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2010
Nunes, Isabel L., and Jurek Kirakowski Usabilidade de interfaces – versão Portuguesa do Software Usability Measurement Inventory (SUMI) [Interfaces Usability – Portuguese version of the Software Usability Measurement Inventory (SUMI)]. Eds. P. Arezes, J. S. Baptista, M. P. Barroso, P. Carneiro, P. Cordeiro, N. Costa, R. Melo, A. S. Miguel, and G. P. Perestrelo. Occupational Safety and Hygiene (SHO10). Guimarães - Portugal: SPOSHO, 2010. Abstract
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Santos, J. P., A. M. Costa, J. P. Marques, M. C. Martins, P. Indelicato, and F. Parente. "X-ray-spectroscopy analysis of electron-cyclotron-resonance ion-source plasmas." Physical Review A. 82 (2010): 062516. AbstractWebsite
Analysis of x-ray spectra emitted by highly charged ions in an electron-cyclotron-resonance ion source (ECRIS) may be used as a tool to estimate the charge-state distribution (CSD) in the source plasma. For that purpose, knowledge of the electron energy distribution in the plasma, as well as the most important processes leading to the creation and de-excitation of ionic excited states are needed. In this work we present a method to estimate the ion CSD in an ECRIS through the analysis of the x-ray spectra emitted by the plasma. The method is applied to the analysis of a sulfur ECRIS plasma.
Santos, J. P., A. M. Costa, J. P. Marques, M. C. Martins, P. Indelicato, and F. Parente. "X-ray-spectroscopy analysis of electron-cyclotron-resonance ion-source plasmas." Physical Review A. 82 (2010): 062516. AbstractWebsite

Analysis of x-ray spectra emitted by highly charged ions in an electron-cyclotron-resonance ion source (ECRIS) may be used as a tool to estimate the charge-state distribution (CSD) in the source plasma. For that purpose, knowledge of the electron energy distribution in the plasma, as well as the most important processes leading to the creation and de-excitation of ionic excited states are needed. In this work we present a method to estimate the ion CSD in an ECRIS through the analysis of the x-ray spectra emitted by the plasma. The method is applied to the analysis of a sulfur ECRIS plasma.

Bundaleski, Nenad, Ana G. Silva, Augusto M. C. Moutinho, and Orlando M. N. D. Teodoro. "{Adsorption dynamics of water on the surface of TiO2 (110)}." Journal of Physics: Conference Series. Vol. 012008. 2010. 12008. Abstract

Rutile titanium dioxide TiO2 is used in a number of technological areas. Therefore, in surface science, it has become the most studied oxide surface. Water adsorption on rutile TiO2 (110) has been investigated using the X-ray photoelectron spectroscopy (XPS) and the work function study (WF): water adsorption induces formation of a dipole layer, which locally changes the work function. This can be experimentally observed as the onset shift of the secondary electron energy spectrum. While XPS seems to be insufficiently sensitive to monitor water adsorption on TiO2, there is a clear work function change undoubtedly attributed to the water adsorption. The measurements were done for different water vapour pressures, exposure times, sample temperatures and general surface conditions. Time evolutions of the work function change and the H2O partial pressure, enable us to successfully model the adsorption dynamics and help us understand the observed results. The analysis clearly shows existence of at least three different adsorption sites. Their interplay governs the work function time evolution, while the relative contributions depend on the surface temperature and, presumably, its topography. These results will be discussed in the light of several recent experimental and theoretical studies of this system done by other authors.

Naia, Duarte M., P. M. Gordo, O. M. N. D. Teodoro, De A. P. Lima, and A. M. C. Moutinho. "{Characterisation of Ti / Al Multilayered Structures with Slow Positron Beams Applying a Simplified Positron Depth Distribution Model}." Materials science forum. 636-637 (2010): 1097-1101. Abstract

In this work the depth of interfaces in multilayered structures was estimated. The fractions of positron annihilation as function of the implantation energy were estimated from an S-W plot and then converted into a function of the sample depth through the positron implantation profile in the multilayer system computed from a reduced positron profile. The results of this method in Ti/Al samples are comparable to those using the common analysis based on positron diffusion equations. The positron analyses results were compared with SIMS profiles for the same samples.

Mendes, MJ, E. Hernández, I. Tobías, A. Martí, and A. Luque. "{Embedment of metal nanoparticles in GaAs and Si for plasmonic absorption enhancement in intermediate band solar cells}." 25th European Photovoltaic Solar Energy Conference and Exhibition - 5th World Conference on Photovoltaic Energy Conversion. Valencia, Spain 2010. 218-222. Abstract
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Duarte, Ana Rita C., Jo?o F. Mano, and Rui L. Reis. "{Enzymatic degradation of 3D scaffolds of starch-poly-(?-caprolactone) prepared by supercritical fluid technology}." Polymer Degradation and Stability. 95 (2010): 2110-2117. Abstract

Starch-based polymers have been proposed for different tissue engineering applications due to their inherent properties. In this work, a polymeric blend of starch-poly-(?-caprolactone) (SPCL) was processed using supercritical fluid technology, namely, by supercritical assisted phase inversion. As SPCL is a biodegradable polymer, the matrices produced are susceptible of undergoing enzymatic degradation upon implantation in the human body. In vitro assessment of the enzymatic degradation of SPCL was carried out in different buffer solutions containing a-amylase and/or lipase. The effect of the presence ofthese enzymes was studied by monitoring different parameters in order to characterise both bulk and the surface of the scaffolds. As regards to bulk analysis, weight loss of the samples incubated for 1, 3, 7, 14 and 21 days was determined, further differential scanning calorimetry was carried out. The morphology of the scaffolds after these periods was analysed by micro-computed tomography (?-CT) and surface chemistry was characterised by infra-red spectroscopy and contact angle measurements. Results suggest that SPLC scaffolds undergo bulk degradation, which is typically characterised by hydrolysis of chemical bonds in the polymer chain at the centre of the matrix, resulting in a highly porous material. ? 2010 Elsevier Ltd. All rights reserved.

Gonçalves, G., P. Barquinha, L. Pereira, N. Franco, E. Alves, R. Martins, and E. Fortunato. "{High Mobility a-IGO Films Produced at Room Temperature and Their Application in TFTs}." Electrochemical and Solid-State Letters. 13 (2010): H20. AbstractWebsite
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Santo, V. E., A. R. C. Duarte, M. E. Gomes, J. F. Mano, and R. L. Reis. "{Hybrid 3D structure of poly(d,l-lactic acid) loaded with chitosan/chondroitin sulfate nanoparticles to be used as carriers for biomacromolecules in tissue engineering}." Journal of Supercritical Fluids. 54 (2010). Abstract

In the tissue engineering (TE) field, the concept of producing multifunctional scaffolds, capable not only of acting as templates for cell transplantation but also of delivering bioactive agents in a controlled manner, is an emerging strategy aimed to enhance tissue regeneration. In this work, a complex hybrid release system consisting in a three-dimensional (3D) structure based on poly(d,l-lactic acid) (PDLLA) impregnated with chitosan/chondroitin sulfate nanoparticles (NPs) was developed. The scaffolds were prepared by supercritical fluid foaming at 200 bar and 35 °C, and were then characterized by scanning electron microscopy (SEM) and micro-CT. SEM also allowed to assess the distribution of the NPs within the structure, showing that the particles could be found in different areas of the scaffold, indicating a homogeneous distribution within the 3D structure. Water uptake and weight loss measurements were also carried out and the results obtained demonstrated that weight loss was not significantly enhanced although the entrapment of the NPs in the 3D structure clearly enhances the swelling of the structure. Moreover, the hybrid porous biomaterial displayed adequate mechanical properties for cell adhesion and support. The possibility of using this scaffold as a multifunctional material was further evaluated by the incorporation of a model protein, bovine serum albumin (BSA), either directly into the PDLLA foam or in the NPs that were eventually included in the scaffold. The obtained results show that it is possible to achieve different release kinetics, suggesting that this system is a promising candidate for dual protein delivery system for TE applications. © 2010 Elsevier B.V.

Ghumman, Amjad C. A., Olga M. T. Carreira, Augusto M. C. Moutinho, Alexander Tolstogouzov, Valentina Vassilenko, and Orlando M. N. D. Teodoro. "{Identification of human calculi with time-of-flight secondary ion mass spectrometry}." Rapid communications in mass spectrometry. 24 (2010): 185-190. Abstract

Time-of-flight secondary ion mass spectrometry was used to study fourhumancalculi and to compare the results with those from twelve commercially available urinary calculi minerals including three organic compounds (L-cystine, uric acid and sodium urate). Phase identification of calcium phos- phate compounds was carried out by considering the relative ion abundances of [Ca2O]R and [CaPO2]R. Deprotonated [M–H] and protonated [MRH]R uric acid were detected and used for component recognition in pure uric acid and in the mixed samples of struvite, calcium oxalate and uric acid. Iodine related to the medical history of a patient was also detected.

Olziersky, Antonis, Pedro Barquinha, Anna Vilà, Luís Pereira, Gonçalo Gonçalves, Elvira Fortunato, Rodrigo Martins, and Juan R. Morante. "{Insight on the SU-8 resist as passivation layer for transparent Ga[sub 2]O[sub 3]–In[sub 2]O[sub 3]–ZnO thin-film transistors}." Journal of Applied Physics. 108 (2010): 064505. AbstractWebsite
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Barquinha, Pedro, Luis Pereira, Gonçalo Gonçalves, Danjela Kuscer, Marija Kosec, Anna Vilà, Antonis Olziersky, Juan Ramon Morante, Rodrigo Martins, and Elvira Fortunato. "{Low-temperature sputtered mixtures of high-$ąppa$ and high bandgap dielectrics for GIZO TFTs}." Journal of the Society for Information Display. 18 (2010): 762. AbstractWebsite
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Mendes, Manuel J., Ignacio Tobías, Antonio Martí, and Antonio Luque. "{Near-field scattering by dielectric spheroidal particles with sizes on the order of the illuminating wavelength}." J. Opt. Soc. Am. B. 27 (2010): 1221-1231. AbstractWebsite
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Duarte, Ana Rita C., João F. Mano, and Rui L. Reis. "{Novel 3D scaffolds of chitosan-PLLA blends for tissue engineering applications: Preparation and characterization}." Journal of Supercritical Fluids. 54 (2010): 282-289. Abstract

This work addresses the preparation of 3D porous scaffolds of blends of chitosan and poly(l-lactic acid), CHT and PLLA, using supercritical fluid technology. Supercritical assisted phase-inversion was used to prepare scaffolds for tissue engineering purposes. The physicochemical and biological properties of chitosan make it an excellent material for the preparation of drug delivery systems and for the development of new biomedical applications in many fields from skin to bone or cartilage regeneration. On the other hand, PLLA is a synthetic biodegradable polymer widely used for biomedical applications. Supercritical assisted phase-inversion experiments were carried out in samples with different polymer ratios and different polymer solution concentrations. The effect of CHT:PLLA ratio and polymer concentration and on the morphology and topography of the scaffolds was assessed by SEM and Micro-CT. Infra-red spectroscopic imaging analysis of the scaffolds allowed a better understanding on the distribution of the two polymers within the matrix. This work demonstrates that supercritical fluid technology constitutes a new processing technology, clean and environmentally friendly for the preparation of scaffolds for tissue engineering using these materials. © 2010 Elsevier B.V.

Martins, A., A. R. C. Duarte, S. Faria, A. P. Marques, R. L. Reis, and N. M. Neves. "{Osteogenic induction of hBMSCs by electrospun scaffolds with dexamethasone release functionality}." Biomaterials. 31 (2010). Abstract

Electrospun structures were proposed as scaffolds owing to their morphological and structural similarities with the extracellular matrix found in many native tissues. These fibrous structures were also proposed as drug release systems by exploiting the direct dependence of the release rate of a drug on the surface area. An osteogenic differentiation factor, dexamethasone (DEX), was incorporated into electrospun polycaprolactone (PCL) nanofibers at different concentrations (5, 10, 15 and 20 wt.{%} polymer), in a single-step process. The DEX incorporated into the polymeric carrier is in amorphous state, as det ermined by DSC, and does not influence the typical nanofibers morphology. In vitro drug release studies demonstrated that the dexamethasone release was sustained over a period of 15 days. The bioactivity of the released dexamethasone was assessed by cultivating human bone marrow mesenchymal stem cells (hBMSCs) on 15 wt.{%} DEX-loaded PCL NFMs, under dexamethasone-absent osteogenic differentiation medium formulation. An increased concentration of alkaline phosphatase and deposition of a mineralized matrix was observed. Phenotypic and genotypic expression of osteoblastic-specific markers corroborates the osteogenic activity of the loaded growth/differentiation factor. Overall data suggests that the electrospun biodegradable nanofibers can be used as carriers for the sustained release of growth/differentiation factors relevant for bone tissue engineering strategies. © 2010 Elsevier Ltd.

Duarte, A. R. C., J. F. Mano, and R. L. Reis {Preparation of chitosan scaffolds for tissue engineering using supercritical fluid technology}. Vol. 636-637. Materials Science Forum, 636-637., 2010. Abstract

The aim of this study was to evaluate the possibility of preparing chitosan porous matrixes using supercritical fluid technology. Supercritical immersion precipitation technique was used to prepare scaffolds of a natural biocompatible polymer, chitosan, for tissue engineering purposes. The physicochemical and biological properties of chitosan make it an excellent material for the preparation of drug delivery systems and for the development of new biomedical applications in many fields from skin to bone or cartilage. Immersion precipitation experiments were carried out at different operational conditions in order to optimize the processing method. The effect of different organic solvents on the morphology of the scaffolds was assessed. Additionally, different parameters that influence the process were tested and the effect of the processing variables such as polymer concentration, temperature and pressure in the chitosan scaffold morphology, porosity and interconnectivity was evaluated by micro computed tomography. The preparation of a highly porous and interconnected structure of a natural material, chitosan, using a clean and environmentally friendly technology constitutes a new processing technology for the preparation of scaffolds for tissue engineering using these materials. © (2010) Trans Tech Publications.

Duarte, Ana Rita C., João F. Mano, and Rui L. Reis. "{Supercritical phase inversion of starch-poly($ε$-caprolactone) for tissue engineering applications}." Journal of Materials Science: Materials in Medicine. 21 (2010): 533-540. Abstract

In this work, a starch-based polymer, namely a blend of starch-poly(epsilon-caprolactone) was processed by supercritical assisted phase inversion process. This processing technique has been proposed for the development of 3D structures with potential applications in tissue engineering applications, as scaffolds. The use of carbon dioxide as non-solvent in the phase inversion process leads to the formation of a porous and interconnected structure, dry and free of any residual solvent. Different processing conditions such as pressure (from 80 up to 150 bar) and temperature (45 and 55 degrees C) were studied and the effect on the morphological features of the scaffolds was evaluated by scanning electron microscopy and micro-computed tomography. The mechanical properties of the SPCL scaffolds prepared were also studied. Additionally, in this work, the in vitro biological performance of the scaffolds was studied. Cell adhesion and morphology, viability and proliferation was assessed and the results suggest that the materials prepared are allow cell attachment and promote cell proliferation having thus potential to be used in some for biomedical applications.

2009
Rodrigues, Paula, Alessandro Margheri, Carlota Rebelo, and Gabriela M. M. Gomes. "Heterogeneity in susceptibility to infection can explain high reinfection rates." JOURNAL OF THEORETICAL BIOLOGY. 259 (2009): 280-290. Abstract

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Almeida, R. M., S. R. Pauleta, I. Moura, and JJG Moura. "Rubredoxin as a paramagnetic relaxation-inducing probe." Journal of Inorganic Biochemistry. 103 (2009): 1245-1253. AbstractWebsite

The paramagnetic effect due to the presence of a metal center with unpaired electrons is no longer considered a hindrance in protein NMR spectroscopy. In the present work, the paramagnetic effect due to the presence of a metal center with impaired electrons was used to map the interface of an electron transfer complex. Desulfovibrio gigas cytochrome c(3) was chosen as target to study the effect of the paramagnetic probe, Fe-rubredoxin, which produced specific line broadening in the heme IV methyl resonances M2(1) and M18(1). The rubredoxin binding surface in the complex with cytochrome c(3) was identified in a heteronuclear 2D NMR titration. The identified heme methyls on cytochrome c(3) are involved in the binding interface of the complex, a result that is in agreement with the predicted complexes obtained by restrained molecular docking, which shows a cluster of possible solutions near heme IV. The use of a paramagnetic probe in (1)HNMR titration and the mapping of the complex interface, in combination with a molecular simulation algorithm proved to be a valuable strategy to study electron transfer complexes involving non-heme iron proteins and cytochromes. (C) 2009 Elsevier Inc. All rights reserved.

Pereira, Luis, Pedro Barquinha, Goncalo Goncalves, Anna Vila, Antonis Olziersky, Joan Morante, Elvira Fortunato, and Rodrigo Martins. "Sputtered multicomponent amorphous dielectrics for transparent electronics." Physica Status Solidi a-Applications and Materials Science. 206 (2009): 2149-2154. AbstractWebsite
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Pereira, Lu\'ıs, Pedro Barquinha, Gonçalo Gonçalves, Anna Vilà, Antonis Olziersky, Joan Morante, Elvira Fortunato, and Rodrigo Martins. "{Sputtered multicomponent amorphous dielectrics for transparent electronics}." physica status solidi (a). 206 (2009): 2149-2154. AbstractWebsite
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Rivas, M. G., C. S. Mota, S. R. Pauleta, M. S. P. Carepo, F. Folgosa, S. L. A. Andrade, G. Fauque, AS Pereira, P. Tavares, JJ Calvete, I. Moura, and JJG Moura. "Isolation and characterization of a new Cu-Fe protein from Desulfovibrio aminophilus DSM12254." Journal of Inorganic Biochemistry. 103 (2009): 1314-1322. AbstractWebsite

The isolation and characterization of a new metalloprotein containing Cu and Fe atoms is reported. The as-isolated Cu-Fe protein shows an UV-visible spectrum with absorption bands at 320 nm, 409 nm and 615 nm. Molecular mass of the native protein along with denaturating electrophoresis and mass spectrometry data show that this protein is a multimer consisting of 14 +/- 1 subunits of 15254.3 +/- 7.6 Da. Mossbauer spectroscopy data of the as-isolated Cu-Fe protein is consistent with the presence of [2Fe-2S](2+) centers. Data interpretation of the dithionite reduced protein suggest that the metallic cluster could be constituted by two ferromagnetically coupled [2Fe-2S](+) spin delocalized pairs. The biochemical properties of the Cu-Fe protein are similar to the recently reported molybdenum resistance associated protein from Desulfovibrio, D. alaskensis. Further-more, a BLAST search from the DNA deduced amino acid sequence shows that the Cu-Fe protein has homology with proteins annotated as zinc resistance associated proteins from Desulfovibrio, D. alaskensis, D. vulgaris Hildenborough, D. piger ATCC 29098. These facts suggest a possible role of the Cu-Fe protein in metal tolerance. (C) 2009 Published by Elsevier Inc.

Dusseldorp, Marc, Richard Beecroft, and António Moniz Technology Assessment and Education: Introduction. University Library of Munich, Germany, 2009. Abstract

“Theory and Practice” of TA, which is referred to in the title of this journal “TATuP”, is usually addressed as a question of TA research. But science is more than research: the field of teaching requires just as much attention, both practically and theoretically. Therefore, a mere collection of individual teaching experiences and best practice examples does not provide a strong enough basis to discuss questions of TA teaching, these must also be embedded in a theoretical context and discussed in their relation to research. In this special issue, we aim to contribute to a combination of theoretical and practical approaches to the relation of TA and “Bildung”.

Xie, X., R. G. Hadt, S. R. Pauleta, P. J. Gonzalez, S. Un, I. Moura, and E. I. Solomon. "A variable temperature spectroscopic study on Paracoccuspantotrophus pseudoazurin: protein constraints on the blue Cu site." J Inorg Biochem. 103 (2009): 1307-13. AbstractWebsite

The blue or Type 1 (T1) copper site of Paracoccuspantotrophus pseudoazurin exhibits significant absorption intensity in both the 450 and 600 nm regions. These are sigma and pi S(Cys) to Cu(2+) charge transfer (CT) transitions. The temperature dependent absorption, EPR, and resonance Raman (rR) vibrations enhanced by these bands indicate that a single species is present at all temperatures. This contrasts the temperature dependent behavior of the T1 center in nitrite reductase [S. Ghosh, X. Xie, A. Dey, Y. Sun, C. Scholes, E. Solomon, Proc. Natl. Acad. Sci. 106 (2009) 4969-4974] which has a thioether ligand that is unconstrained by the protein. The lack of temperature dependence in the T1 site in pseudoazurin indicates the presence of a protein constraint similar to the blue Cu site in plastocyanin where the thioether ligand is constrained at 2.8 A. However, plastocyanin exhibits only pi CT. This spectral difference between pseudoazurin and plastocyanin reflects a coupled distortion of the site where the axial thioether in pseudoazurin is also constrained, but at a shorter Cu-S(Met) bond length. This leads to an increase in the Cu(2+)-S(Cys) bond length, and the site undergoes a partial tetragonal distortion in pseudoazurin. Thus, its ground state wavefunction has both sigma and pi character in the Cu(2+)-S(Cys) bond.

Martins, R., L. Raniero, L. Pereira, D. Costa†, H. Águas, S. Pereira, L. Silva, A. Gonçalves, I. Ferreira, and E. Fortunato. "{Nanostructured silicon and its application to solar cells, position sensors and thin film transistors}." Philosophical Magazine. 89 (2009): 2699-2721. AbstractWebsite
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