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2022
Oliveira, Tiago, Pedro Matias, and Corneliu Cismasiu. "Comportamento de painéis de vidro laminado à ação de explosões - Geração de curvas Pressão-Impulso." PROTEDES2022. Região Sul da Ordem dos Engenheiros, Lisboa 2022.
Barreiro, Daniela S., Ricardo N. S. Oliveira, and Sofia R. Pauleta. "Biochemical characterization of AniA from Neisseria gonorrhoeae." bioRxiv (2022): 2022.04.07.487406. Abstractpreprint_sp_1.pdfWebsite

AniA, the nitrite reductase from Neisseria gonorrhoeae, has been shown to play a crucial role in the infection mechanism of this microorganism by producing NO and abolishing epithelial exfoliation. This enzyme is a trimer with one type-1 copper center per subunit and one type 2 copper center in the subunits interface, with the latter being the catalytic site. The two centers were characterized by visible, EPR and CD spectroscopy for the first time, indicating that AniA’s type 1 copper center has a high rhombicity, which is attributed to its tetrahedral geometry, and shorter Met-Cu bond, while type 2 copper center has the usual properties, though with a shorter hyperfine coupling constant (A//= 9.1 mT). The thermostability of AniA was analyzed by differential scanning calorimetry showing a single endothermic transition in the thermogram, with a maximum at 95 °C, while the CD spectra in the visible region indicates the presence of copper centers at 85-90 °C. The reoxidation rates of AniA in the presence of nitrite were analyzed by visible spectroscopy showing a pH dependence and being higher at pH 6.0. The high thermostability of this enzyme might be important for maintaining a high activity in the extracellular space and be less prone to denaturation and proteolysis, contributing to the proliferation of N. gonorrhoeae.Competing Interest StatementThe authors have declared no competing interest.

Ferreira, Inês João, Filipe Oliveira, Ana Rita Jesus, Alexandre Paiva, and Ana Rita C. Duarte. "Current methodologies for the assessment of deep eutectic systems toxicology: Challenges and perspectives." 362 (2022): 119675. AbstractWebsite

Deep eutectic systems (DES) are a mixture of two or more components where at least one works as a hydrogen bond acceptor (HBA) and another as a hydrogen bond donor (HBD). DES most distinctive characteristic is the fact that the mixture possesses a lower melting point, when compared to the melting point of its individual components. These systems have emerged as a “greener alternative” to organic solvents, while also offering several advantages over other “green” solvents such as ionic liquids (IL). However, the number of studies concerning the real biodegradability and biocompatibility are scarce and the methodologies are scattered through different articles. Current state of the art provides several reports using different models, namely using prokaryotic and eukaryotic cells but also more complex models considering whole organisms, such as plants and animals, attempting to understand DES toxicity at different complexity levels. The currently used methodologies is very different among authors, thus the standardization is urgently needed. This review’s purpose is to summarize the available data about DES toxicity, biocompatibility and biodegradability, while also assembling the different methodologies used in an effort to pave the way so that standard guidelines for future research work are established.

Madeira, Ricardo MD, Tânia Vieira, Jorge C. Silva, Ivone R. Oliveira, João P. Borges, Margarida RA M. Lima, and Carmo M. Lança. "Piezoelectric Calcium Modified Barium Titanate for Bone Regeneration." 8.1 (2022): 121. Abstract
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Oliveira, IR, AM Barbosa, KW Santos, MC Lança, M. M. R. A. Lima, T. Vieira, JC Silva, and J. P. Borges. "Properties of strontium-containing BG 58S produced by alkali-mediated sol-gel process." 48.8 (2022): 11456-11465. Abstract
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Oliveira, Tiago, Pedro Matias, and Corneliu Cismasiu. "Análise Experimental e Numérica de Painéis de Vidro Laminado Sujeitos à Ação de Explosões." 4.o ENCONTRO DE I&D EM CIÊNCIAS MILITARES – ECM 2022. Sintra: Academia da Força Aérea, 2022.
Martins, Daniela, Arnaldo Batista, Helena Mouriño, Sara Russo, Catarina Reis, Fátima Serrano, and Manuel Ortigueira. "Adaptive Filtering for the Maternal Respiration Signal Attenuation in the Uterine Electromyogram." Sensors.19 (2022).
Almeida, Martim, Helena Mouriño, Arnaldo Batista, Sara Russo, Filipa Esgalhado, Catarina Palma R. dos Reis, Fátima Serrano, and Manuel Ortigueira. "Electrohysterography extracted features dependency on anthropometric and pregnancy factors." Biomedical Signal Processing and Control. 75 (2022).
Hendrickx, Christophe, Phil R. Bell, Michael Pittman, Andrew R. C. Milner, Elena Cuesta, Jingmai O'Connor, Mark Loewen, Philip J. Currie, Octávio Mateus, Thomas G. Kaye, and Rafael Delcourt. "Morphology and distribution of scales, dermal ossifications, and other non-feather integumentary structures in non-avialan theropod dinosaurs." Biological Reviews (2022). Abstracthendrickxetal.2021.morphologyanddistributionofscales.pdfWebsite

ABSTRACT Modern birds are typified by the presence of feathers, complex evolutionary innovations that were already widespread in the group of theropod dinosaurs (Maniraptoriformes) that include crown Aves. Squamous or scaly reptilian-like skin is, however, considered the plesiomorphic condition for theropods and dinosaurs more broadly. Here, we review the morphology and distribution of non-feathered integumentary structures in non-avialan theropods, covering squamous skin and naked skin as well as dermal ossifications. The integumentary record of non-averostran theropods is limited to tracks, which ubiquitously show a covering of tiny reticulate scales on the plantar surface of the pes. This is consistent also with younger averostran body fossils, which confirm an arthral arrangement of the digital pads. Among averostrans, squamous skin is confirmed in Ceratosauria (Carnotaurus), Allosauroidea (Allosaurus, Concavenator, Lourinhanosaurus), Compsognathidae (Juravenator), and Tyrannosauroidea (Santanaraptor, Albertosaurus, Daspletosaurus, Gorgosaurus, Tarbosaurus, Tyrannosaurus), whereas dermal ossifications consisting of sagittate and mosaic osteoderms are restricted to Ceratosaurus. Naked, non-scale bearing skin is found in the contentious tetanuran Sciurumimus, ornithomimosaurians (Ornithomimus) and possibly tyrannosauroids (Santanaraptor), and also on the patagia of scansoriopterygids (Ambopteryx, Yi). Scales are surprisingly conservative among non-avialan theropods compared to some dinosaurian groups (e.g. hadrosaurids); however, the limited preservation of tegument on most specimens hinders further interrogation. Scale patterns vary among and/or within body regions in Carnotaurus, Concavenator and Juravenator, and include polarised, snake-like ventral scales on the tail of the latter two genera. Unusual but more uniformly distributed patterning also occurs in Tyrannosaurus, whereas feature scales are present only in Albertosaurus and Carnotaurus. Few theropods currently show compelling evidence for the co-occurrence of scales and feathers (e.g. Juravenator, Sinornithosaurus), although reticulate scales were probably retained on the mani and pedes of many theropods with a heavy plumage. Feathers and filamentous structures appear to have replaced widespread scaly integuments in maniraptorans. Theropod skin, and that of dinosaurs more broadly, remains a virtually untapped area of study and the appropriation of commonly used techniques in other palaeontological fields to the study of skin holds great promise for future insights into the biology, taphonomy and relationships of these extinct animals.

Esgalhado, Filipa, Valentina Vassilenko, Arnaldo Batista, and Manuel Ortigueira. "On the Feasibility of Real-Time HRV Estimation Using Overly Noisy PPG Signals." Computers. 11 (12) (2022): 117.
Esgalhado, Filipa, Arnaldo Batista, Valentina Vassilenko, Sara Russo, and Manuel Ortigueira. "Peak Detection and HRV Feature Evaluation on ECG and PPG Signals." Symmetry. 6.14 (2022).
Kocadagli, Ozan, Ezgi Ozer, and Arnaldo G. Batista. "Preictal phase detection on EEG signals using hybridized machine learning classifiers with a novel feature selection procedure based GAs and ICOMP." Expert Systems with Applications (2022): 118825.
Walker, R., D. Durão, D. Dias, I. Catarino, J. Pina, and R. Oliveira. "Preliminary Assessment of an Ultrasonic Level Sensor for the Calorimetric Measurement of AC Losses in Superconducting Devices." International Young Engineers Forum in Electrical and Computer Engineering. IEEE, 2022.
Şan, Mufit, Arnaldo Batista, Sara Russo, Filipa Esgalhado, Catarina Palma Reis, Fátima Serrano, and Manuel Ortigueira. "A Preliminary Exploration of the Placental Position Influence on Uterine Electromyography Using Fractional Modelling." Sensors. 5.22 (2022).
Esgalhado, F., A. Batista, V. Vassilenko, and M. Ortigueira. "Real-Time PPG-Based HRV Implementation Using Deep Learning and Simulink." Technological Innovation for Digitalization and Virtualization. Springer, Cham., 2022.
Silva, Teresa P., Daniel de Oliveira, João P. Veiga, Vitor Lisboa, Jorge Carvalho, Alexandra M. Barreiros, Mathilda L. Coutinho, Eduardo Salas-Colera, and Rogério Vigário. "Contribution to the Understanding of the Colour Change in Bluish-Grey Limestones." Heritage. 5 (2022): 1479-1503. AbstractWebsite

Bluish-grey limestones have been extensively used as ornamental stones for decoration purposes in buildings, as well as in works of art, and accordingly, have been the target of intense exploration. In Portugal, the Jurassic limestone massif known as the Maciço Calcário Estremenho (MCE), has been the source of grey-coloured ornamental stones, namely the Azul Valverde (one of the most well-known bluish-grey limestones) and Atlantic Blue varieties, both of which may undergo colour changes in outdoor environments. In this sense, it is important to understand the sudden colour change from bluish-grey to yellow/beige in the same limestone block in a quarry, or even, what happens to the colour when polished limestone is placed outdoors. This study was undertaken using various techniques, namely XRF (X-ray fluorescence spectrometry), XRD (X-ray diffraction), SEM (scanning electron microscopy), DTA–TG (differential thermal analysis/thermogravimetry) and colourimetry. Synchrotron radiation was also used at the European Synchrotron Radiation Facility (ESRF, Grenoble, France) where XANES (X-ray Absorption Near Edge Structure) spectra at Fe K-edge were collected to ascertain the speciation state of Fe in different coloured zones of the limestone, previously checked by EDXRF (energy dispersive X-ray fluorescence). The presence of Fe2+ and Fe3+ are responsible for the greyish and yellow/brown colour, respectively. On the other hand, the UV radiation from the sun causes a quickened and severe bleaching/fading on the dark blue/grey polished limestone.

Pinto, José, Mykaella Mestre, J. Ramos, Rafael S. Costa, Gerald Striedner, and Rui Oliveira. "A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks." Computers & Chemical Engineering. 165 (2022): 107952. Abstract
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Coutinho, Mathilda Larsson, João Pedro Veiga, Andreia Ruivo, Teresa Pena, Eduardo Salas Colera, Augusta Lima, Elin Figueiredo, Marine Cotte, Margarida Lima, and others. "An insight on the firing condition of Chinese blue-and-white porcelain through XANES." Journal of Analytical Atomic Spectrometry (2022). Abstract
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Mochão, Hugo, Daniel Gonçalves, Leonardo Alexandre, Carolina Castro, Duarte Valério, Pedro Barahona, Daniel Moreira-Gonçalves, Paulo Matos da Costa, Rui Henriques, Lúcio L. Santos, and others. "IPOscore: An interactive web-based platform for postoperative surgical complications analysis and prediction in the oncology domain." Computer Methods and Programs in Biomedicine. 219 (2022): 106754. Abstract
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Pinto, José, João Antunes, João Ramos, Rafael S. Costa, and Rui Oliveira. "Modeling and optimization of bioreactor processes." Current Developments in Biotechnology and Bioengineering. Elsevier, 2022. 89-115. Abstract
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2021
Ferreira, Sofia Henriques, Maria Morais, Daniela Nunes, Maria João Oliveira, Ana Rovisco, Ana Pimentel, Hugo Águas, Elvira Fortunato, and Rodrigo Martins. "{High UV and Sunlight Photocatalytic Performance of Porous ZnO Nanostructures Synthesized by a Facile and Fast Microwave Hydrothermal Method}." Materials. 14 (2021): 2385. AbstractWebsite

The degradation of organic pollutants in wastewaters assisted by oxide semiconductor nanostructures has been the focus of many research groups over the last decades, along with the synthesis of these nanomaterials by simple, eco-friendly, fast, and cost-effective processes. In this work, porous zinc oxide (ZnO) nanostructures were successfully synthesized via a microwave hydrothermal process. A layered zinc hydroxide carbonate (LZHC) precursor was obtained after 15 min of synthesis and submitted to different calcination temperatures to convert it into porous ZnO nanostructures. The influence of the calcination temperature (300, 500, and 700 °C) on the morphological, structural, and optical properties of the ZnO nanostructureswas investigated. All ZnO samples were tested as photocatalysts in the degradation of rhodamine B (RhB) under UV irradiation and natural sunlight. All samples showed enhanced photocatalytic activity under both light sources, with RhB being practically degraded within 60 min in both situations. The porous ZnO obtained at 700 °C showed the greatest photocatalytic activity due to its high crystallinity, with a degradation rate of 0.091 and 0.084 min−1 for UV light and sunlight, respectively. These results are a very important step towards the use of oxide semiconductors in the degradation of water pollutants mediated by natural sunlight.

Wain, Alison, Diogo Castro, {Maria Fernanda} Rollo, Frederico Nogueira, Gon{\c c}alo Santos, {Maria Gra{\c da c}a} Filipe, Isabel Tissot, {Jorge Miguel} Sampaio, {José Paulo} Santos, Manuel Lemos, Marta Manso, Matthias Tissot, Mauro Guerra, Miles Oglethorpe, Pedro Amaro, Pedro Pedroso, Rui Silva, Sofia Pessanha, and {Tiago A. N. } Silva Cultura Material, Cultura Científica: Património Industrial para o Futuro. Portugal: Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2021. Abstract

Material, Culture, Scientific Culture: Industrial Heritage for the Future

Sara, Russo, Arnaldo Batista, Filipa Esgalhado, Catarina Palma R. dos Reis, Fátima Serrano, Valentina Vassilenko, and Manuel Ortigueira. "Alvarez waves in pregnancy: a comprehensive review." Biophysical Reviews. 1 (2021): 12.
Batista, Arnaldo G., Ricardo Cebola, Filipa Esgalhado, Sara Russo, Catarina Palma R. dos Reis, Fátima Serrano, Valentina Vassilenko, and Manuel Ortigueira. "The contractiongram: A method for the visualization of uterine contraction evolution using the electrohysterogram." Biomedical Signal Processing and Control. 67 (2021).
Secci, Lorenzo, Massimo Lapi, Emanuele Teoni, Antonio Pinho Ramos, and Maurizio Orlando. "Eccentric punching strength of continuous flat slabs—Analysis of different experimental setups." Structural Concrete. n/a (2021). AbstractWebsite

Abstract This paper analyses the performance of the experimental setups to assess the punching strength of slab-column connections in continuous flat slabs under vertical and horizontal loading. In the last years, several experimental campaigns have been performed to investigate the punching strength of slab-column connections, but most of the experimental tests concerned isolated slab-column connections. Among the few setups aimed at reproducing the eccentric punching failure in continuous flat slabs, the setup developed at the NOVA School of Science and Technology in Lisbon is considered in this paper. The performance of the Lisbon setup is assessed through nonlinear finite element analyses, calibrated on experimental data, by comparison with numerical results of a theoretical continuous setup. Then, the performance of the isolated setups, used in many researches and at the base of some international codes, is also evaluated through the same finite element model. Numerical analyses highlight that the setup developed in Lisbon could provide reliable ultimate rotations of continuous flat slab connections, but it underestimates the punching strength. Despite isolated setups lead to similar results when compared with the Lisbon setup, the latter seems to provide a better representation of a continuous slab-column connection. The numerical analyses presented in this paper have been performed assuming monotonic lateral loading.