystalline forms were obtained by vapour diffusion from a solution containing 2% PEG 6000 and 0.25-0.75 M acetate buffer pH = 5.5. Both crystals belong to monoclinic space groups: one is PZ,, with a = 61.00
Kwiatkowski, Jan, Marek Andruszkiewicz, Emilio Luque, Tomas Margalef, José C. Cunha, João Louren{\c c}o, Henryk Krawczyk, and Stanislaw Szejko. "Teaching parallel processing: development of curriculum and software tools." SIGCUE Outlook. 24 (1996): 159-161.Website
Kwiatkowski, Jan, Marek Andruszkiewicz, Emilio Luque, Tomas Margalef, José C. Cunha, João M. Lourenço, Henryk Krawczyk, and Stanislaw Szejko. "Teaching parallel processing: development of curriculum and software tools." SIGCUE Outlook. 24 (1996): 159-161. Abstractsigcse96.pdfWebsite

This paper presents an approach to education in Parallel and Distributed Processing undertaken in the Technical University of Gdansk and Technical University of Wroclaw. The paper gives a detailed structure of the project entitled "Teaching Parallel Processing: Development of Curriculum and Software Tools" which was started in 1994 and will be finish in 1997. Two universities from Poland: Technical University of Gdansk and Technical University of Wroclaw and two universities from EC countries: University Autònoma of Barcelona from Spain and University Nova of Lisbon from Portugal participate in the presented project. The main aim of the project is to develop existing curricula of Computer Science specialisation and to establish specialisation concerned with parallel and distributed processing at Polish universities.

Fernando, Ana Luisa Valorização da Biomassa obtida em Lagoas Fotossintéticas de Alta Carga a partir de efluentes de suinicultura. Eds. J. F. Santos-Oliveira. FCT-UNL. Lisbon: FCT-UNL, 1996.
Wenger, M. P., P. Blanas, C. J. Dias, RJ SHUFORD, and D. K. Das-Gupta. "FERROELECTRIC CERAMIC/POLYMER COMPOSITES AND THEIR APPLICATIONS." Ferroelectrics. 187 (1996): 75-86. Abstract
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Lemos, J. M., F. Coito, P. Shirley, P. Conceição, F. Garcia, C. Silvestre, and J. Sentieiro. "Long-range adaptive control algorithms for robotics applications." Progress in robotics and intelligent systems. 2 (1996): 134. Abstract
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Mateus, O., and C. Azinheira. "Passeriformes nidificantes da Ribeira da Viscossa (Évora)." Livro de resumos do I Congresso de Ornitologia. Ed. Spea. 1996. Abstract
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1995
MATA, P., VJ GILLET, AP JOHNSON, J. Lampreia, GJ MYATT, S. SIKE, and AL STEBBINGS. "SPROUT - 3D STRUCTURE GENERATION USING TEMPLATES." JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES. 35 (1995): 479-493. Abstract
SPROUT is a computer program for the rational design of molecules for a range of applications in molecular recognition. Molecular graphs are built in a stepwise fashion by subgraph addition. Several heuristics are being explored to restrict the combinatorial explosion that is inherent in structure generation. These include the use of generalized molecular fragments, called templates, as building blocks. Structure generation consists of two stages: (i) the generation of skeletons from templates that satisfy steric constraints and (ii) the substitution of heteroatoms into skeletons to produce molecules that satisfy other constraints such as electrostatics. The choice and definition of the templates and template joining rules are described together with a description of the atom substitution process.
Mendes, B. S., M. J. Nascimento, M. I. Pereira, G. Bailey, N. Lapa, J. Morais, and J. F. Santos Oliveira. "Efficiency of removal in stabilization ponds. I - Influence of climate." Water Science and Technology. 31.12 (1995): 219-229. AbstractWebsite

Owing to the existing or predictable water deficiencies in the South of Portugal, it is necessary to carry out the appropriate management of water resources, by reducing and/or minimizing the negative impacts of untreated/treated domestic effluents in the aquatic environment. As Portugal has a great diversity of ecoclimatic areas, five different stabilization pond systems were chosen to carry out a control study during one year (from March 1991 to March 1992). According to Pina Manique & Albuquerque the ecological classification of these stations is different, varying from Ibero-mediterranean (continental) up to mediterranean (maritime). The physical and chemical parameters studied were: temperature, pH, dissolved oxygen, conductivity, BOD, COD, nitrates, nitrites, ammonia and total nitrogen, total suspended and volatile solids, total phosphorus and orthophosphates. The microbiological parameters studied were: total and faecal coliforms, faecal Streptococci, Clostridium perfringens and Pseudomonas aeruginosa. The correlations between climatic parameters and the efficiency of the removal of organic matter were analysed.

Mendes, B. S., M. J. Nascimento, M. I. Pereira, G. Bailey, N. Lapa, J. Morais, and J. F. Santos Oliveira. "Efficiency of removal in stabilization ponds. II - Statistical analysis of K values." Water Science and Technology. 31.12 (1995): 231-238. AbstractWebsite

The analytical values obtained from five WSP systems located in different ecoclimatic zones in the centre and South of Portugal, were subjected to a statistical analysis of K and K20 values (as used in the van Hoff-Arrhenius equation) utilizing an analysis of variance and a vectorial analysis of principal components. Significant differences between K and K20 values in facultative, maturation ponds and in the whole system were verified. The projection of the first principal components of eigenvectors made possible the classification of the stations, showing the existence of similarities and discrepancies in their removal BOD kinetics behaviour. The K20 value must be estimated and taken into account for the design of waste stabilization ponds.

Lapa, N., J. Morais, and J. F. Santos Oliveira. "A qualidade de vida em Portugal." Indústria e Ambiente. 5 (1995): 15-24.
Guerrero, C., J. Carrasco de Brito, N. Lapa, and J. F. Santos Oliveira. "Re-use of industrial orange wastes as organic fertilizers." Bioresource Technology. 53.1 (1995): 43-51. AbstractWebsite

The aim of this study was to evaluate the possibility of the re-use of industrial orange wastes as organic soil fertilizer. The assay was performed with a lettuce variety widely produced and consumed in Portugal and, consequently, with great commercial interest. Lactuca sativa L. (osteolata variety) was cultivated in Mitcherlich pots containing samples of a poor soil of the Algarve region. This soil was prepared with different amounts of either pulp or peel orange-wastes from an orange-juice industry. The wastes were applied according to an increasing amount of nitrogen. The results obtained were submitted to statistical tests, in order to find the relations between the production of fresh and dry matter, and the percentages of nutrients (nitrogen, phosphorous, potassium, calcium, magnesium and iron) that were obtained in the dry matter, with the types and amounts of wastes applied. An increase in the average production of both fresh- and dry-matter with increasing amounts of either pulp or peel wastes applied, and high positive correlation coefficients between the average percentages of nitrogen, phosphorus and potassium obtained in the dry matter with the average production of both fresh- and dry-matter were found. No phytotoxicity was observed.

Sixou, P., TA YAMAGISHI, M. H. Godinho, and F. Guittard CHOLESTERIC CELLULOSIC MESOPHASES AND GELS. Vol. 209. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 209. AMER CHEMICAL SOC PO BOX 57136, WASHINGTON, DC 20037-0136, 1995. Abstract
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Silva, J. a M. C., and A. M. C. Moutinho. "{Multitechnique description surface analysis system}." Vaccum. 46 (1995): 1205-1209. Abstract

A new multitechnique surface analysis system is presented. It has been designed for research on ion-solid interactions and for survey analysis. SIMS, XPS and AES are the main techniques used. Primary sources are an argon source for standard SIMS and a cesium source for negative and cathionized SIMS, a twin anode (Mg and Al) X-ray source for XPS, and a small spot electron gun for AES and low resolution electron microscopy. The mass spectrometer is a modified quadrupole based probe with an energy analyzer, Dynamic and static SIMS are possible as well as depth profiling. Photoelectrons and Auger electrons are analyzed by a true hemispherical energy analyzer that can also be used for ion spectroscopy. A secondary electron detector is also available. Exchanging the samples is possible through a fast entry air lock. In this small chamber a sputter gun is used to clean the sample. The sample under analysis is supported by a XYZ manipulator and can be temperature controlled in the range 130-850 K

1994
CALDEIRA, J., PN PALMA, M. REGALLA, J. Lampreia, J. Calvete, W. SCHAFER, J. LeGall, I. Moura, and JJG Moura. "PRIMARY SEQUENCE, OXIDATION-REDUCTION POTENTIALS AND TERTIARY-STRUCTURE PREDICTION OF DESULFOVIBRIO-DESULFURICANS ATCC-27774 FLAVODOXIN." EUROPEAN JOURNAL OF BIOCHEMISTRY. 220 (1994): 987-995. Abstract
Flavodoxin was isolated and purified from Desulfovibrio desulfuricans ATCC 27774, a sulfatereducing organism that can also utilize nitrate as an alternative electron acceptor. Mid-point oxidation-reduction potentials of this flavodoxin were determined by ultraviolet/visible and EPR methods coupled to potentiometric measurements and their pH dependence studied in detail. The redox potential E(2), for the couple oxidized/semiquinone forms at pH 6.7 and 25 degrees C is -40 mV, while the value for the semiquinone/hydroquinone forms (E(1)), at the same pH, -387 mV. E(2) varies linearly with pH, while E(1) is independent of pH at high values. However, at low pH (<7.0), this value is less negative, compatible with a redox-linked protonation of the flavodoxin hydroquinone. A comparative study is presented for Desulfovibrio salexigens NCIB 8403 flavodoxin {[}Moura, I., Moura, J. J. G., Bruschi, M. and LeGall, J. (1980) Biochim. Biophys. Acta 591, 1-8]. The complete primary amino acid sequence was obtained by automated Edman degradation from peptides obtained by chemical and enzymic procedures. The amino acid sequence was confirmed by FAB/MS. Using the previously determined tridimensional structure of Desulfovibrio vulgaris flavodoxin as a model {[}similarity, 48,6%; Watenpaugh, K. D., Sieker, L. C., Jensen, L. H., LeGall, J. and Dubourdieu M. (1972) Proc. Natl Acad. Sci. USA 69, 3185-3188], the tridimensional structure of D. desulfuricans ATCC 27774 flavodoxin was predicted using AMBER force-field calculations.
van Slooten, U., O. M. N. D. Teodoro, A. W. Kleyn, J. Los, D. Teillet-Billy, and J. P. Gauyacq. "{Negative ion formation in proton scattering from Ba/Ag(111)}." Chemical Physics. 179 (1994): 227-240. AbstractWebsite

A study on negative ion formation in the scattering of a proton beam from two monolayers of Ba on Ag( 111) surface is pre- sented. The dependence of the negative ion yield on the polar scattering angle and azimuthal orientation of the crystal has been determined for beam energies from 500 to 1000 eV. In addition the yield of fast neutrals has been determined. Based upon a shadowing and blocking analysis of the angular distributions of the H- ions, it can be concluded that the Ba overlayer shows the same crystalline structure as the Ag( 111) substrate. The recorded negative ion fractions can be explained by a simple model describing resonant charge transfer calculated by the non-perturbative CAM method and taking into account the parallel velocity effect.

Mendes, B. S., M. J. Nascimento, M. I. Pereira, G. Bailey, N. Lapa, J. Morais, and J. F. Santos Oliveira. "Ecoclimatic influence on waste stabilization ponds (WSP) efficiencies: the case study of the Sesimbra system." Water Science and Technology. 30.8 (1994): 269-279. AbstractWebsite

Portugal has a great diversity of ecoclimatic areas and Sesimbra was chosen to carry out a study on WSP efficiencies over five years (1989 to 1993). According to Pina Manique & Albuquerque (1954), the climate is classified as Atlantic Mediterranean (AM). Some environmental and climatic parameters have been studied in order to define the area. The treatment system at Sesimbra has three ponds: anaerobic, facultative and maturation. The physical and chemical parameters studied in the WSP system were: Temperature, pH, Dissolved Oxygen, Conductivity, BOD5, COD, nitrates, nitrites, ammonia and total nitrogen, total and volatile suspended solids, total phosphorus and orthophosphates. Algal populations and the following microbiological parameters were studied: total and fecal coliforms, fecal Streptococci, Clostridium perfringens, Pseudomonas aeruginosa and some Enterobacteriaceae. The K and K20 kinetic parameters were studied and derived for the three ponds utilizing the seasonal regional characteristics from the surrounding area. These values were then correlated with temperature and the subsequent removal efficiencies for each pond deduced. The data obtained indicate a necessity to determine the seasonal fluctuations of the K and K20 kinetic parameters for the WSP systems.