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2013
Schulp, AS, M. J. Polcyn, O. Mateus, and LL Jacobs. "Two rare mosasaurs from the Maastrichtian of Angola and the Netherlands." Geologie en Mijnbouw/Netherlands Journal of Geosciences. 92 (2013): 3-10. Abstract
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Pinheiro, C., K. Sergeant, C. M. Machado, J. Renaut, and C. P. Ricardo. "Two Traditional Maize Inbred Lines of Contrasting Technological Abilities Are Discriminated by the Seed Flour Proteome." Journal of Proteome Research. 12 (2013): 3152-3165. AbstractWebsite
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Pinheiro, C., K. Sergeant, C. M. Machado, J. Renaut, and C. P. Ricardo. "Two Traditional Maize Inbred Lines of Contrasting Technological Abilities Are Discriminated by the Seed Flour Proteome." Journal of Proteome Research. 12 (2013): 3152-3165. AbstractWebsite
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Figueiredo, Ondina M., Teresa Pereira Silva, João Pedro Veiga, Daniel PS Oliveira, and Maria João Batista. "X-ray absorption spectroscopy at Re L3-edge applied to mine waste materials: a possible input to the sustainable recovery of rhenium." 2nd Meeting of Synchrotron Radiation Users from Portugal and ESRF-Day. 2013. Abstract
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Silva, S. S., A. R. C. Duarte, J. M. Oliveira, J. F. Mano, and R. L. Reis. "{Alternative methodology for chitin-hydroxyapatite composites using ionic liquids and supercritical fluid technology}." Journal of Bioactive and Compatible Polymers. 28 (2013). Abstract

An alternative, green method was used to develop chitin-based biocomposite (ChHA) materials by an integrated strategy using ionic liquids, supercritical fluid drying, and salt leaching. ChHA matrices were produced by dissolving chitin in 1-butyl-methylimidazolium acetate along with salt and/or hydroxyapatite particles and then subsequent drying. The ChHA composite formed had a heterogeneous porous microstructure with 65{%}-85{%} porosity and pore sizes in the range of 100-300 $μ$m. The hydroxyapatite was found to be well distributed within the composite structures and had a positive effect in the viability and proliferation of osteoblast-like cells, in vitro. Our findings indicate that these ChHA matrices have potential applications in bone tissue engineering. © The Author(s) 2013.

Silva, Simone S., Ana Rita C. Duarte, João F. Mano, and Rui L. Reis. "{Design and functionalization of chitin-based microsphere scaffolds}." Green Chemistry. 15 (2013): 3252. AbstractWebsite

Chitin agglomerated scaffolds were produced and functionalized using the green chemistry principles and clean technologies. Such combination enabled the functionalization of chitin microparticles prepared through dissolution of the polymer in ionic liquids, followed by of the application of a sol-gel method. Finally, the 3D constructs were moulded and dried using a supercritical assisted agglomeration method. Structural and morphological characterization is presented using scanning electronic microscopy (SEM) and micro-computed tomography ([small micro]-CT). An evaluation of the bioactive behavior of the matrices was made by immersing them in simulated body fluid (SBF) for up to 21 days. The potential of such matrices as drug delivery systems was evaluated after the incorporation of dexamethasone into the matrices during drying in supercritical assisted agglomeration. The findings suggested that the morphological features such as porosity, interconnectivity and pore size distribution of the matrices can be tunned by changing particle size, chitin concentration and the pressure applied during moulding. Chitin microspheres were modified by siloxane and silanol groups, providing a bioactive behavior; the apatite formation was shown to be dependent on the amount and arrangement of silanol groups. Furthermore, in vitro drug release studies showed that dexamethasone was sustainably released. All findings suggest that this strategy is a feasible and advantageous process to obtain chitin-based 3D structures with both functional and structural characteristics that make then suitable for regenerative medicine applications.

Cruz, M. M., R. C. Silva, JV Pinto, R. P. Borges, N. Franco, and A. Casaca. "{Formation of oriented nickel aggregates in rutile single crystals by Ni implantation}." Journal of Magnetism and Magnetic Materials. 340 (2013): 102-108. AbstractWebsite

The magnetic and electrical properties of Ni implanted single crystalline TiO2 rutile were studied for nominal implanted fluences between 0.5?1017 cm−2 and 2.0?1017 cm−2 with 150 keV energy, corre- sponding to maximum atomic concentrations between 9 at{%} and 27 at{%} at 65 nm depth, in order to study the formation of metallic oriented aggregates. The results indicate that the as implanted crystals exhibit superparamagnetic behavior for the two higher fluences, which is attributed to the formation of nanosized nickel clusters with an average size related with the implanted concentration, while only paramagnetic behavior is observed for the lowest fluence. Annealing at 1073 K induces the aggregation of the implanted nickel and enhances the magnetization in all samples. The associated anisotropic behavior indicates preferred orientations of the nickel aggregates in the rutile lattice consistent with Rutherford backscattering spectrometry—channelling results. Electrical conductivity displays anisotropic behavior but no magnetoresistive effects were detected.

Alves, Raquel D., Lu\'ısa C. Rodrigues, Juliana R. Andrade, Mariana Fernandes, Joana V. Pinto, Lu\'ıs Pereira, Agnieszka Pawlicka, Rodrigo Martins, Elvira Fortunato, Verónica {de Zea Bermudez}, and Maria Manuela Silva. "{Gelatin n Zn(CF 3 SO 3 ) 2 Polymer Electrolytes for Electrochromic Devices}." Electroanalysis. 25 (2013): 1483-1490. AbstractWebsite
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Guerreiro, B. J., P. Batista, C. Silvestre, and P. Oliveira. "{Globally Asymptotically Stable Sensor-based Simultaneous Localization and Mapping}." Transactions on Robotics. 29 (2013). Abstract
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Guerreiro, B. J., P. Batista, C. Silvestre, and P. Oliveira. "{Globally Asymptotically Stable Sensor-based Simultaneous Localization and Mapping}." Transactions on Robotics. 29 (2013). Abstract
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Fernandes-Silva, S., J. Moreira-Silva, T. H. Silva, R. I. Perez-Martin, C. G. Sotelo, J. F. Mano, A. R. C. Duarte, and R. L. Reis. "{Porous hydrogels from shark skin collagen crosslinked under dense carbon dioxide atmosphere}." Macromolecular Bioscience. 13 (2013). Abstract

The possibility to fabricate marine collagen porous structures crosslinked with genipin under high pressure carbon dioxide is investigated. Collagen from shark skin is used to prepare pre-scaffolds by freeze-drying. The poor stability of the structures and low mechanical properties require crosslinking of the structures. Under dense CO 2 atmosphere, crosslinking of collagen pre-scaffolds is allowed for 16 h. Additionally, the hydrogels are foamed and the scaffolds obtained present a highly porous structure. In vitro cell culture tests performed with a chondrocyte-like cell line show good cell adherence and proliferation, which is a strong indication of the potential of these scaffolds to be used in tissue cartilage tissue engineering. The development of an optimized processing technique for the preparation of stable structures from marine origin collagen is described. The samples are processed under a dense carbon dioxide atmosphere that promotes crosslinking and enhances the morphology of the 3D architectures obtained. © 2013 WILEY-VCH Verlag GmbH {&} Co. KGaA, Weinheim.

Morawiec, Seweryn, Manuel J. Mendes, Salvatore Mirabella, Francesca Simone, Francesco Priolo, and Isodiana Crupi. "{Self-assembled silver nanoparticles for plasmon-enhanced solar cell back reflectors: correlation between structural and optical properties}." Nanotechnology. 24 (2013): 265601. AbstractWebsite

The spectra of localized surface plasmon resonances (LSPRs) in self-assembled silver nanoparticles (NPs), prepared by solid-state dewetting of thin films, are discussed in terms of their structural properties. We summarize the dependences of size and shape of NPs on the fabrication conditions with a proposed structural-phase diagram. It was found that the surface coverage distribution and the mean surface coverage (SC) size were the most appropriate statistical parameters to describe the correlation between the morphology and the optical properties of the nanostructures. The results are interpreted with theoretical predictions based on Mie theory. The broadband scattering efficiency of LSPRs in the nanostructures is discussed towards application as plasmon-enhanced back reflectors in thin-film solar cells.

Alves, R. D., L. C. Rodrigues, J. R. Andrade, A. Pawlicka, L. Pereira, R. Martins, E. Fortunato, and M. M. Silva. "{Study and Characterization of a Novel Polymer Electrolyte Based on Agar Doped with Magnesium Triflate}." Molecular Crystals and Liquid Crystals. 570 (2013): 1-11. AbstractWebsite
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a. a. Ghumman, C., M. C. a. Moutinho, A. Santos, A. Tolstogouzov, and O. M. N. D. Teodoro. "{TOF-SIMS VG Ionex IX23LS: upgrade and application for the urinary stones analysis}." Surface and Interface Analysis. 45 (2013): 532-536. AbstractWebsite

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Duarte, Ana Rita C., Vitor E. Santo, Anabela Alves, Simone S. Silva, Joana Moreira-Silva, Tiago H. Silva, Alexandra P. Marques, Rui A. Sousa, Manuela E. Gomes, João F. Mano, and Rui L. Reis. "{Unleashing the potential of supercritical fluids for polymer processing in tissue engineering and regenerative medicine}." Journal of Supercritical Fluids. 79 (2013): 177-185. AbstractWebsite

One of the major scientific challenges that tissue engineering and regenerative medicine (TERM) faces to move from benchtop to bedside regards biomaterials development, despite the latest advances in polymer processing technologies. A variety of scaffolds processing techniques have been developed and include solvent casting and particles leaching, compression molding and particle leaching, thermally induced phase separation, rapid prototyping, among others. Supercritical fluids appear as an interesting alternative to the conventional methods for processing biopolymers as they do not require the use of large amounts of organic solvents and the processes can be conducted at mild temperatures. However, this processing technique has only recently started to receive more attention from researchers. Different processing methods based on the use of supercritical carbon dioxide have been proposed for the creation of novel architectures based on natural and synthetic polymers and these will be unleashed in this paper. © 2013 Elsevier B.V. All rights reserved.

Duarte, Ana Rita C., Vitor E. Santo, Anabela Alves, Simone S. Silva, Joana Moreira-Silva, Tiago H. Silva, Alexandra P. Marques, Rui A. Sousa, Manuela E. Gomes, João F. Mano, and Rui L. Reis. "{Unleashing the potential of supercritical fluids for polymer processing in tissue engineering and regenerative medicine}." Journal of Supercritical Fluids. 79 (2013): 177-185. AbstractWebsite

One of the major scientific challenges that tissue engineering and regenerative medicine (TERM) faces to move from benchtop to bedside regards biomaterials development, despite the latest advances in polymer processing technologies. A variety of scaffolds processing techniques have been developed and include solvent casting and particles leaching, compression molding and particle leaching, thermally induced phase separation, rapid prototyping, among others. Supercritical fluids appear as an interesting alternative to the conventional methods for processing biopolymers as they do not require the use of large amounts of organic solvents and the processes can be conducted at mild temperatures. However, this processing technique has only recently started to receive more attention from researchers. Different processing methods based on the use of supercritical carbon dioxide have been proposed for the creation of novel architectures based on natural and synthetic polymers and these will be unleashed in this paper. © 2013 Elsevier B.V. All rights reserved.

2012
Gomes, Gabriela M. M., Ricardo Aguas, Joao S. Lopes, Marta C. Nunes, Carlota Rebelo, Paula Rodrigues, and Claudio J. Struchiner. "How host heterogeneity governs tuberculosis reinfection?" PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. 279 (2012): 2473-2478. Abstract

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Amaro, P., and Csilla I. Szabo A vacuum double-crystal spectrometer for reference-free highly charged ions X-ray spectroscopy. Submitted to Radiation Physics and Chemistry, Radiat. Phys. Chem. ed., 2012. Abstract
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Monteiro, Regina C. C., Andreia A. S. Lopes, Maria M. A. Lima, Joao P. Veiga, Rui JC Silva, Carlos J. Dias, Erika J. R. Davim, and Maria H. V. Fernandes. "Sintering, Crystallization, and Dielectric Behavior of Barium Zinc Borosilicate GlassesuEffect of Barium Oxide Substitution for Zinc Oxide." Journal of the American Ceramic Society. 95.10 (2012): 3144-3150. Abstract
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Hadt, R. G., X. J. Xie, S. R. Pauleta, I. Moura, and E. I. Solomon. "Analysis of resonance Raman data on the blue copper site in pseudoazurin: Excited state pi and sigma charge transfer distortions and their relation to ground state reorganization energy." Journal of Inorganic Biochemistry. 115 (2012): 155-162. AbstractWebsite

The short Cu2+-S(Met) bond in pseudoazurin (PAz) results in the presence of two relatively intense S-p(pi) and S-p(sigma) charge transfer (CT) transitions. This has enabled resonance Raman (rR) data to be obtained for each excited state. The rR data show very different intensity distribution patterns for the vibrations in the 300-500 cm(-1) region. Time-dependent density functional theory (TDDFT) calculations have been used to determine that the change in intensity distribution between the S-p(pi) and S-p(sigma) excited states reflects the differential enhancement of S(Cys) backbone modes with Cu-S(Cys)-C-beta out-of-plane (oop) and in-plane (ip) bend character in their respective potential energy distributions (PEDs). The rR excited state distortions have been related to ground state reorganization energies (lambda s) and predict that, in addition to M-L stretches, the Cu-S(Cys)-C-beta oop bend needs to be considered. DFT calculations predict a large distortion in the Cu-S(Cys)-C-beta oop bending coordinate upon reduction of a blue copper (BC) site; however, this distortion is not present in the X-ray crystal structures of reduced BC sites. The lack of Cu-S(Cys)-C-beta oop distortion upon reduction corresponds to a previously unconsidered constraint on the thiolate ligand orientation in the reduced state of BC proteins and can be considered as a contribution to the entatic/rack nature of BC sites. (C) 2012 Elsevier Inc. All rights reserved.

Guimarães, Diana, Maria Luisa Carvalho, Vera Geraldes, Isabel Rocha, Luís Cerqueira Alves, and Jose Paulo Santos. "Lead in liver and kidney of exposed rats: Aging accumulation study." J. Trace Elem. Med Biol.. 26 (2012): 285. AbstractWebsite

The concentration of lead in liver and kidneys of Wistar rats, fed with lead since fetal period in relation to their age and to a control group, was determined. A group of rats was exposed to lead acetate (n=30) in drinking water and the other group was exposed to normal water (n=20). Samples were collected from rats aging between 1 and 11 months and were analyzed by Energy Dispersive X-ray Fluorescence (EDXRF) without any chemical preparation. The EDXRF results were assessed by the PIXE (Proton Induced X-ray Emission) technique. The formaldehyde used to preserve the samples was also analyzed by ETAAS (Electro-Thermal Atomic Absorption Spectrometry) in order to verify if there was any loss of lead from the samples to the formaldehyde. We found that the loss was not significant (<2%). Concerning the mean values of the lead concentration measured in the contaminated soft tissues, in liver they range from 6 to 22μgg(-1), and in kidneys from 44 to 79μgg(-1). The control rats show, in general, values below the EDXRF detection limit (2μgg(-1)). The ratio kidney/liver ranges from 2 to 10 and is strongly positively correlated with the age of the animals. A Spearman correlation matrix to investigate the correlation between elemental concentrations and the dependence of these concentrations with age showed that there is a strong positive correlation with age for lead in the liver but not in the kidney. The correlation matrix showed also that the concentration of lead in these two soft tissues is not correlated. The lead accumulation in liver is made by different plateaus that strongly decrease with age. It was verified the existence of two levels of accumulation in kidney, not very highlighted, which might be indicative of a maximum accumulation level for lead in kidney.

Guimarães, Diana, Maria Luisa Carvalho, Vera Geraldes, Isabel Rocha, Luís Cerqueira Alves, and Jose Paulo Santos. "Lead in liver and kidney of exposed rats: Aging accumulation study." Journal of Trace Elements in Medicine and Biology. 26 (2012): 285. AbstractWebsite

The concentration of lead in liver and kidneys of Wistar rats, fed with lead since fetal period in relation to their age and to a control group, was determined. A group of rats was exposed to lead acetate (n=30) in drinking water and the other group was exposed to normal water (n=20). Samples were collected from rats aging between 1 and 11 months and were analyzed by Energy Dispersive X-ray Fluorescence (EDXRF) without any chemical preparation. The EDXRF results were assessed by the PIXE (Proton Induced X-ray Emission) technique. The formaldehyde used to preserve the samples was also analyzed by ETAAS (Electro-Thermal Atomic Absorption Spectrometry) in order to verify if there was any loss of lead from the samples to the formaldehyde. We found that the loss was not significant (<2%). Concerning the mean values of the lead concentration measured in the contaminated soft tissues, in liver they range from 6 to 22μgg(-1), and in kidneys from 44 to 79μgg(-1). The control rats show, in general, values below the EDXRF detection limit (2μgg(-1)). The ratio kidney/liver ranges from 2 to 10 and is strongly positively correlated with the age of the animals. A Spearman correlation matrix to investigate the correlation between elemental concentrations and the dependence of these concentrations with age showed that there is a strong positive correlation with age for lead in the liver but not in the kidney. The correlation matrix showed also that the concentration of lead in these two soft tissues is not correlated. The lead accumulation in liver is made by different plateaus that strongly decrease with age. It was verified the existence of two levels of accumulation in kidney, not very highlighted, which might be indicative of a maximum accumulation level for lead in kidney.

Amaro, P., F. Fratini, S. Fritzsche, P. Indelicato, J. P. Santos, and A. Surzhykov. "Parametrization of the angular correlation and degree of linear polarization in two-photon decays of hydrogenlike ions." Phys. Rev. A. 86 (2012): 042509. AbstractWebsite

The spontaneous two-photon emission in hydrogenlike ions is investigated within the framework of second- order perturbation theory and Dirac’s equation. Special attention is paid to the angular correlation of the emitted photons as well as to the degree of linear polarization of one of the two photons, if the second is just observed under arbitrary angles. Expressions for the angular correlation and the degree of linear polarization are expanded in powers of cosine functions of the two-photon opening angle, whose coefficients depend on the atomic number and the energy sharing of the emitted photons. The effects of including higher (electric and magnetic) multipoles upon the emitted photon pairs beyond the electric-dipole approximation are also discussed. Calculations of the coefficients are performed for the transitions 2s1/2 → 1s1/2, 3d3/2 → 1s1/2, and 3d5/2 → 1s1/2, along the entire hydrogen isoelectronic sequence (1

Amaro, P., F. Fratini, S. Fritzsche, P. Indelicato, J. P. Santos, and A. Surzhykov. "Parametrization of the angular correlation and degree of linear polarization in two-photon decays of hydrogenlike ions." Physical Review A. 86 (2012): 042509. AbstractWebsite

The spontaneous two-photon emission in hydrogenlike ions is investigated within the framework of second- order perturbation theory and Dirac’s equation. Special attention is paid to the angular correlation of the emitted photons as well as to the degree of linear polarization of one of the two photons, if the second is just observed under arbitrary angles. Expressions for the angular correlation and the degree of linear polarization are expanded in powers of cosine functions of the two-photon opening angle, whose coefficients depend on the atomic number and the energy sharing of the emitted photons. The effects of including higher (electric and magnetic) multipoles upon the emitted photon pairs beyond the electric-dipole approximation are also discussed. Calculations of the coefficients are performed for the transitions 2s1/2 → 1s1/2, 3d3/2 → 1s1/2, and 3d5/2 → 1s1/2, along the entire hydrogen isoelectronic sequence (1 Z 100).

Safari, L., P. Amaro, S. Fritzsche, J. P. Santos, S. Tashenov, and F. Fratini. "Relativistic polarization analysis of Rayleigh scattering by atomic hydrogen." Phys. Rev. A. 86 (2012): 043405. AbstractWebsite

A relativistic analysis of the polarization properties of light elastically scattered by atomic hydrogen is performed, based on the Dirac equation and second-order perturbation theory. The relativistic atomic states used for the calculations are obtained by making use of the finite basis set method and are expressed in terms of B splines and B polynomials. We introduce two experimental scenarios in which the light is circularly and linearly polarized, respectively. For each of these scenarios, the polarization-dependent angular distribution and the degrees of circular and linear polarization of the scattered light are investigated as a function of scattering angle and photon energy. Analytical expressions are derived for the polarization-dependent angular distribution which can be used for scattering by both hydrogenic as well as many-electron systems. Detailed computations are performed for Rayleigh scattering by atomic hydrogen within the incident photon energy range 0.5 to 5 keV. Particular attention is paid to the effects that arise from higher (nondipole) terms in the expansion of the electron-photon interaction.